mRNA_D-dudresnayi_contig9884.28694.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9884.28694.1
Unique NamemRNA_D-dudresnayi_contig9884.28694.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9884.28694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9884contigD-dudresnayi_contig9884:7037..7573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.4260793-CDS-D-dudresnayi_contig9884:7038..74031622930948.4260793-CDS-D-dudresnayi_contig9884:7038..7403Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9884 7039..7403 -
1690557976.3425498-CDS-D-dudresnayi_contig9884:7038..74031690557976.3425498-CDS-D-dudresnayi_contig9884:7038..7403Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9884 7039..7403 -
1622930948.444468-CDS-D-dudresnayi_contig9884:7518..75731622930948.444468-CDS-D-dudresnayi_contig9884:7518..7573Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9884 7519..7573 -
1690557976.3581107-CDS-D-dudresnayi_contig9884:7518..75731690557976.3581107-CDS-D-dudresnayi_contig9884:7518..7573Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9884 7519..7573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9884.28694.1prot_D-dudresnayi_contig9884.28694.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9884 7039..7573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9884.28694.1

>prot_D-dudresnayi_contig9884.28694.1 ID=prot_D-dudresnayi_contig9884.28694.1|Name=mRNA_D-dudresnayi_contig9884.28694.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=140bp
DSEIPNTTEESRLIITMSVATTCITVQVEKARNFCEYDTIAQQLLALYNN
NTETMQSKLFGSTATFTKLKNKIKWNEGITTLYNRPFYVEQFKNIENGMR
GNGSYRQFGIGGIGKTATSLMYIIELGRREVVLLYICMGR
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mRNA from alignment at D-dudresnayi_contig9884:7037..7573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9884.28694.1 ID=mRNA_D-dudresnayi_contig9884.28694.1|Name=mRNA_D-dudresnayi_contig9884.28694.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at D-dudresnayi_contig9884:7037..7573- (Desmarestia dudresnayi DdudBR16 monoicous)
GATTCCGAGATTCCGAATACTACTGAAGAATCTCGATTGATTATTACTAT
GTCAGGTGAAGTACTGTGCATTCTTTCTTCTATTTTCATTATCAACTTTG
TTTTTTCATAATCCTAACCTTACTATGTTTGTAAATTTGCATGTTGGTGT
CATTTGTTTAATGGATTTAGTTGCTACAACATGCATTACAGTTCAAGTTG
AAAAAGCTAGGAACTTCTGTGAATATGACACAATTGCTCAACAATTACTG
GCCTTGTACAACAATAATACAGAAACTATGCAAAGTAAATTGTTTGGTAG
CACAGCCACATTTACAAAACTTAAAAACAAAATAAAGTGGAATGAAGGCA
TCACTACTCTCTATAATCGACCTTTCTACGTTGAACAATTTAAAAATATT
GAAAATGGAATGAGGGGGAATGGATCTTATCGACAATTCGGTATAGGTGG
AATAGGAAAAACTGCTACAAGTTTAATGTACATTATTGAACTTGGCAGGC
GCGAGGTTGTACTGTTATATATATGCATGGGGAGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9884:7037..7573-

>mRNA_D-dudresnayi_contig9884.28694.1 ID=mRNA_D-dudresnayi_contig9884.28694.1|Name=mRNA_D-dudresnayi_contig9884.28694.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at D-dudresnayi_contig9884:7037..7573- (Desmarestia dudresnayi DdudBR16 monoicous)
GATTCCGAGATTCCGAATACTACTGAAGAATCTCGATTGATTATTACTAT
GTCAGGATTCCGAGATTCCGAATACTACTGAAGAATCTCGATTGATTATT
ACTATGTCAGTTGCTACAACATGCATTACAGTTCAAGTTGAAAAAGCTAG
GAACTTCTGTGAATATGACACAATTGCTCAACAATTACTGGCCTTGTACA
ACAATAATACAGAAACTATGCAAAGTAAATTGTTTGGTAGCACAGCCACA
TTTACAAAACTTAAAAACAAAATAAAGTGGAATGAAGGCATCACTACTCT
CTATAATCGACCTTTCTACGTTGAACAATTTAAAAATATTGAAAATGGAA
TGAGGGGGAATGGATCTTATCGACAATTCGGTATAGGTGGAATAGGAAAA
ACTGCTACAAGTTTAATGTACATTATTGAACTTGGCAGGCGCGAGGTTGT
ACTGTTATATATATGCATGGGGAGGTTGCTACAACATGCATTACAGTTCA
AGTTGAAAAAGCTAGGAACTTCTGTGAATATGACACAATTGCTCAACAAT
TACTGGCCTTGTACAACAATAATACAGAAACTATGCAAAGTAAATTGTTT
GGTAGCACAGCCACATTTACAAAACTTAAAAACAAAATAAAGTGGAATGA
AGGCATCACTACTCTCTATAATCGACCTTTCTACGTTGAACAATTTAAAA
ATATTGAAAATGGAATGAGGGGGAATGGATCTTATCGACAATTCGGTATA
GGTGGAATAGGAAAAACTGCTACAAGTTTAATGTACATTATTGAACTTGG
CAGGCGCGAGGTTGTACTGTTATATATATGCATGGGGAGG
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