mRNA_D-dudresnayi_contig9891.28705.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9891.28705.1
Unique NamemRNA_D-dudresnayi_contig9891.28705.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9891.28705.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.630e-26
Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:   97 SPRNVPVTVAEKLDMVKGEEAALLREFEDTHKMFAEVEGAKLAEMDAFRRAGEAALQAMREKKEESLRRISEARMHKAKERVRLVQQRLEEFEAAEAASRAEARERDARLEAE 435
            SP  VP TVAE+L++VKGEEA LLREFE+THK  A+ E AK  EM  F+RAGEAAL+AM+++KEE+L+RIS  R  KA ER  L+ QR +EFEA E   R EARERDARLEAE
Sbjct:  224 SPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQEEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAE 336
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9891.28705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LER2_9PHAE1.630e-2664.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9891contigD-dudresnayi_contig9891:8021..9489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size440
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9891.28705.1prot_D-dudresnayi_contig9891.28705.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9891 8021..9489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.7083323-CDS-D-dudresnayi_contig9891:8020..80921622930949.7083323-CDS-D-dudresnayi_contig9891:8020..8092Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 8021..8092 -
1690557976.7928596-CDS-D-dudresnayi_contig9891:8020..80921690557976.7928596-CDS-D-dudresnayi_contig9891:8020..8092Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 8021..8092 -
1622930949.7297497-CDS-D-dudresnayi_contig9891:8578..86561622930949.7297497-CDS-D-dudresnayi_contig9891:8578..8656Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 8579..8656 -
1690557976.8015692-CDS-D-dudresnayi_contig9891:8578..86561690557976.8015692-CDS-D-dudresnayi_contig9891:8578..8656Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 8579..8656 -
1622930949.7484226-CDS-D-dudresnayi_contig9891:9050..91341622930949.7484226-CDS-D-dudresnayi_contig9891:9050..9134Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 9051..9134 -
1690557976.8096552-CDS-D-dudresnayi_contig9891:9050..91341690557976.8096552-CDS-D-dudresnayi_contig9891:9050..9134Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 9051..9134 -
1622930949.7643666-CDS-D-dudresnayi_contig9891:9285..94891622930949.7643666-CDS-D-dudresnayi_contig9891:9285..9489Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 9286..9489 -
1690557976.8176775-CDS-D-dudresnayi_contig9891:9285..94891690557976.8176775-CDS-D-dudresnayi_contig9891:9285..9489Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9891 9286..9489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9891.28705.1

>prot_D-dudresnayi_contig9891.28705.1 ID=prot_D-dudresnayi_contig9891.28705.1|Name=mRNA_D-dudresnayi_contig9891.28705.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=146bp
TDGESSETPTAEGGGADSKSKAATNDDSDTSASPRNVPVTVAEKLDMVKG
EEAALLREFEDTHKMFAEVEGAKLAEMDAFRRAGEAALQAMREKKEESLR
RISEARMHKAKERVRLVQQRLEEFEAAEAASRAEARERDARLEAEQ
