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Homology
BLAST of mRNA_D-dudresnayi_contig9885.28695.1 vs. uniprot
Match: D7FR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR26_ECTSI) HSP 1 Score: 105 bits (262), Expect = 3.500e-21 Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1
Query: 607 KPTADGTSDGTPLTALLGRGGGFRSRERARREAAFRLSSLGSQYPKFLDGGTVHRWLSEDYRSSSWTRDPLLDAKNRPQQQ-SGSGAYGGRTSSADKKGSGWVTSRSHG 930
+P+ + G T LG GG ++RERARREAAF+L+SLGSQYPKFLD TV+RWLS+DY SSSW+RDP+L A NRPQ S +G GG +KGSGWVT+ S G
Sbjct: 301 RPSGASANPGVSRTGRLGETGGEQARERARREAAFQLASLGSQYPKFLDDRTVNRWLSKDY-SSSWSRDPML-ALNRPQDTGSDNGRVGG---GGARKGSGWVTNGSRG 404
BLAST of mRNA_D-dudresnayi_contig9885.28695.1 vs. uniprot
Match: A0A6H5JG24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG24_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 4.990e-8 Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1 GGWSIGQDALASPGACPICLDAFSTASSPVTGGGDGLVLLGRGDGQPAAAMR-CGHSFCQSCL 186
GGWS+GQDALAS G CPICLDAFS A+ G D L+G D PAA + CGH+FCQ L
Sbjct: 245 GGWSVGQDALASRGVCPICLDAFSEAADG--SGADTKGLVGA-DRMPAATLPDCGHTFCQRRL 304
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1294 |
| Cds size | 867 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930948.4959629-UTR-D-dudresnayi_contig9885:6519..6669 | 1622930948.4959629-UTR-D-dudresnayi_contig9885:6519..6669 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9885 6520..6669 + |
| 1690557976.3772032-UTR-D-dudresnayi_contig9885:6519..6669 | 1690557976.3772032-UTR-D-dudresnayi_contig9885:6519..6669 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9885 6520..6669 + |
| 1622930948.6033294-UTR-D-dudresnayi_contig9885:10882..11159 | 1622930948.6033294-UTR-D-dudresnayi_contig9885:10882..11159 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9885 10883..11159 + |
| 1690557976.4328659-UTR-D-dudresnayi_contig9885:10882..11159 | 1690557976.4328659-UTR-D-dudresnayi_contig9885:10882..11159 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9885 10883..11159 + |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9885.28695.1 >prot_D-dudresnayi_contig9885.28695.1 ID=prot_D-dudresnayi_contig9885.28695.1|Name=mRNA_D-dudresnayi_contig9885.28695.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=289bp
MRCGHSFCQSCLSRWYGDTVTDSAAHAHDYDSSGRSSSSRPCPICDEPTP
ALGDPRLAARRNNKKNRRQRWRPRGNPGPLRFRWPGAASRAATAPTSGFP
SGAGNSASASGADLRFVSPRLGPKPALTCARQGSVPAPLPPPPPPPRPLA
PLKPTADGTSDGTPLTALLGRGGGFRSRERARREAAFRLSSLGSQYPKFL
