mRNA_D-dudresnayi_contig985.28660.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig985.28660.1
Unique NamemRNA_D-dudresnayi_contig985.28660.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig985.28660.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.560e-16
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 FTEWGSFGSFWVGAVAICTGFAGVYITRSESSGGQATGYYFVLSMVTLATSTVSVILGDGA 183
            FTEW   GSFWVGAVA+  G +G+Y+T+ E+SGG AT +Y +LS+VTLA S VS+ LG+GA
Sbjct:   53 FTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGA 113
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig985.28660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE1.560e-1660.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig985contigD-dudresnayi_contig985:126..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_009140.1
Hectar predicted targeting categorysignal peptide
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.8717072-CDS-D-dudresnayi_contig985:125..3081622930943.8717072-CDS-D-dudresnayi_contig985:125..308Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig985 126..308 +
1690557974.7142103-CDS-D-dudresnayi_contig985:125..3081690557974.7142103-CDS-D-dudresnayi_contig985:125..308Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig985 126..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig985.28660.1prot_D-dudresnayi_contig985.28660.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig985 126..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig985.28660.1

>prot_D-dudresnayi_contig985.28660.1 ID=prot_D-dudresnayi_contig985.28660.1|Name=mRNA_D-dudresnayi_contig985.28660.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=61bp
FTEWGSFGSFWVGAVAICTGFAGVYITRSESSGGQATGYYFVLSMVTLAT
STVSVILGDGA
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mRNA from alignment at D-dudresnayi_contig985:126..308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig985.28660.1 ID=mRNA_D-dudresnayi_contig985.28660.1|Name=mRNA_D-dudresnayi_contig985.28660.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at D-dudresnayi_contig985:126..308+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTCACAGAGTGGGGAAGTTTCGGGTCTTTCTGGGTGGGCGCGGTGGCGAT
ATGCACGGGGTTCGCCGGCGTGTATATAACGAGATCCGAGTCGTCCGGGG
GCCAGGCAACGGGCTACTACTTTGTTTTATCTATGGTTACGTTGGCAACG
TCCACCGTGTCCGTGATTCTTGGTGACGGGGCA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig985:126..308+

>mRNA_D-dudresnayi_contig985.28660.1 ID=mRNA_D-dudresnayi_contig985.28660.1|Name=mRNA_D-dudresnayi_contig985.28660.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at D-dudresnayi_contig985:126..308+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTCACAGAGTGGGGAAGTTTCGGGTCTTTCTGGGTGGGCGCGGTGGCGAT
ATGCACGGGGTTCGCCGGCGTGTATATAACGAGATCCGAGTCGTCCGGGG
GCCAGGCAACGGGCTACTACTTTGTTTTATCTATGGTTACGTTGGCAACG
TCCACCGTGTCCGTGATTCTTGGTGACGGGGCATTCACAGAGTGGGGAAG
TTTCGGGTCTTTCTGGGTGGGCGCGGTGGCGATATGCACGGGGTTCGCCG
GCGTGTATATAACGAGATCCGAGTCGTCCGGGGGCCAGGCAACGGGCTAC
TACTTTGTTTTATCTATGGTTACGTTGGCAACGTCCACCGTGTCCGTGAT
TCTTGGTGACGGGGCA
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