mRNA_D-dudresnayi_contig9868.28678.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9868.28678.1
Unique NamemRNA_D-dudresnayi_contig9868.28678.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A6H5L508_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L508_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.680e-23
Identity = 54/84 (64.29%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLD-TDVPSKVRL------------AFHSLAISSSGRLYEWGLIYTDSQST 213
            AAGEHHTLVVTQYGDV +FGRG+EGQLGHGE SRLD  D P KV              AFHSLA++SSG LYEWGLI++D   T
Sbjct:   77 AAGEHHTLVVTQYGDVLTFGRGKEGQLGHGEASRLDMADSPRKVGSLSNVTVTRVACGAFHSLAVTSSGTLYEWGLIHSDPDWT 160          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: F4PQK6_CAVFA (Regulator of chromosome condensation domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PQK6_CAVFA)

HSP 1 Score: 70.9 bits (172), Expect = 1.320e-12
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKV---------RLA---FHSLAISSSGRLYEWGLIYTDSQSTE 216
            A GE H+L VT++GDV SFGRGREGQLGH E  + +T  P+ +         R+A   FHSLA++ +G++YEWG ++   +S +
Sbjct:   40 ACGEAHSLAVTEFGDVYSFGRGREGQLGHPE--KYNTAHPNVITALAHERITRVACGNFHSLALTDTGKIYEWGQLHEIDKSAK 121          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A7S2G8L3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8L3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.300e-12
Identity = 39/82 (47.56%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGE-GSRLDTDVPSKVRL------------AFHSLAISSSGRLYEWGLIYTDSQ 207
            AAG+ HTLV T  GDV SFGRGREGQLGHG  G   +   P  V              A HSL  + +GR+Y WGLI+ D +
Sbjct:   43 AAGDGHTLVATTDGDVLSFGRGREGQLGHGVFGPSANLSEPQVVHALGADHVVEVACGALHSLCRTEAGRVYLWGLIHADDE 124          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A397DLD6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DLD6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.220e-12
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVR-LAFHSLAISSSGRLYEWGLIYTD 201
            AAG++H L VT++GDV S+GRG++G+LGHGE  R D  +P KV+ L  H +A + +G    WGL++ +
Sbjct:   13 AAGDNHALAVTEFGDVYSWGRGKDGELGHGE-PREDLPIPVKVKGLQEHIVATTITGHXXMWGLLHDE 79          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A6A5A8X3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8X3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.090e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVRLA------------FHSLAISSSGRLYEWGLIYTD 201
            AAG++H L VT++GDV S+GRG++G+LGHGE  R D  +P KV+               HS+A + +G +Y WGL++ +
Sbjct:   41 AAGDNHALAVTEFGDVYSWGRGKDGELGHGE-PRDDLPIPVKVKGLQEHIVVNVACGNIHSMATTITGHVYMWGLLHDE 118          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A024TYK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYK6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.950e-11
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVRLA-----------FHSLAISSSGRLYEWGLIYTDSQSTEV 219
            AAG++H L VT++GDV S+GRG++G+LGHG+  R D  VP K++              HS+A + +G +Y WGL++ +   T  
Sbjct:   41 AAGDNHALAVTEFGDVYSWGRGKDGELGHGD-PRDDQPVPLKIKGLQEHIVNVACGNIHSMATTITGHVYMWGLLHDEGPPTST 123          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A024TZ06_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZ06_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.960e-11
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVRLA-----------FHSLAISSSGRLYEWGLIYTDSQSTEV 219
            AAG++H L VT++GDV S+GRG++G+LGHG+  R D  VP K++              HS+A + +G +Y WGL++ +   T  
Sbjct:   41 AAGDNHALAVTEFGDVYSWGRGKDGELGHGD-PRDDQPVPLKIKGLQEHIVNVACGNIHSMATTITGHVYMWGLLHDEGPPTST 123          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: A0A024U0W1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0W1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.970e-11
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVRLA-----------FHSLAISSSGRLYEWGLIYTDSQSTEV 219
            AAG++H L VT++GDV S+GRG++G+LGHG+  R D  VP K++              HS+A + +G +Y WGL++ +   T  
Sbjct:   41 AAGDNHALAVTEFGDVYSWGRGKDGELGHGD-PRDDQPVPLKIKGLQEHIVNVACGNIHSMATTITGHVYMWGLLHDEGPPTST 123          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: W4GHB8_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GHB8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.030e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVRLA------------FHSLAISSSGRLYEWGLIYTD 201
            AAG++H L VT++GDV S+GRG++G+LGHGE  R D  +P KV+               HS+A + +G +Y WGL++ +
Sbjct:   41 AAGDNHALAVTEFGDVYSWGRGKDGELGHGE-PREDLPIPVKVKGLQEHIVVNVACGNIHSMATTITGHVYMWGLLHDE 118          
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Match: T0QF54_SAPDV (BTB domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QF54_SAPDV)

