mRNA_D-dudresnayi_contig9837.28645.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9837.28645.1
Unique NamemRNA_D-dudresnayi_contig9837.28645.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 115 bits (289), Expect = 1.450e-28
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = -1
Query:   19 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEKMNNAADAAVGV 291
            P  ++++A IAALPGGSLFPD+LA+K+I+TYD NGDGL+Q+SEFAPTEELR RLENMFR+QQE  R+ARV ERQRQM++K+  AA+   G 
Sbjct:  149 PDREEIDARIAALPGGSLFPDDLARKLIDTYDQNGDGLLQRSEFAPTEELRTRLENMFRDQQETARQARVEERQRQMEDKL--AAEVGTGA 237          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: A0A6H5KKK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.900e-27
Identity = 58/92 (63.04%), Postives = 71/92 (77.17%), Query Frame = -1
Query:   16 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEKMNNAADAAVGVP 291
            P+ K+ +  IA LPGG+LFPDELA K+I TYD NG+GL+QQSEFAPTEELR RLEN+F +Q+E +R AR+ ERQRQMD+ M   A A V  P
Sbjct:    5 PSKKEADERIAGLPGGTLFPDELALKLIQTYDHNGNGLLQQSEFAPTEELRTRLENLFSQQREEKRLARMEERQRQMDDNMRPDAGAVVVSP 96          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.670e-26
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = -1
Query:   16 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEKMNNAADAAVGVP 291
            P+ ++V+  IA LPGG+LFPDELA K+I TYD NGDGL+QQSEFAPTEELR RLEN+  +Q+E ER AR+ ERQRQMD+KM     A V  P
Sbjct:  151 PSKEEVDERIAGLPGGTLFPDELALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLLSQQREDERLARLEERQRQMDDKMRPDTGAVVVSP 242          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: A0A6H5KCI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.980e-26
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = -1
Query:   16 WAASPTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEKMNNAADAAVGVP 303
            W+    A   +  IA LPGG+LFPDELA K+I TYD NG+GL+QQSEFAPTEELR RLEN+F +Q+E +R AR+ ERQRQMD+ M   A A V  P
Sbjct:   11 WSLQTVALGQDERIAGLPGGTLFPDELALKLIQTYDHNGNGLLQQSEFAPTEELRTRLENLFSQQREEKRLARMEERQRQMDDNMRPDAGAVVVSP 106          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: A0A6H5JBJ0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.000e-24
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -1
Query:   25 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEKMNNAADAAV 291
            P+ ++V+  IA LPGG+LFPDELA K+I TYD NGDGL+Q SEFAPTEELR RLE++F +Q+E ER AR+ ERQR+MD+KM     A V
Sbjct:   87 PSKEEVDERIAGLPGGTLFPDELALKLIQTYDQNGDGLLQLSEFAPTEELRTRLEDLFSQQREDERVARMEERQRRMDDKMRPDTGAVV 175          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.980e-22
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = -1
Query:   52 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEK 291
            PT ++VEA I  LPG +LFPD+LA+++I  YD NGDG++QQSEFAPTEELR RLE++FRE++E E EAR  ER+R+MD K
Sbjct:  146 PTPEEVEAKILELPGRALFPDDLAERLIKLYDQNGDGVLQQSEFAPTEELRARLESIFRERREEELEARQAERKREMDAK 225          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.660e-20
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = -1
Query:   82 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARV 291
            P+ ++V+  IA LPGG+LFPD+LA K+I TYD NGDGL+QQSEFAPTEELR RLEN+F +Q+E ER AR+
Sbjct:  151 PSKEEVDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARM 220          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.100e-20
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = -1
Query:   82 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARV 291
            P+ ++V+  IA LPGG+LFPD+LA K+I TYD NGDGL+QQSEFAPTEELR RLEN+F +Q+E ER AR+
Sbjct:  151 PSKEEVDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARM 220          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.930e-11
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = -1
Query:   28 PTAKKVEA*IAALPGGSLFPDELAQKVINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARVVERQRQMDEKMNNAADAA 291
            P+  +V+  I+ +PGGSL P ELAQK+I +YD NGDG++Q SEFA   ++R+RL+++F ++ +  R      R+R+++   N  AD A
