mRNA_D-dudresnayi_contig9847.28659.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9847.28659.1
Unique NamemRNA_D-dudresnayi_contig9847.28659.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9847.28659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9847contigD-dudresnayi_contig9847:3971..4660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9847.28659.1prot_D-dudresnayi_contig9847.28659.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9847 3971..4660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.762744-CDS-D-dudresnayi_contig9847:3970..40631622930943.762744-CDS-D-dudresnayi_contig9847:3970..4063Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9847 3971..4063 +
1690557974.6824913-CDS-D-dudresnayi_contig9847:3970..40631690557974.6824913-CDS-D-dudresnayi_contig9847:3970..4063Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9847 3971..4063 +
1622930943.8042061-CDS-D-dudresnayi_contig9847:4276..43841622930943.8042061-CDS-D-dudresnayi_contig9847:4276..4384Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9847 4277..4384 +
1690557974.691731-CDS-D-dudresnayi_contig9847:4276..43841690557974.691731-CDS-D-dudresnayi_contig9847:4276..4384Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9847 4277..4384 +
1622930943.8208504-CDS-D-dudresnayi_contig9847:4582..46601622930943.8208504-CDS-D-dudresnayi_contig9847:4582..4660Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9847 4583..4660 +
1690557974.7031336-CDS-D-dudresnayi_contig9847:4582..46601690557974.7031336-CDS-D-dudresnayi_contig9847:4582..4660Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9847 4583..4660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9847.28659.1

>prot_D-dudresnayi_contig9847.28659.1 ID=prot_D-dudresnayi_contig9847.28659.1|Name=mRNA_D-dudresnayi_contig9847.28659.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=93bp
RGYTSPLSGDVGGDGVCATVIGNLTRIKELVVDGAFSSVKPKGDTAVSIY
PVGLRGSPEDISYENMQTLKPGRPLSDNVVNPYFSLLAARDKQ
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mRNA from alignment at D-dudresnayi_contig9847:3971..4660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9847.28659.1 ID=mRNA_D-dudresnayi_contig9847.28659.1|Name=mRNA_D-dudresnayi_contig9847.28659.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at D-dudresnayi_contig9847:3971..4660+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGAGGTTACACGTCACCACTCTCGGGAGATGTGGGAGGTGATGGAGTTTG
CGCGACAGTGATTGGCAACCTAACAAGAATTAAAGAACTTGTGGTGAGAA
GAGGACAAACTTAGTTGGGATTCATATCACAAAATAAGAGACAACAATCT
GGCAGTGTAGATGCAGTAATTAGTCCTGTTCAATATTGCAGTCCTCCACA
AGTTCGATCGTACTATATGCCTTCCCACATACGTGCCGTGTACCGCACGT
TAATCCTGACCCTTTACGATGTACGTGTCACGACCGGCCGATTAACCTCG
CGGCAGGTGGACGGCGCCTTCTCTAGCGTTAAGCCTAAGGGCGATACCGC
CGTCTCTATATATCCCGTCGGACTACGAGGAAGCCCCGAAGACATATCCT
ACGAGAACATGCAGGTAACCTATTTTGTAAAAAAAAAAAAAAGCTTCCTG
CTACCATCTCGCACCAGATAAATATGTCATGGCCACGCTCTGTTTCCTTA
TTAATGTTGTCTTCTGTCAACTCATACGTCCACCTTTGTTCCCCAGACAC
TGAAGCTGTTTCCTTGTTTATTTTGACCTCTGTCAACTCGTACGTCCACC
TTTGTTCCCCAGACACTGAAGCCGGGTCGACCTCTTTCGGACAACGTCGT
AAACCCATATTTTTCTCTTCTGGCCGCACGAGACAAACAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9847:3971..4660+

>mRNA_D-dudresnayi_contig9847.28659.1 ID=mRNA_D-dudresnayi_contig9847.28659.1|Name=mRNA_D-dudresnayi_contig9847.28659.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at D-dudresnayi_contig9847:3971..4660+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGAGGTTACACGTCACCACTCTCGGGAGATGTGGGAGGTGATGGAGTTTG
CGCGACAGTGATTGGCAACCTAACAAGAATTAAAGAACTTGTGAGAGGTT
ACACGTCACCACTCTCGGGAGATGTGGGAGGTGATGGAGTTTGCGCGACA
GTGATTGGCAACCTAACAAGAATTAAAGAACTTGTGGTGGACGGCGCCTT
CTCTAGCGTTAAGCCTAAGGGCGATACCGCCGTCTCTATATATCCCGTCG
GACTACGAGGAAGCCCCGAAGACATATCCTACGAGAACATGCAGGTGGAC
GGCGCCTTCTCTAGCGTTAAGCCTAAGGGCGATACCGCCGTCTCTATATA
TCCCGTCGGACTACGAGGAAGCCCCGAAGACATATCCTACGAGAACATGC
AGACACTGAAGCCGGGTCGACCTCTTTCGGACAACGTCGTAAACCCATAT
TTTTCTCTTCTGGCCGCACGAGACAAACAGACACTGAAGCCGGGTCGACC
TCTTTCGGACAACGTCGTAAACCCATATTTTTCTCTTCTGGCCGCACGAG
ACAAACAG
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