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Homology
BLAST of mRNA_D-dudresnayi_contig9844.28657.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI) HSP 1 Score: 246 bits (628), Expect = 2.790e-75 Identity = 143/217 (65.90%), Postives = 166/217 (76.50%), Query Frame = 3
Query: 918 HLSRIELEGEGKLLGSMALCLGMVMAVGAAMGAAGVAFSQDDVGRLPLLGAVYLSAPLSLADFVTAMTFVVKRSEVLRLDRQHEENRGRRPXXXXXXXXXXXXSSQSAADSFRRLYDVFLFMALALSVLEALMLRLGRRRLADAAAR-RKERG-SRSLLSTDALESLLDEEDVRRAGYEGWPGESVQQQNLVMEQRYEQLRRANMEKNEGLLEHTRG 1562
HL+RI LEGEGKLLGS+AL LG +MA+GA GAAG FS D+ GRLPLLGAVYLSAPLSLAD + +TF+VKRSEVLRLD +HE++RG RP +S ADSFRRLYD FL MALA SVLEALM RLG RR+A A R R+ +G SL+ +ESLLDEEDVRR G+E W G++VQQ L+MEQRYEQLRR+N+EKNEGLLEHTRG
Sbjct: 2 HLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLIAGVTFIVKRSEVLRLDLEHEQSRGGRPHPGPPSPVPGGDDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGESLVYGSGMESLLDEEDVRRNGWEDWRGDTVQQ-GLMMEQRYEQLRRSNLEKNEGLLEHTRG 217
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_005900.1 |
| Exons | 4 |
| Model size | 1583 |
| Cds size | 819 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930943.478838-UTR-D-dudresnayi_contig9844:600..1364 | 1622930943.478838-UTR-D-dudresnayi_contig9844:600..1364 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9844 601..1364 + |
| 1690557974.5722744-UTR-D-dudresnayi_contig9844:600..1364 | 1690557974.5722744-UTR-D-dudresnayi_contig9844:600..1364 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9844 601..1364 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9844.28657.1 >prot_D-dudresnayi_contig9844.28657.1 ID=prot_D-dudresnayi_contig9844.28657.1|Name=mRNA_D-dudresnayi_contig9844.28657.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=273bp
MRPSTTSTRWARRVRLDSNSRAGPSPTFIPLTIFRGLVGLAFICFGEFFW
THLSRIELEGEGKLLGSMALCLGMVMAVGAAMGAAGVAFSQDDVGRLPLL
GAVYLSAPLSLADFVTAMTFVVKRSEVLRLDRQHEENRGRRPKPGPEPSP
DPDESSQSAADSFRRLYDVFLFMALALSVLEALMLRLGRRRLADAAARRK
ERGSRSLLSTDALESLLDEEDVRRAGYEGWPGESVQQQNLVMEQRYEQLR
RANMEKNEGLLEHTRGGNQNTL* back to topmRNA from alignment at D-dudresnayi_contig9844:601..3867+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9844.28657.1 ID=mRNA_D-dudresnayi_contig9844.28657.1|Name=mRNA_D-dudresnayi_contig9844.28657.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3267bp|location=Sequence derived from alignment at D-dudresnayi_contig9844:601..3867+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGACTGGTTCGCAGCGAGGAGCCGCGAGACACGCGAACGACACGCGCGTG
AACTGTTCGCTGTGTTGCCGTCCGCCCCCTAATAAGACACGCTGAGCACC
CGCCCCCTTCCTTGTGAAACGCGTACTATTAATATCTACCTACCTACCTG
TTAATTGTCTTTGCTTTGTTCGTGTTGGCTCGTTTTCTGTTTATTGTTTT
