mRNA_D-dudresnayi_contig9870.28687.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9870.28687.1
Unique NamemRNA_D-dudresnayi_contig9870.28687.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A482S0D8_9ARCH (SRR1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0D8_9ARCH)

HSP 1 Score: 82.0 bits (201), Expect = 2.070e-15
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  259 DSIIALGIGSL-ISPVSQLQLAIYLCLCDLYLSPTASIDSKCIFDPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGK---------------KVLFFLPHCPYRLYCNILWANWDNLENIYLYGNR 591
            D ++ALG+GS   S  + LQLA+   L +  L  +  + S   +DP++  VDR + + L I +L  NTKG++++T  +                VL+F+PHCP+RLY N+LW +W  L++I ++GNR
Sbjct:   86 DVVVALGLGSFSTSKNAILQLAMLQLLRESLLDTSRPV-SVLAYDPVMREVDRALCEALDITILNSNTKGRYRLTISELFLPNRHVLQGTSKSTVLYFMPHCPFRLYSNVLWDHWHELDSILIFGNR 211          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A293MB15_ORNER (SRR1 domain-containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MB15_ORNER)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-14
Identity = 48/161 (29.81%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  109 ISQLEVIVTDEDGDKILDQVKQSKQYINNSLYFNFVSRSISSNLPSEQSFDSIIALGIGSLIS-PVSQLQLAIYLCLCDLYLSPTASIDSKCIFDPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANWDNLENIYLYGN 588
            + Q++ +  D    KILD    ++  + +S Y+  VS     ++ +E+    ++  G+G+  + P ++ QLA+ +CL  + + P AS     ++DP+ T V+ ++ ++ G  V   N +GK   T+  + LF++PHC   LY ++LWANW+ L N+ ++GN
Sbjct:   15 LRQVDAVNYDSARRKILD----AEAEMLSSPYYLKVSAVFRKHVLAEEPVKWVVCYGLGNFSTCPAARFQLALLMCL-RVLIDPEASE----VYDPVFTEVEHRLLESFGFKVTARNEEGKRHTTQ--RTLFYMPHCGKPLYNSVLWANWNQLRNVVIFGN 164          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A444TDQ5_ARMVU (SRR1-like protein n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TDQ5_ARMVU)

HSP 1 Score: 79.7 bits (195), Expect = 1.160e-14
Identity = 65/183 (35.52%), Postives = 103/183 (56.28%), Query Frame = 1
Query:   73 TTVTKSKPA---KGMISQLEVIVTDEDGDKILDQVKQSKQ-YINNSLYFNFVSRSISSNLPSEQS----FDSIIALGIGSLISPVS-QLQLAIYLCLCDLYLSPTASIDSKCIFDPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANW--DNLENIYLYGN 588
            T V+K K A   K +I Q   I  +ED D  L +++  KQ  I N +   F+ R   S+  SE++    + SII  G+G + S  + Q+QLA  L L + YL+    ID+   +DP+ +  D+K+ +   I V+ +N   K  V +  K LF++PHCP+ LY N++WAN   +NL+N+++ GN
Sbjct:    7 TLVSKRKTARKRKRIIPQN--IEVEEDFDSSLRKIQAGKQKLIENIVIHTFLHRVRKSDAKSEENNEENYSSIICYGLGKISSCYNAQVQLAFLLILKE-YLN----IDNVLAYDPVFSPSDKKLLNYFHIDVINQNESAKRIVEE--KTLFYMPHCPFSLYNNLIWANLTGNNLKNVFIIGN 180          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A024ULV4_9STRA (SRR1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULV4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.580e-12
Identity = 39/110 (35.45%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  265 IIALGIGSLISPVSQLQLAIYLCLCDLYLSPTASIDSK--CIFDPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANWDNLENIYLYGN 588
            ++  G+GS  S  +  QLA  + + + +L+  A+I  +  C+FDPI+T  D  +   +   VL  N +G  + TK  + LFF+PHC  +LY N+L ANW++L+ +++ GN