DGGTVHRWLSEDYRSSSWTRDPLLDAKNRPQQQSGSGAYGGRTSSADKKG
SGWVTSRSHGRISDSGGGLGERRSYGGGCSSSATGGGW* back to topmRNA from alignment at D-dudresnayi_contig9885:6520..11159+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9885.28695.1 ID=mRNA_D-dudresnayi_contig9885.28695.1|Name=mRNA_D-dudresnayi_contig9885.28695.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4640bp|location=Sequence derived from alignment at D-dudresnayi_contig9885:6520..11159+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAGGGTGGTCTATCGGACAAGACGCGCTGGCCTCGCCGGGCGCGTGTCC
GATCTGTCTGGACGCTTTCTCGACGGCGTCATCGCCGGTAACGGGCGGCG
GTGATGGATTAGTGTTGTTGGGAAGGGGCGACGGCCAGCCGGCCGCAGCG
ATGCGCTGCGGTCACTCCTTCTGCCAAAGGTGTGGGTAGTAGTCAGACGT
GCGCTCGTTGTTGTTGTTGTTGTTTGTTGTTGTCTTCACATTAAAACATC
GTCCTTTCTACCCTACGACATTCAGTAGTAGCTAGCGTAACTCAAAAGAG
GCTGTACTGTTTTCTTCCATCCTAAGAGAGTATACGAGATTCCGGGGTCA
CACGCTACAAAAAAATAGCACCAAAAATCGCAAACTGTTAAAAACTTATT
AAGAGTATAGAGGGATCTCGTATTTGTTTTGATTTTATTGTACTTGATAG
GCTACTGGAGGGCTCTTTACGAGGTTGGCACCCCTAACATACTAGATTAA
GACTGGAATATATTAGGATTTTTGTATGGTGTTTTATGCTATTGGGTGCC
TTTTTCTAATAAAAATCAGTGTTGAGCGTCGACCCAACCCAACCTAACCC
CAACCCACACTAAGGATCGAACCCAGCGCGGCTTCGCCGCGCGTTTGGAT
GACGTGAACAAAACAGAAAAAAGTTCTAGAAAAAAGAAAAAACACATCAT
ACGAAACCCTAAATATATTCCAGTCTTAATCTGGTATGTTAGGGGTGCCA
AGAAAGCTCGTAAAGGCTACTGGGATTTAGAGACGTGGGTTTCAGAATAA
GACTAGAAATTTCTATACGTAGTTAAGTCTAACCCTGACTGAAATGACCC
CTATACTGATGATAGTGGATAGTGGGTAGTAAACTTATAAGAAATGCTAT
ATCTAAAGAGTGTTAAAACGTTTAATAATGTGTACCGGCTCGTTGGATGG
TTTTATTGACCCGTTGTACGTGTAGTACATAGTGTTGGCAAGCAAAGTCG
GCGCTGAGTGCAGATGGTGAGTGGCTCAGTGATGTGAGTTGTGGGTTGCT
TCTGTCTGTAACGTAGGATGATGACATCTGGGAATATGATAATGCGTATT
GTTTTTTTCAGCCATTGTTTTATCCTCCGGCAAATGGGTACAAAAAGGTT
GCTACAGTAGGACAGCAATGACTTTATTATTTTTTCTTACAAAGACATCA
GCCGTGACGTTCCAAACTGGTTCGGGGGCCAGGGGATAATCGTCAACCTC
ACTGTGTGATACATCGGTCGCGCGGATTCTATCGGTCCTCAGAACGGTTA
TAACGCAGTGGCTCCCCTGGGGTGTCCCAGGCTCTACAGGATAATTTAAA
AAAAAAGGTTAGCTGTCTTACTTAAAAAATGTTGCTGCCTGGAGCAGTGC
GGCGCGCAGCGTAGTAATTTAGCCCTACTGCAACGACCCCCCACCAGTGC
AGTGCAAGCGCAACAGACAGCCACAGTGCGGATTTTTGCCCGGCGCATGC
CGATGGCCTTAGCTTCGGACGCGGAGGACGAAGTGTCGTTCCACGGCGAT
GGGCGGCTGGGCAGAGCCGCCTTAGCGTTTTTGTTGTTGTAGGAAGGAGC
TTAAGCATGCCTGTTTTATTATGTGAGTAGTACCAAGTGGGCTGTTTTCA
GCAGTTTCAGAAAATTCTACCACTACGAAACCCTAAACCCGAACCCTGAC
GACGAACACAGTGTATACTAATAGAGAAGTCAAAACCTCTGTAAAGTTAC
TGTAAAGTTCCTGTAAAGTTCCGTCCTACAACATTGCTAAACCTACTGGC
TGGGCTTGCCGTTGTTTTATTATTTTTCGGGGTGTTTTCATGTCACGCAC
CCGGTATTTTATATTTTACGCCCGAATCTCCGTCGTTTTTTTTTTTTTTT
TTTTTTTAGGAAAGCTTCGAAGATTCAACAGATATTATAATAATACCAGG