Sbjct:  161 PSPAEVDERISEMPGGSLLPMELAQKLIESYDTNGDGVLQPSEFASKADMRVRLDSLFADRAQEARLEAAAAREREIE---NRGADKA 245          
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.960e-9
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = -1
Query:   82 VINTYDGNGDGLVQQSEFAPTEELRMRLENMFREQQEREREARV 213
            ++ +YD NGDGL+QQSEFAPTEELR RLEN+F +Q+E ER AR+
Sbjct:   40 LVRSYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARM 83          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9837.28645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2I6U1M4_SACJA1.450e-2867.03Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
A0A6H5KKK9_9PHAE1.900e-2763.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG5_ECTSI6.670e-2664.13EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5KCI4_9PHAE6.980e-2660.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBJ0_9PHAE1.000e-2462.92EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JY95_9PHAE6.980e-2263.75EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LS20_ECTSI4.660e-2067.14EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LS19_ECTSI5.100e-2067.14EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
D8LTM8_ECTSI4.930e-1142.05TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
A0A6H5KUU9_9PHAE4.960e-968.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9837contigD-dudresnayi_contig9837:2120..2434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.3307445-CDS-D-dudresnayi_contig9837:2119..24341622930942.3307445-CDS-D-dudresnayi_contig9837:2119..2434Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9837 2120..2434 +
1690557974.1858861-CDS-D-dudresnayi_contig9837:2119..24341690557974.1858861-CDS-D-dudresnayi_contig9837:2119..2434Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9837 2120..2434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9837.28645.1prot_D-dudresnayi_contig9837.28645.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9837 2120..2434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9837.28645.1

>prot_D-dudresnayi_contig9837.28645.1 ID=prot_D-dudresnayi_contig9837.28645.1|Name=mRNA_D-dudresnayi_contig9837.28645.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=105bp
MVASPGHPNRRVRGVVHFLVHLPLPLHHARFPLPLLLLTKHILKPHPQLL
RGGELGLLHEPVTVAVVRVDHLLGKLIGEQRAPREGGDSCFDFLRSRACG
PCGR*
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mRNA from alignment at D-dudresnayi_contig9837:2120..2434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9837.28645.1 ID=mRNA_D-dudresnayi_contig9837.28645.1|Name=mRNA_D-dudresnayi_contig9837.28645.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at D-dudresnayi_contig9837:2120..2434+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGGCGTCGCCAGGGCACCCCAACCGCCGCGTCCGCGGCGTTGTTCA TTTTCTCGTCCATCTGCCGCTGCCGCTCCACCACGCGCGCTTCCCGCTCC CGCTCCTGCTGCTCACGAAACATATTCTCAAGCCTCATCCTCAGCTCCTC CGTGGGGGCGAACTCGGACTGCTGCACGAGCCCGTCACCGTTGCCGTCGT ACGTGTTGATCACCTTCTGGGCAAGCTCATCGGGGAACAACGAGCCCCCC GGGAGGGCGGCGATTCATGCTTCGACTTTCTTCGCAGTCGGGCTTGCGGC CCATGCGGGCGGTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9837:2120..2434+

>mRNA_D-dudresnayi_contig9837.28645.1 ID=mRNA_D-dudresnayi_contig9837.28645.1|Name=mRNA_D-dudresnayi_contig9837.28645.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at D-dudresnayi_contig9837:2120..2434+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGGCGTCGCCAGGGCACCCCAACCGCCGCGTCCGCGGCGTTGTTCA
TTTTCTCGTCCATCTGCCGCTGCCGCTCCACCACGCGCGCTTCCCGCTCC
CGCTCCTGCTGCTCACGAAACATATTCTCAAGCCTCATCCTCAGCTCCTC
CGTGGGGGCGAACTCGGACTGCTGCACGAGCCCGTCACCGTTGCCGTCGT
ACGTGTTGATCACCTTCTGGGCAAGCTCATCGGGGAACAACGAGCCCCCC
GGGAGGGCGGCGATTCATGCTTCGACTTTCTTCGCAGTCGGGCTTGCGGC
CCATGCGGGCGGTGAATGGTGGCGTCGCCAGGGCACCCCAACCGCCGCGT
CCGCGGCGTTGTTCATTTTCTCGTCCATCTGCCGCTGCCGCTCCACCACG
CGCGCTTCCCGCTCCCGCTCCTGCTGCTCACGAAACATATTCTCAAGCCT
CATCCTCAGCTCCTCCGTGGGGGCGAACTCGGACTGCTGCACGAGCCCGT
CACCGTTGCCGTCGTACGTGTTGATCACCTTCTGGGCAAGCTCATCGGGG
AACAACGAGCCCCCCGGGAGGGCGGCGATTCATGCTTCGACTTTCTTCGC
AGTCGGGCTTGCGGCCCATGCGGGCGGTGA
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