Sbjct:   95 LVCYGLGSFTSSNAAYQLACAVHIRE-WLAGHAAIHLQHACLFDPIMTQDDAVVASAMDFDVLTTNEQGHRRATKSLQTLFFMPHCGKQLYQNVLLANWESLQYVFILGN 203          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A1Y3N5U7_PIRSE (SRR1 domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N5U7_PIRSE)

HSP 1 Score: 69.7 bits (169), Expect = 1.620e-11
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  265 IIALGIGSLI-SPVSQLQLAIYLCLCDLYLSPTASIDSKCIF-DPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANW--DNLENIYLYGN 588
            I++ G+G+   S +SQ Q A    LC L L     ++ K  F DP+ T V++++ +N G  V+ EN  G+  +   K  LF++PHC Y LY N+L  NW  D L  + L GN
Sbjct:    2 IVSYGVGNFTKSRISQFQFA----LCIL-LKSNLKLNGKVYFYDPVFTEVEKEVINNYGFEVIEENEHGRRNI--NKMTLFYMPHCNYNLYNNVLGTNWELDKLSKLILIGN 106          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A7S4DID7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DID7_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 1.710e-11
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  265 IIALGIGSLISPVSQLQLAIYLCLCDLYLSPTASIDSKCIFDPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANWDN-LENIYLYGN 588
            ++  G+GSL    +       L L DL +    SI S  IFDPI+  VD  + + LG  +L  N  GK   +K  + LFF+PHCP RLY N+LW NW + L N  + GN
Sbjct:   84 MVCYGLGSLEHAPTGSNCLHQLVLADL-IRKLLSIPSILIFDPILKEVDIVLAEKLGFQLLQVNEAGKRLASK--RTLFFMPHCPMRLYSNLLWTNWGSFLANTIIIGN 189          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A1Y1V930_9FUNG (SRR1 domain-containing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V930_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 8.430e-11
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  265 IIALGIGSLI-SPVSQLQLAIYLCLCDLYLSPTASIDSKCIF-DPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANWD--NLENIYLYGN 588
            I++ GIG+ + S +SQ Q A    LC L L     ++ K  F DPI T V++++ +N G  V+ +N  GK  +   K  LF++PHC Y LY N+L  NW+   L  + L GN
Sbjct:  103 IVSYGIGNFMKSRISQFQFA----LCIL-LKANLKLNGKVYFYDPIFTEVEKEVINNYGFEVIEDNEHGKRNI--NKMTLFYMPHCNYNLYNNVLGTNWELGKLSKLILIGN 207          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: UPI00098E5E81 (protein SENSITIVITY TO RED LIGHT REDUCED 1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E5E81)

HSP 1 Score: 68.6 bits (166), Expect = 2.250e-10
Identity = 52/157 (33.12%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  151 KILDQVKQSKQYINNSLYFN-FVSR----SISSNLPSEQSFD---SIIALGIGSLIS-PVSQLQLAIYLCLCDLYLSPTASIDSKCIFDPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANW--DNLENIYLYGN 588
            K+L +++ S   + +S ++N F+S+     I S L    SF+    +I  GIGS+ S    +LQL++ L + D      +SI+   +FDPII++ ++ + + LG+ V+  + +G+ +V      LFF+PHC  +LY N+L ANW  +NL  + + GN
Sbjct:   64 KLLSKLQSSLSKLKSSQFYNQFLSQLQCPQIQSGLNKLLSFNPQFDLIIYGIGSIDSYETPRLQLSLALLILDRLKPQISSIE---VFDPIISTAEQAVIEQLGVAVMGVDERGRREVKVP--TLFFMPHCEVQLYDNLLDANWGCENLNKMVILGN 215          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A1Y1X5E6_9FUNG (SRR1 domain-containing protein (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1X5E6_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-8