TCGCCGGTGACATGGAAGTTTGCGTGTTTGTTGTCCCTCAGCGGCTGTAA
TTATGCAATTACTCCTACAAAAAATCGGTATGCGACACAGACGTAAGACA
ATTACCGCAAAATCTCAAACACACAATGTAGTGTTGTAGAACGAGTAGAT
AACAAGTGTCGTGAGACCGATGTTATCCTCCTATCATGTTTACCGCGTAA
ACGTTGTATTCATTGCCCCCCTGTTGACCGGCATCACAACACTATACCTC
CCGACCCATGATTCTTCTACCTTGTCGTATTTAACAGTTGCCTCTCACGG
TGGTACGGCGATACGGTCACCGACAGCGCCGCCCACGCACACGACTACGA
CAGCAGCGGCCGCAGCAGCAGCAGCCGGCCGTGTCCAATCTGTGACGAAC
CTACGCCAGCACTAGGAGACCCAAGACTAGCAGCACGCCGCAACAACAAA
AAAAACCGCCGCCAACGCTGGCGCCCACGCGGAAACCCCGGCCCTCTCAG
GTTTAGATGGCCCGGCGCCGCCTCGCGCGCCGCAACGGCACCAACGTCAG
GGTTTCCATCAGGAGCAGGCAATAGCGCTAGCGCTAGTGGAGCAGACCTT
CGATTTGTGTCGCCGCGGTTAGGGCCGAAGCCCGCCCTTACGTGCGCCCG
ACAAGGCAGCGTACCGGCGCCCCTGCCGCCGCCCCCGCCGCCACCACGGC
CCCTTGCACCATTGAAGCCGACGGCTGACGGAACCTCCGATGGAACCCCG
CTTACCGCGGTGGGGACAGAGGCAACTGCGACGGGTAACAGTGCCGGTAC
CGCTAGGGATGGGGGAAGGCGTCGGGCCCAAGGGTGGGGAGGTGCGCCGG
TGGAAGAGCCGGAAGTTGCTGGGGCGGGGGTGTCGGCGAGGTCAAGCGGA
GGGTTTAGGTCGAGAGAACGAGCGCGGAGAGAGGCCGCGTTTCGTCTGTC
GTCGTTGGGGTCTCAGTATCCGAAGTTCCTGGACGGGGGTACTGTGCACA
GGTTTGTGCGTTGTGTTAATAAGACATTTTTTTTTTTTTTTTTTTTTTGC
GCGCGGTTGTATGTTGTTTTTACAGCCTGAACGCGGTTCTTTTCACAGGG
GGGGTACTGTAGACAAGGGNNNNNNNNNNGGGGGGTGGGGGTGGGGGGTG
GGGGGGGGGGGGTGCTGGGCGGGGGTTGGGGCGTTGTGTTTATGGGGCTT
TTTTTTTTTTTTTTTTTTGCGCGCGCGGTTGTATGTTGTTGTTACAGCCT
GAACGCGGTACTGTACACAGGCGGGGTACTGTAGACAAGTGTGCGTTTTT
GTTAAAATACGTTTTCTTGTGTGTGTGTTTTTTGCGCGTTTGTATGTTTG
TTGTTGTTATCGTCTGAACGCGGTACTGTAAACAGTTGTGCGATTGTGTA
AAAATACGTAATTTTGTGTTTTTTGTTTTGCGCGTTTTTTTGTATGTTGT
TATAGCTTCAACGCTGGCGACAACGCATGATAGTATGGTTGTATACTTAT
GTTGTCGTGGCAGGCGTTTTTTGGTCAATGTTTTGTTGGGAGTTCTGGTT
CCACGTTTTTTGGGATGCTTAAATTTAGCGCCACGGTTGATGCGGCAAAT
CGATGGCCACTACTGCCACTGTACTGTATTTCCGTCAGGCAAAGCTCTCC
CGCGGTCGCGTATCCCGCGCTCGCCCTCCACAACATACGACGAAGTAATT
TATATAAATACTTCGAAGTATAAAAAACGATGCTCAACGATCGAGAGTAC
AACTATGTTCCGTTCCTTATATAAAAGAAGACGTAAAGATAATTGTTTAT
CAATAGTCCCTTTTGGCCGTCGTAAGCCTGGCGGTACAGTCAATTCCACG
AGTAGCACTGCTGACTCTCATAGTACGAGTACAGTAGTAGTAGAGGCAGG
TGGTGTGGTGGGTGTGCTGTCGTGTTGTCGTATGATACGTCGTATGATTT
GTTGCTGTTGTCTGTTGTGTTTTTCTCTTTCTACTCGTACACTGACGCTG
ATGGACGTCCAGCACACCCGTATTTCGTTGTACGTACTGAACAATCTTCT
TCCTCCTAATTATACTTCGTATGATAAGTAAATAAAATCGAATAATACGC
GCATCTCAAGAGGCTTATTTCTTGTGTCATAGCCTTATTTCATAGCCTTA
TTGCCTTCGACGGCAGGTGGCTCTCGGAAGACTACCGTTCGTCCAGCTGG
ACCCGAGACCCGCTCCTGGACGCGAAAAATCGACCACAACAACAGTCTGG
CAGCGGTGCCTACGGTGGGAGAACGAGTAGCGCTGACAAGAAGGGCAGCG
GCTGGGTTACAAGCCGCTCGCACGGTAGAATCAGCGACAGTGGCGGGGGG
TTAGGGGAGAGGAGGTCCTACGGTGGCGGCTGTTCCTCGTCAGCGACGGG