CTGTTTTCATAGCCCTTGCTTTCCCCCCGGACGCGGACAACAAGATGGAA
TCGGTGGGGGTGGTGGATTGAAATCCGTAGTAGTAGTACCACCTACTGTA
CCTGTTGTTGTTGTTGTAGTTGCCGCCGGGGGTCTGCCAGCCCTTCGGAT
TAATTAATTTTCACTTCCGAAGGAGACGATATCTTCGTCCTGTTCTTTTT
ACTCTAGCTCCATCTCTCTTCGTAACTCAGATCCGGGGTCACATAGCAGG
CGCTCCACCCGCCTTCCCACTACGGTGCGTGCCTACATTTTTATCGCGAG
AAGAGTGCAGCACTGTCTTCCCTCGTCGACTTTCATCGAATACATCGTTC
AATGTTGCCCCCTACGTCCCTGTTCTAGAATCCATCCCAGTTCTTCAGAA
ACCCATGATTAATCTGGGTACCCGCACCTCTCTTGCAGCAATGTACTTGC
TGACTTGCTTCTTCTTTGTCCCAACAGAGAACAGAGAGGGGTTCTTCGGC
GACGGGCTTATACCAACGAACACACCCAACCCACGCCGCTACTTTGAAAA
GAGGGAGCTTTGTCATGCGCCCAAGTACTACTTCAACAAGATGGGCGAGG
CGGGTTCGCCTTGATAGCAATTCCCGCGCCGGCCCATCTCCGACTTTCAT
TCCTCTGACAATTTTCCGCGGGTTAGTGGGACTGGCCTTCATCTGCTTCG
GAGAATTCTTCTGGACGCACCTCTCCCGCATCGAGCTAGAGGGAGAGGGT
AAACTGCTGGGATCGATGGCGTTGTGTTTGGGAATGGTGATGGCTGTGGG
AGCTGCGATGGGGGCCGCGGGGGTTGCGGTGAGTTTGATGTGTATGGTTC
TTGGTTCAAGCTCCTTGTAGCTCTTCGTGTAGCTCTTACTATTGCAAGGG
CTCTGCCCTCGGGCGGCCTCGTTCTCCGTGAAGGAACGAAAGCAGCATCA
ATGATGCATTCATGAATCCAGGCATGTGAGAAGGTGCGAAGGAGAAGAAT
GCCAAGAGATGAAGATAGAGCCATCATCGTTTTTTATTGAAGAGGACAGA
ACGGATTGCGGACAATATGATTAGTATCATACCTGGTAGTTGTTTGTGCT
TGATACCGACACAGCTTGATGCTTGCTGGAGGAAGTGGCTGCATCCCTCA
TCCCTCATGTTAGTTTTTACGGTCGGATTGTTAACGTACGGCTTGGGCAG
TTAGATCCCTGAAATAACACCTCGGCCTTGTTTCGGAGAATGTTTGCCAT
CGTTACAATCGCGATACTGTATCCAATCTTACCGAGCCACACAATAGACA
AGGCAAAGTTTGACAGGAGACAGGCAAAGAACGTTTTTCCCTTGTCGCAA
CACTAGAGTCTGTAATTTGCAGGAGCTGCTGCAACAACAACAGTTGTACG
TATGCTAGGGTAGCGCCAAGCCTCTGTTCCTTGCGAACCTGACACCATCG
TAAGCTCTAATGCTGTATTGTACCCACTCAAAGACTAAAAGGTGCACCCT
GGTGTAATACGAGTACCTTTTTGTTGTTATATTTTTCAGTTTTCGCAGGA
CGATGTGGGGCGACTGCCGTTGCTCGGGGCGGTGTACCTGTCGGCGCCCC
TCTCCCTGGCAGACTTCGTGACGGCAATGACATTCGTGGTGAAGAGATCA
GAGGTGGGAACGGCATGGCACGGTGGTGTTATTTACTCTATTAATATTAG
TAGCGAAACTTCCTGCGAGTTTGTGTGTTTAGTAATGTGTTGGTTCGTCT
CATGTCGCACTTACTGAGACGTCACGGGCCCTGTTCCTCGTGTGATACTT
CACCTACATTCACATCGTAAATATACTGATAGCCGCATTATGACAACTTG
GTACTTTCGTAAGTAGTAAATATACCTCTTGCAAAGCGCTCTGTGAACCG
TTGTAGTGTTAGTTCCACCTCGGTTCTGTCGTTACACACCAATATTCCGA
CCTTCCGGCCTACCAGGTGTCCGTTAACGGCGACGAAAACATTCATGCGT
TTATACATATTATACGATACTGACTACGTACCGTTGTTGTGTACAATTAT
TGACCGAGTTGCTTTACCGTCGTCTACAAGCACCCGCCGCTCCCAGTAGT
GTACAGGTATGTAGAACCTTCCTCGAATTCACCCAAGAACAGTTTTTTTT
TTAACTGCAACCCTGTTGGTTTTCCCGGTGTTGTCGACTTCACGACGGCT
TGCTGCGCTAAACCAGGTGCTACGCTTGGACAGACAACACGAAGAAAATC
GCGGCAGGAGACCCAAGCCGGGCCCAGAGCCAAGTCCAGACCCAGATGAA
TCCTCCCAATCAGCAGCAGACTCCTTCCGCCGTCTGTACGACGTATTTCT
CTTCATGGCACTGGCCTTGTCTGTTCTGGAGGCCCTCATGTTGAGATTGG
GGAGGCGTCGCCTAGCCGATGCGGCGGCTCGGCGTAAGGAGCGGGGGTCG
CGAAGTTTGCTGTCGACGGATGCGCTGGAGTCATTGCTTGATGAGGAAGA
TGTGCGACGGGCGGGATATGAGGGCTGGCCCGGGGAATCCGTGCAACAGG