HSP 1 Score: 66.6 bits (161), Expect = 4.060e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDT---------DVPSKVRLA-FHSLAISSSGRLYEWGLIYTDSQSTE 216
            AAGE+H L VT++GDV S+GRG +G+LGHG+   L T          + + V     HS+A + SG++Y WGL++  +Q  E
Sbjct:   42 AAGENHALAVTEFGDVYSWGRGNDGELGHGDREALTTPQRIKGLEDQIVTNVACGNVHSIAATISGQVYMWGLLHDPNQPAE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9868.28678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L508_9PHAE2.680e-2364.29BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
F4PQK6_CAVFA1.320e-1245.24Regulator of chromosome condensation domain-contai... [more]
A0A7S2G8L3_9STRA4.300e-1247.56Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A397DLD6_9STRA5.220e-1247.06Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A6A5A8X3_9STRA1.090e-1141.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TYK6_9STRA2.950e-1139.29Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A024TZ06_9STRA2.960e-1139.29BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A024U0W1_9STRA2.970e-1139.29Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GHB8_9STRA4.030e-1141.77BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
T0QF54_SAPDV4.060e-1141.46BTB domain-containing protein n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9868contigD-dudresnayi_contig9868:99..846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.3e-20
Seed eggNOG ortholog2880.D8LSA5
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.4397032-CDS-D-dudresnayi_contig9868:98..1841622930946.4397032-CDS-D-dudresnayi_contig9868:98..184Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 99..184 -
1690557975.625674-CDS-D-dudresnayi_contig9868:98..1841690557975.625674-CDS-D-dudresnayi_contig9868:98..184Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 99..184 -
1622930946.460999-CDS-D-dudresnayi_contig9868:710..8461622930946.460999-CDS-D-dudresnayi_contig9868:710..846Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 711..846 -
1690557975.636121-CDS-D-dudresnayi_contig9868:710..8461690557975.636121-CDS-D-dudresnayi_contig9868:710..846Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 711..846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9868.28678.1prot_D-dudresnayi_contig9868.28678.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9868 99..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9868.28678.1

>prot_D-dudresnayi_contig9868.28678.1 ID=prot_D-dudresnayi_contig9868.28678.1|Name=mRNA_D-dudresnayi_contig9868.28678.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=74bp
AAGEHHTLVVTQYGDVESFGRGREGQLGHGEGSRLDTDVPSKVRLAFHSL
AISSSGRLYEWGLIYTDSQSTEV*
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mRNA from alignment at D-dudresnayi_contig9868:99..846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9868.28678.1 ID=mRNA_D-dudresnayi_contig9868.28678.1|Name=mRNA_D-dudresnayi_contig9868.28678.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=748bp|location=Sequence derived from alignment at D-dudresnayi_contig9868:99..846- (Desmarestia dudresnayi DdudBR16 monoicous)
GCCGCGGGCGAGCACCACACCTTGGTCGTCACGCAATACGGCGATGTCGA GTCCTTCGGCCGAGGGCGGGAGGGGCAGCTCGGACACGGCGAAGGCTCGA GGCTTGACACGGACGTACCGAGCAAGGTTAGGTTGGGTACATACTGTATG TACTTACTCCTCTTCTTTATTTTTTCTTCTGCATTTTGTTTTGTAGAGTG TTCAAAAAGGTGCACGAGGGAGGGAGGGACATCACATCATATCATATCAT ATCATATAATAACATACGCGTGTACAGTACGCCGATAAAACTGTCCAAGC GGGGGGGTGACCATGCCAACGATCGCGCGAATAGTTGCCATAAGTATAAT AAGTAGACCTGTTAGCAACCCTCATGCCTCCTCCTTGTTTACCGGTGACA ATTTCGCGTTTTTTTACCCTTTTTCCATGACGTTTTTTTGTGTGTATGTG GGTATCGGTGTGGGTGTGCTTAACTTATAAACAACCCTCGCCTTTTTCTT GTTTACCGGTGGAAATTTCGTGTTTTGACCCTGTTTCCATGGCGTTTTTT GTTGTTGTATGCGTGTATGGGTGCGTGTTTGCCGGTGCTATGTTGCTGTT CGGCGACGAAACAAAGGTTGAAGGGCTCTCTGACGTCACCACCGTTGCGG TGGCGTGTGGAGCGTTTCACTCCCTGGCGATATCGTCGTCTGGTCGTCTG TACGAGTGGGGACTGATCTACACCGATTCCCAGTCAACAGAGGTGTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9868:99..846-

>mRNA_D-dudresnayi_contig9868.28678.1 ID=mRNA_D-dudresnayi_contig9868.28678.1|Name=mRNA_D-dudresnayi_contig9868.28678.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at D-dudresnayi_contig9868:99..846- (Desmarestia dudresnayi DdudBR16 monoicous)
GCCGCGGGCGAGCACCACACCTTGGTCGTCACGCAATACGGCGATGTCGA
GTCCTTCGGCCGAGGGCGGGAGGGGCAGCTCGGACACGGCGAAGGCTCGA
GGCTTGACACGGACGTACCGAGCAAGGTTAGGTTGGGCCGCGGGCGAGCA
CCACACCTTGGTCGTCACGCAATACGGCGATGTCGAGTCCTTCGGCCGAG
GGCGGGAGGGGCAGCTCGGACACGGCGAAGGCTCGAGGCTTGACACGGAC
GTACCGAGCAAGGTTAGGTTGGCGTTTCACTCCCTGGCGATATCGTCGTC
TGGTCGTCTGTACGAGTGGGGACTGATCTACACCGATTCCCAGTCAACAG
AGGTGTGACGTTTCACTCCCTGGCGATATCGTCGTCTGGTCGTCTGTACG
AGTGGGGACTGATCTACACCGATTCCCAGTCAACAGAGGTGTGA
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