mRNA_D-dudresnayi_contig9842.28655.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9842.28655.1
Unique NamemRNA_D-dudresnayi_contig9842.28655.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9842.28655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9842contigD-dudresnayi_contig9842:8835..9474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.3217494-UTR-D-dudresnayi_contig9842:8834..90241622930943.3217494-UTR-D-dudresnayi_contig9842:8834..9024Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9842 8835..9024 +
1690557974.5217865-UTR-D-dudresnayi_contig9842:8834..90241690557974.5217865-UTR-D-dudresnayi_contig9842:8834..9024Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9842 8835..9024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.33768-CDS-D-dudresnayi_contig9842:9024..94741622930943.33768-CDS-D-dudresnayi_contig9842:9024..9474Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 9025..9474 +
1690557974.5302398-CDS-D-dudresnayi_contig9842:9024..94741690557974.5302398-CDS-D-dudresnayi_contig9842:9024..9474Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 9025..9474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9842.28655.1prot_D-dudresnayi_contig9842.28655.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9842 9025..9474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9842.28655.1

>prot_D-dudresnayi_contig9842.28655.1 ID=prot_D-dudresnayi_contig9842.28655.1|Name=mRNA_D-dudresnayi_contig9842.28655.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=150bp
MVMFVGLDTRYIVTKTPKDTITTTVRAANGHSHPLHAVHLAQSESTYLHT
LYIQSSRAYIHGCRRRTQPSGAPESPNSLLVCLPSTDPPTYNSPHYRANR
TGHGPQVNTSTASISRFLVNFAPQRLRQLMLTHHQLHPPRVRYPPLYFLR
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mRNA from alignment at D-dudresnayi_contig9842:8835..9474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9842.28655.1 ID=mRNA_D-dudresnayi_contig9842.28655.1|Name=mRNA_D-dudresnayi_contig9842.28655.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at D-dudresnayi_contig9842:8835..9474+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTTTATTGGTCGTTCTGTAGTCTGTAGAGTGGGTTGAACTGGTAGGAAA
TAGGCCATGCACGGCCACGGTGACCGCACCGCCTCTCGAAGCGCCTCTTT
TAAGATTAGTTGCACTCCGAGTCATGCACCAAATGACTCGCGAGTGTGCA
GTTTCTTGATAGCTTAACATACACATCCCAATTATGCCGAATGGTGATGT
TTGTGGGACTTGACACACGATATATAGTAACAAAAACACCCAAAGACACA
ATTACAACCACCGTACGTGCGGCCAATGGACATTCTCACCCGCTGCACGC
GGTACACCTAGCCCAATCCGAATCCACCTATCTACATACACTATACATAC
AGAGCTCAAGAGCATATATACATGGGTGTCGCCGCCGAACACAACCGAGT
GGGGCCCCGGAATCCCCAAACAGCCTCCTAGTCTGCCTACCCTCGACCGA
CCCTCCAACATACAATAGCCCTCACTATAGAGCAAACAGAACAGGGCACG
GCCCGCAAGTAAATACCTCTACAGCATCAATCAGTCGCTTTCTTGTGAAT
TTTGCTCCACAGCGTCTTCGTCAGCTGATGCTGACACATCATCAACTCCA
TCCACCCCGAGTGCGTTATCCGCCGCTGTATTTCCTTCGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9842:8835..9474+

>mRNA_D-dudresnayi_contig9842.28655.1 ID=mRNA_D-dudresnayi_contig9842.28655.1|Name=mRNA_D-dudresnayi_contig9842.28655.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at D-dudresnayi_contig9842:8835..9474+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGATGTTTGTGGGACTTGACACACGATATATAGTAACAAAAACACC
CAAAGACACAATTACAACCACCGTACGTGCGGCCAATGGACATTCTCACC
CGCTGCACGCGGTACACCTAGCCCAATCCGAATCCACCTATCTACATACA
CTATACATACAGAGCTCAAGAGCATATATACATGGGTGTCGCCGCCGAAC
ACAACCGAGTGGGGCCCCGGAATCCCCAAACAGCCTCCTAGTCTGCCTAC
CCTCGACCGACCCTCCAACATACAATAGCCCTCACTATAGAGCAAACAGA
ACAGGGCACGGCCCGCAAGTAAATACCTCTACAGCATCAATCAGTCGCTT
TCTTGTGAATTTTGCTCCACAGCGTCTTCGTCAGCTGATGCTGACACATC
ATCAACTCCATCCACCCCGAGTGCGTTATCCGCCGCTGTATTTCCTTCGT
ATGGTGATGTTTGTGGGACTTGACACACGATATATAGTAACAAAAACACC
CAAAGACACAATTACAACCACCGTACGTGCGGCCAATGGACATTCTCACC
CGCTGCACGCGGTACACCTAGCCCAATCCGAATCCACCTATCTACATACA
CTATACATACAGAGCTCAAGAGCATATATACATGGGTGTCGCCGCCGAAC
ACAACCGAGTGGGGCCCCGGAATCCCCAAACAGCCTCCTAGTCTGCCTAC
CCTCGACCGACCCTCCAACATACAATAGCCCTCACTATAGAGCAAACAGA
ACAGGGCACGGCCCGCAAGTAAATACCTCTACAGCATCAATCAGTCGCTT
TCTTGTGAATTTTGCTCCACAGCGTCTTCGTCAGCTGATGCTGACACATC
ATCAACTCCATCCACCCCGAGTGCGTTATCCGCCGCTGTATTTCCTTCGT
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