TTTGTCTCAATTATCTCTTTCCTTTTCACTCACAGAAGTACGGTCAAGCG
TGCCTCCAGTTTTGCCATGCGGCGGAAGGCGTTAGTTGACAATAACAATA
CCGAGGTGCTGGAGTCTATCGGTCTATCGGTCACCCTAAAAGAACGTCGT
CGAAAACACAAACACTTTCGTTCTCGATACAACAGTAGTAGGGGCTTTTC
ACAGTACGAAGCGATATAGTTGTGTTTTTGGGCAGTCCTTGCCAAGAGGA
TATGGATTTGCGCGGCCGACTTGGTTGGGCGTATTGATAGAGTATATCAG
AGGTTCACGAGATCTGCCTGGCGTCATCACACGGGATTTCTAAAACATGT
GATGTGCGTGTTTTTTGCTACGGCCCCGTCGATTCCATGCGATTGGCACG
TGGGGCGAGCAGAACCTGGTTATGGAGCAAAGATACGAGCAGCTTCGGAG
GGCAAACATGGAGAAGAACGAGGGCTTGCTAGAGCACACCAGGGGTGGCA
ACCAGAACACCTTGTAG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9844:601..3867+ >mRNA_D-dudresnayi_contig9844.28657.1 ID=mRNA_D-dudresnayi_contig9844.28657.1|Name=mRNA_D-dudresnayi_contig9844.28657.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at D-dudresnayi_contig9844:601..3867+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCGCCCAAGTACTACTTCAACAAGATGGGCGAGGCGGGTTCGCCTTGA
TAGCAATTCCCGCGCCGGCCCATCTCCGACTTTCATTCCTCTGACAATTT
TCCGCGGGTTAGTGGGACTGGCCTTCATCTGCTTCGGAGAATTCTTCTGG
ACGCACCTCTCCCGCATCGAGCTAGAGGGAGAGGGTAAACTGCTGGGATC
GATGGCGTTGTGTTTGGGAATGGTGATGGCTGTGGGAGCTGCGATGGGGG
CCGCGGGGGTTGCGATGCGCCCAAGTACTACTTCAACAAGATGGGCGAGG
CGGGTTCGCCTTGATAGCAATTCCCGCGCCGGCCCATCTCCGACTTTCAT
TCCTCTGACAATTTTCCGCGGGTTAGTGGGACTGGCCTTCATCTGCTTCG
GAGAATTCTTCTGGACGCACCTCTCCCGCATCGAGCTAGAGGGAGAGGGT
AAACTGCTGGGATCGATGGCGTTGTGTTTGGGAATGGTGATGGCTGTGGG
AGCTGCGATGGGGGCCGCGGGGGTTGCGTTTTCGCAGGACGATGTGGGGC
GACTGCCGTTGCTCGGGGCGGTGTACCTGTCGGCGCCCCTCTCCCTGGCA
GACTTCGTGACGGCAATGACATTCGTGGTGAAGAGATCAGAGTTTTCGCA
GGACGATGTGGGGCGACTGCCGTTGCTCGGGGCGGTGTACCTGTCGGCGC
CCCTCTCCCTGGCAGACTTCGTGACGGCAATGACATTCGTGGTGAAGAGA
TCAGAGGTGCTACGCTTGGACAGACAACACGAAGAAAATCGCGGCAGGAG
ACCCAAGCCGGGCCCAGAGCCAAGTCCAGACCCAGATGAATCCTCCCAAT
CAGCAGCAGACTCCTTCCGCCGTCTGTACGACGTATTTCTCTTCATGGCA
CTGGCCTTGTCTGTTCTGGAGGCCCTCATGTTGAGATTGGGGAGGCGTCG
CCTAGCCGATGCGGCGGCTCGGCGTAAGGAGCGGGGGTCGCGAAGTTTGC
TGTCGACGGATGCGCTGGAGTCATTGCTTGATGAGGAAGATGTGCGACGG
GCGGGATATGAGGGCTGGCCCGGGGAATCCGTGCAACAGGTGCTACGCTT
GGACAGACAACACGAAGAAAATCGCGGCAGGAGACCCAAGCCGGGCCCAG
AGCCAAGTCCAGACCCAGATGAATCCTCCCAATCAGCAGCAGACTCCTTC
CGCCGTCTGTACGACGTATTTCTCTTCATGGCACTGGCCTTGTCTGTTCT
GGAGGCCCTCATGTTGAGATTGGGGAGGCGTCGCCTAGCCGATGCGGCGG
CTCGGCGTAAGGAGCGGGGGTCGCGAAGTTTGCTGTCGACGGATGCGCTG
GAGTCATTGCTTGATGAGGAAGATGTGCGACGGGCGGGATATGAGGGCTG
GCCCGGGGAATCCGTGCAACAGCAGAACCTGGTTATGGAGCAAAGATACG
AGCAGCTTCGGAGGGCAAACATGGAGAAGAACGAGGGCTTGCTAGAGCAC
ACCAGGGGTGGCAACCAGAACACCTTGTAGCAGAACCTGGTTATGGAGCA
AAGATACGAGCAGCTTCGGAGGGCAAACATGGAGAAGAACGAGGGCTTGC
TAGAGCACACCAGGGGTGGCAACCAGAACACCTTGTAG back to top
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