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mRNA from alignment at D-dudresnayi_contig9891:8021..9489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9891.28705.1 ID=mRNA_D-dudresnayi_contig9891.28705.1|Name=mRNA_D-dudresnayi_contig9891.28705.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1469bp|location=Sequence derived from alignment at D-dudresnayi_contig9891:8021..9489- (Desmarestia dudresnayi DdudBR16 monoicous)
ACCGATGGGGAGAGTTCGGAGACGCCTACGGCAGAGGGAGGGGGGGCGGA
CAGCAAGAGTAAGGCCGCAACGAACGACGATAGTGACACCAGCGCCAGTC
CGAGGAACGTTCCGGTGACCGTTGCGGAGAAATTGGATATGGTGAAAGGC
GAGGAGGCAGCGCTGCTTCGGGAATTCGAGGACACCCACAAGATGTTTGC
TGAGGTGCTATCATAGCGGCGGGTCGTATTTCGTCGCCTCTTGAAAATAT
TTCATCACGCGTTTTGCTTGATGCGTTTCGTTTGGGTGGTGACTTGTGTA
GTGTTTTGCAAGGGCCACCGTTATTTATTTGTTTATATCTTTTCTTGTGG
GCCAGGTGGAGGGGGCTAAGTTGGCAGAGATGGATGCCTTTCGAAGAGCT
GGCGAGGCGGCTCTGCAGGCTATGAGAGAGAAGAAGGAGGTACGATTCCT
TTATTACGACGGCATTTTGCATTGTGCACCCGCCTGTTGCGACTTTCAGA
CAGGCGGACAGTCTTTGCGGAAACGGACACGTACCGCGTCCTTATAATGG
TGAACCTGCATAATTCAGTTTCTCGCTTGCGCTTTTCGTGACAATTTAGC
CGGGGTTTAGTTTCCCAAGACACAGGCGAAATTGAGACACAACAGTGGTC
TGCCAAAGTAACCTGTATAATGTCTGGCAAGCACATCCCTGTTATATAGA
TGATGTTTTCGTGATTCGCCACATATTAGCTCTTGAGCCGACACGTGTTC
CTTCGAGCCTTCTACTGATATGATGGATTGGTTGCATCTCGCATGTGATG
GATTGAGGTTTTCGCACCGCCCGCATTTTTCAGGAGTCCTTGCGGCGTAT
TAGCGAGGCGCGTATGCACAAGGCGAAGGAGCGTGTGAGGCTGGTGCAGC
AACGCTTAGAGGTTAGCTCTCACGACTGTCGATACTACTGTGTGTGCCCA
CAATGGCGTCAAGGGGTAGCTCTCAAGGCCTAGACTACTGTCGTGCATTT
TGTTTTTCTGGGGGGATGATACAGTGTCGCGGTGGTAAAGAAACATTTAC
GTGTTCCAGACGCCCTAGGAGATCGCTCGTTAACATCACCATGCTTGTAC
GGGACAGAGAGACGCCGTCGCGTTTGGCGTAATGTGTATGTATGTACGAA
GCGACGGGCGAAGGCAGAATTCGCAGTCAAATTACGGGCGACACCAGCAG
CAGCGAGAATGTCAAAGCGCCTCCGCCAAGAAACACCCGGGTTGCTTATA
TTGCCACTATTGCCTCTTTCAACCTTCCCCTTTCCTCGTATCACGTGTGT
TTTTACATTTTCCTTGTTCGTACACGCGCGCAAACAACCTAACGTTGTGT
TGTTCGGTGCGTGCGTTGTAAACTTTTTGTTTTTTTGCGGAGAACAGGAG
TTCGAAGCGGCCGAGGCGGCGTCGAGAGCGGAGGCGCGGGAACGAGACGC
GAGACTGGAGGCAGAACAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9891:8021..9489-

>mRNA_D-dudresnayi_contig9891.28705.1 ID=mRNA_D-dudresnayi_contig9891.28705.1|Name=mRNA_D-dudresnayi_contig9891.28705.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at D-dudresnayi_contig9891:8021..9489- (Desmarestia dudresnayi DdudBR16 monoicous)
ACCGATGGGGAGAGTTCGGAGACGCCTACGGCAGAGGGAGGGGGGGCGGA
CAGCAAGAGTAAGGCCGCAACGAACGACGATAGTGACACCAGCGCCAGTC
CGAGGAACGTTCCGGTGACCGTTGCGGAGAAATTGGATATGGTGAAAGGC
GAGGAGGCAGCGCTGCTTCGGGAATTCGAGGACACCCACAAGATGTTTGC
TGAGACCGATGGGGAGAGTTCGGAGACGCCTACGGCAGAGGGAGGGGGGG
CGGACAGCAAGAGTAAGGCCGCAACGAACGACGATAGTGACACCAGCGCC
AGTCCGAGGAACGTTCCGGTGACCGTTGCGGAGAAATTGGATATGGTGAA
AGGCGAGGAGGCAGCGCTGCTTCGGGAATTCGAGGACACCCACAAGATGT
TTGCTGAGGTGGAGGGGGCTAAGTTGGCAGAGATGGATGCCTTTCGAAGA
GCTGGCGAGGCGGCTCTGCAGGCTATGAGAGAGAAGAAGGAGGTGGAGGG
GGCTAAGTTGGCAGAGATGGATGCCTTTCGAAGAGCTGGCGAGGCGGCTC
TGCAGGCTATGAGAGAGAAGAAGGAGGAGTCCTTGCGGCGTATTAGCGAG
GCGCGTATGCACAAGGCGAAGGAGCGTGTGAGGCTGGTGCAGCAACGCTT
AGAGGAGTCCTTGCGGCGTATTAGCGAGGCGCGTATGCACAAGGCGAAGG
AGCGTGTGAGGCTGGTGCAGCAACGCTTAGAGGAGTTCGAAGCGGCCGAG
GCGGCGTCGAGAGCGGAGGCGCGGGAACGAGACGCGAGACTGGAGGCAGA
ACAGGAGTTCGAAGCGGCCGAGGCGGCGTCGAGAGCGGAGGCGCGGGAAC
GAGACGCGAGACTGGAGGCAGAACAG
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