GGGGGGCTGGTAGCCAATGTTTCTTTTTTGTAGTACCTGTAACAAAAAAA
TATTGAAAACGCAACCGTAACGAGGTCGTGCCAATCTGCACCGTTGCTGG
GTGGCTAGTAAGATGTGTGCATCGTGGCCTAGCTCGTTTTCGTTGTTGAG
ATACGAAGTATGGCTCATCAAAGGTTAATATTGTTATATATAACCCAGAC
CAGCTTGTAGCGTAGTGGCCACAAGGCCCATCGCCCCTGTTGGCGGAAGA
TCGGGTGTTCGAACCCCGATACAAACACGTGTGCACGTTT back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9885:6520..11159+ >mRNA_D-dudresnayi_contig9885.28695.1 ID=mRNA_D-dudresnayi_contig9885.28695.1|Name=mRNA_D-dudresnayi_contig9885.28695.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at D-dudresnayi_contig9885:6520..11159+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCGCTGCGGTCACTCCTTCTGCCAAAGATGCGCTGCGGTCACTCCTTC
TGCCAAAGTTGCCTCTCACGGTGGTACGGCGATACGGTCACCGACAGCGC
CGCCCACGCACACGACTACGACAGCAGCGGCCGCAGCAGCAGCAGCCGGC
CGTGTCCAATCTGTGACGAACCTACGCCAGCACTAGGAGACCCAAGACTA
GCAGCACGCCGCAACAACAAAAAAAACCGCCGCCAACGCTGGCGCCCACG
CGGAAACCCCGGCCCTCTCAGGTTTAGATGGCCCGGCGCCGCCTCGCGCG
CCGCAACGGCACCAACGTCAGGGTTTCCATCAGGAGCAGGCAATAGCGCT
AGCGCTAGTGGAGCAGACCTTCGATTTGTGTCGCCGCGGTTAGGGCCGAA
GCCCGCCCTTACGTGCGCCCGACAAGGCAGCGTACCGGCGCCCCTGCCGC
CGCCCCCGCCGCCACCACGGCCCCTTGCACCATTGAAGCCGACGGCTGAC
GGAACCTCCGATGGAACCCCGCTTACCGCGTTGCCTCTCACGGTGGTACG
GCGATACGGTCACCGACAGCGCCGCCCACGCACACGACTACGACAGCAGC
GGCCGCAGCAGCAGCAGCCGGCCGTGTCCAATCTGTGACGAACCTACGCC
AGCACTAGGAGACCCAAGACTAGCAGCACGCCGCAACAACAAAAAAAACC
GCCGCCAACGCTGGCGCCCACGCGGAAACCCCGGCCCTCTCAGGTTTAGA
TGGCCCGGCGCCGCCTCGCGCGCCGCAACGGCACCAACGTCAGGGTTTCC
ATCAGGAGCAGGCAATAGCGCTAGCGCTAGTGGAGCAGACCTTCGATTTG
TGTCGCCGCGGTTAGGGCCGAAGCCCGCCCTTACGTGCGCCCGACAAGGC
AGCGTACCGGCGCCCCTGCCGCCGCCCCCGCCGCCACCACGGCCCCTTGC
ACCATTGAAGCCGACGGCTGACGGAACCTCCGATGGAACCCCGCTTACCG
CGTTGCTGGGGCGGGGTTGCTGGGGCGGGGCGGAGGGTTTAGGTCGAGAG
AACGAGCGCGGAGAGAGGCCGCGTTTCGTCTGTCGTCGTTGGGGTCTCAG
TATCCGAAGTTCCTGGACGGGGGTACTGTGCACAGCGGAGGGTTTAGGTC
GAGAGAACGAGCGCGGAGAGAGGCCGCGTTTCGTCTGTCGTCGTTGGGGT
CTCAGTATCCGAAGTTCCTGGACGGGGGTACTGTGCACAGGTGGCTCTCG
GAAGACTACCGTTCGTCCAGCTGGACCCGAGACCCGCTCCTGGACGCGAA
AAATCGACCACAACAACAGTCTGGCAGCGGTGCCTACGGTGGGAGAACGA
GTAGCGCTGACAAGAAGGGCAGCGGCTGGGTTACAAGCCGCTCGCACGGT
AGAATCAGCGACAGTGGCGGGGGGTTAGGGGAGAGGAGGTCCTACGGTGG
CGGCTGTTCCTCGTCAGCGACGGGGGGGGGCTGGTAGGTGGCTCTCGGAA
GACTACCGTTCGTCCAGCTGGACCCGAGACCCGCTCCTGGACGCGAAAAA
TCGACCACAACAACAGTCTGGCAGCGGTGCCTACGGTGGGAGAACGAGTA
GCGCTGACAAGAAGGGCAGCGGCTGGGTTACAAGCCGCTCGCACGGTAGA
ATCAGCGACAGTGGCGGGGGGTTAGGGGAGAGGAGGTCCTACGGTGGCGG
CTGTTCCTCGTCAGCGACGGGGGGGGGCTGGTAG back to top
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