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
Query:  265 IIALGIGSLI-SPVSQLQLAIYLCLCDLYLSPTASIDSKCIF-DPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANW--DNLENIYLYGN 588
            I++ G+G+   S +SQ Q A    LC L L     ++ K  F DP+ T  ++++    G  V+ EN  G+  +   K  LF++PHC Y LY N+L  NW  D L  + L GN
Sbjct:  102 IVSYGVGNFTKSRISQFQFA----LCIL-LKLNLKLNGKVYFYDPVFTDSEKEVIKKYGYEVIEENEHGRRDI--NKMTLFYMPHCNYNLYNNVLGTNWSLDKLSKLILIGN 206          
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Match: A0A1Y2AF82_9FUNG (SRR1 domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AF82_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 1.850e-8
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  265 IIALGIGSLI-SPVSQLQLAIYLCLCDLYLSPTASIDSKCIF-DPIITSVDRKIYDNLGIPVLPENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANW--DNLENIYLYGN 588
            I++ GIG+   S +SQ Q A    LC L L     ++ K  F DP+ T +++++  N G   + +N  GK  + K    +F++PHC Y LY N+L  NW  D L  + L GN
Sbjct:  104 IVSYGIGNFTKSRISQYQFA----LCIL-LKLNLKLNGKVYFYDPVFTKIEKEVIKNYGYENIEKNENGKRNIEK--MTIFYMPHCNYNLYNNVLGTNWEFDKLSKLILIGN 208          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9870.28687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A482S0D8_9ARCH2.070e-1536.22SRR1 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A293MB15_ORNER1.010e-1429.81SRR1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A444TDQ5_ARMVU1.160e-1435.52SRR1-like protein n=1 Tax=Armadillidium vulgare Ta... [more]
A0A024ULV4_9STRA5.580e-1235.45SRR1 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A1Y3N5U7_PIRSE1.620e-1137.50SRR1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S4DID7_HETAK1.710e-1140.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Y1V930_9FUNG8.430e-1138.39SRR1 domain-containing protein n=1 Tax=Piromyces f... [more]
UPI00098E5E812.250e-1033.12protein SENSITIVITY TO RED LIGHT REDUCED 1 n=1 Tax... [more]
A0A1Y1X5E6_9FUNG1.770e-835.71SRR1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Y2AF82_9FUNG1.850e-835.71SRR1 domain-containing protein n=1 Tax=Neocallimas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9870contigD-dudresnayi_contig9870:1900..2493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score77.8
Seed ortholog evalue6.3e-12
Seed eggNOG ortholog7070.TC005128-PA
GOsGO:0007623,GO:0008150,GO:0048511
EggNOG free text desc.SRR1
EggNOG OGs39X6Q@33154,3BQCZ@33208,3E47A@33213,3SMUN@50557,41ZCT@6656,KOG3131@1,KOG3131@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size594
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.6498992-CDS-D-dudresnayi_contig9870:1899..24931622930947.6498992-CDS-D-dudresnayi_contig9870:1899..2493Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9870 1900..2493 +
1690557976.0853505-CDS-D-dudresnayi_contig9870:1899..24931690557976.0853505-CDS-D-dudresnayi_contig9870:1899..2493Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9870 1900..2493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9870.28687.1prot_D-dudresnayi_contig9870.28687.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9870 1900..2493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9870.28687.1

>prot_D-dudresnayi_contig9870.28687.1 ID=prot_D-dudresnayi_contig9870.28687.1|Name=mRNA_D-dudresnayi_contig9870.28687.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=198bp
MKNTDGDDGVWQTVPRKRTGKGHSTTVTKSKPAKGMISQLEVIVTDEDGD
KILDQVKQSKQYINNSLYFNFVSRSISSNLPSEQSFDSIIALGIGSLISP
VSQLQLAIYLCLCDLYLSPTASIDSKCIFDPIITSVDRKIYDNLGIPVLP
ENTKGKHQVTKGKKVLFFLPHCPYRLYCNILWANWDNLENIYLYGNR*
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mRNA from alignment at D-dudresnayi_contig9870:1900..2493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9870.28687.1 ID=mRNA_D-dudresnayi_contig9870.28687.1|Name=mRNA_D-dudresnayi_contig9870.28687.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at D-dudresnayi_contig9870:1900..2493+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGAACACTGATGGGGATGATGGTGTCTGGCAAACAGTTCCACGTAA AAGAACAGGAAAAGGACATTCTACTACAGTCACAAAATCTAAACCTGCTA AGGGAATGATCAGTCAACTCGAAGTAATTGTTACCGATGAAGATGGAGAT AAAATACTTGATCAAGTTAAGCAGTCAAAGCAATATATAAATAACTCTTT ATATTTTAATTTTGTTTCCAGATCAATTTCTTCCAATCTTCCTTCTGAAC AAAGTTTCGATAGCATAATTGCCTTGGGTATTGGTTCACTCATTTCTCCT GTTTCTCAATTACAACTTGCAATATATCTTTGTTTATGTGATTTATATCT TTCTCCTACAGCCTCAATTGATAGCAAGTGTATATTTGATCCAATAATAA CATCAGTAGATAGGAAAATATATGATAATTTAGGTATACCTGTATTACCG GAGAATACCAAAGGAAAACATCAAGTAACTAAAGGGAAGAAGGTTCTTTT CTTTTTACCACATTGTCCTTATCGGTTATATTGTAATATATTATGGGCTA ATTGGGATAATTTGGAGAATATATATCTATATGGGAACAGGTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9870:1900..2493+

>mRNA_D-dudresnayi_contig9870.28687.1 ID=mRNA_D-dudresnayi_contig9870.28687.1|Name=mRNA_D-dudresnayi_contig9870.28687.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at D-dudresnayi_contig9870:1900..2493+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGAACACTGATGGGGATGATGGTGTCTGGCAAACAGTTCCACGTAA
AAGAACAGGAAAAGGACATTCTACTACAGTCACAAAATCTAAACCTGCTA
AGGGAATGATCAGTCAACTCGAAGTAATTGTTACCGATGAAGATGGAGAT
AAAATACTTGATCAAGTTAAGCAGTCAAAGCAATATATAAATAACTCTTT
ATATTTTAATTTTGTTTCCAGATCAATTTCTTCCAATCTTCCTTCTGAAC
AAAGTTTCGATAGCATAATTGCCTTGGGTATTGGTTCACTCATTTCTCCT
GTTTCTCAATTACAACTTGCAATATATCTTTGTTTATGTGATTTATATCT
TTCTCCTACAGCCTCAATTGATAGCAAGTGTATATTTGATCCAATAATAA
CATCAGTAGATAGGAAAATATATGATAATTTAGGTATACCTGTATTACCG
GAGAATACCAAAGGAAAACATCAAGTAACTAAAGGGAAGAAGGTTCTTTT
CTTTTTACCACATTGTCCTTATCGGTTATATTGTAATATATTATGGGCTA
ATTGGGATAATTTGGAGAATATATATCTATATGGGAACAGGTAAATGAAG
AACACTGATGGGGATGATGGTGTCTGGCAAACAGTTCCACGTAAAAGAAC
AGGAAAAGGACATTCTACTACAGTCACAAAATCTAAACCTGCTAAGGGAA
TGATCAGTCAACTCGAAGTAATTGTTACCGATGAAGATGGAGATAAAATA
CTTGATCAAGTTAAGCAGTCAAAGCAATATATAAATAACTCTTTATATTT
TAATTTTGTTTCCAGATCAATTTCTTCCAATCTTCCTTCTGAACAAAGTT
TCGATAGCATAATTGCCTTGGGTATTGGTTCACTCATTTCTCCTGTTTCT
CAATTACAACTTGCAATATATCTTTGTTTATGTGATTTATATCTTTCTCC
TACAGCCTCAATTGATAGCAAGTGTATATTTGATCCAATAATAACATCAG
TAGATAGGAAAATATATGATAATTTAGGTATACCTGTATTACCGGAGAAT
ACCAAAGGAAAACATCAAGTAACTAAAGGGAAGAAGGTTCTTTTCTTTTT
ACCACATTGTCCTTATCGGTTATATTGTAATATATTATGGGCTAATTGGG
ATAATTTGGAGAATATATATCTATATGGGAACAGGTAA
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