mRNA_D-dudresnayi_contig9828.28639.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9828.28639.1
Unique NamemRNA_D-dudresnayi_contig9828.28639.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9828.28639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9828contigD-dudresnayi_contig9828:4802..7200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size270
Cds size141
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9828.28639.1prot_D-dudresnayi_contig9828.28639.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9828 5195..7200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.9826643-UTR-D-dudresnayi_contig9828:4801..48781622930940.9826643-UTR-D-dudresnayi_contig9828:4801..4878Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9828 4802..4878 -
1690557973.6435819-UTR-D-dudresnayi_contig9828:4801..48781690557973.6435819-UTR-D-dudresnayi_contig9828:4801..4878Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9828 4802..4878 -
1622930941.005085-UTR-D-dudresnayi_contig9828:5143..51941622930941.005085-UTR-D-dudresnayi_contig9828:5143..5194Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9828 5144..5194 -
1690557973.6521451-UTR-D-dudresnayi_contig9828:5143..51941690557973.6521451-UTR-D-dudresnayi_contig9828:5143..5194Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9828 5144..5194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.0251515-CDS-D-dudresnayi_contig9828:5194..52771622930941.0251515-CDS-D-dudresnayi_contig9828:5194..5277Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9828 5195..5277 -
1690557973.6606758-CDS-D-dudresnayi_contig9828:5194..52771690557973.6606758-CDS-D-dudresnayi_contig9828:5194..5277Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9828 5195..5277 -
1622930941.040637-CDS-D-dudresnayi_contig9828:7142..72001622930941.040637-CDS-D-dudresnayi_contig9828:7142..7200Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9828 7143..7200 -
1690557973.6690266-CDS-D-dudresnayi_contig9828:7142..72001690557973.6690266-CDS-D-dudresnayi_contig9828:7142..7200Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9828 7143..7200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9828.28639.1

>prot_D-dudresnayi_contig9828.28639.1 ID=prot_D-dudresnayi_contig9828.28639.1|Name=mRNA_D-dudresnayi_contig9828.28639.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=47bp
SGPANGGRQAAQRWERRVKGKRGLSPANTAAFNGSESLRGRTTNRR*
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mRNA from alignment at D-dudresnayi_contig9828:4802..7200-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9828.28639.1 ID=mRNA_D-dudresnayi_contig9828.28639.1|Name=mRNA_D-dudresnayi_contig9828.28639.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2399bp|location=Sequence derived from alignment at D-dudresnayi_contig9828:4802..7200- (Desmarestia dudresnayi DdudBR16 monoicous)
TCTGGCCCCGCGAACGGAGGCAGGCAAGCAGCACAACGCTGGGAGAGGCG
CGTGAAAGGTGTGTTAGGAGTAGTTTTTGTCCCCAACAGGACAGATAGAT
GGACAACAGTGTTTGGGCAACTTCGTTGTGTGTCCCAGGTTTCAGTAAAT
GCTGATGCAACCAGTGCGGATTGTGCCCTGCATTGCTGACGCACTATCGT
GCTACTGCTTGTTGTTTCTTCGTTATTATGGAGAGTTGAGCGCTCTCGCG
AGTAGCTACAAGGGTTTGTGAATGCTGTAAAAACACACGCTCAGGATACG
AGCACGAGTAGCACAGCCCAACATTTGATACTCACTCGCGATTGTTGTTG
TGCCCAGCGTGCCTTGCGAGTGGGTTTGCGTTCAATCGCAAGATGTACAC
GAAATGCACCTCGTGCCGTTGACCCACTCGTGCTATTTTATTGCTTCACA
AGTAACGAGTGACGCGTAGGCTGAAGTTCCGCTAGCGGGGAAGTTCCCTG
ATATGCGGTGTTCGGCATACCAAAGTTCGCAGTCTACTTACCTGATGCGT
TCTGCTAGTGGGGAACTAACTCTATGATGGGAATAGTCAGCATCGCTCGT
ATCATGGTGCGATGCATTGGAGCAGCACCAGTACCTACTACGAGCTGTTG
TATACGTCTGTATATACTGCCCTGACTCTAGTGTTGTGTTCACGTGAGGC
ACTTTGAAGAAGCACAATTGTGGCAATAACCTGATACTATCATATTATTT
TTACTTACAAAGACATCAGTATAGATAGGCGTACAATTGTCATACTCGTT
GTCATATCCTGAGCTATTCCGGGGGGGATACCTAGGATCAACAGCTTTGT
ACTCCTATGTGTTATGCTACAAACATTTAGTCGGTGCGCACAAAACACTT
CGTATCATGATACCTGGCACCAGTTAGTCCGTAAGATGGTGGTAGTATAT
CATACTTATCGTGACGCAGCCCGATTAACGCGGGGATGGTTTTGGAGAGT
AAGGCATGACATGCGGGAGTGGAACCTTGCAGAATGTAGATATCAGGCTT
TGTTTCTCCGCGCCGCCTTTGTACTACAAATAATACTGCTGTATTTCTGT
TCGTAGTCTATACCTGGTACTGTATATTAAACGCACATGCGAACGATATA
ACAGCTCGGCTTCTTTGGTCTCCAGAGGGTTATAGTATTGTTGTAACTTA
CGTACAATTTTATATTTACTGGTATTCGTACTCCACTCCATTATTATTTT
TACGACAGCGCCGGGTGTTTTTATTTTCAACAGGAGGCGTTCATTTCGTC
ACCTCTCAACGAGGCATGCTACGGTAGAGGGGCTACCCAGTTTTTTTTAG
GCTCCTCACATGAGGAGCTCTATCTTACCGAAAAGACTCTTCTTGACAAT
AATTTGTACCCCCCTATATACATGCAGCGTGTTCGCAAGGGCCGTCACCT
CCGGTGCTTGTTCCCATGGACATTGAGGAGTCGAGCCTACTCTCGTCACC
ATCGGTGGTTTTGTCCTGTACCCATGCAGGTCAGCAAGGCCACCCGCGCT
GACCTGCATGGGTACGGGACCAATCACCGATGGTGACGACAAGAGGCTTT
ACTCTTCAACGTCCATCGGGACAAGCCCCGGTGGTGACGGCCCCTGCGAA
CACGCGGTCGGCGGTATGTATAGGGGGGGGTTGTTGCTTCTGGAAGTCGG
TCGGTCGGTCGGTCGGCCAGGCGGCCTTTCCAAGGCTGCCGTCGCCTCGC
GCTTGTACATATAGCGAACAAATGTTTGTAGCGCGAATGAATTTTTTTAA
AGATAGTGGGTAGTTCCTCAGTTGAGGAACCCCATCAATCAGAAAGTTCT
GGGCCCAAAAGTACCCCCTCCCCCTACCGTAATATGACTCCTACGCGCTT
GCTGTAATCCTGATTAATCGCAGGGAAGCGCGGCCTTTCGCCCGCCAACA
CCGCCGCGTTTAACGGGAGCGAGAGCCTTCGCGGACGGACAACCAACCGG
CGATAATACAGCAATAGAGAGGACTGGGAACCCCGGTGCCTTGAACCAGA
CAGGCAGGCAAGCAAGAAGGAAGGAAGGAAGGAAGGAACAGTGAGGGAGG
GCGACAAGATAGAGCTTCAAAAACACCACCACCACCACCACAACAAAAAA
ATCTTTGCTACCACACCCATATATGCTCCTCACGAGTCCCGTCCTGTCAC
TTCGAGTCGAGCACCTTCAATCAAAAACCAAAAGATAGCTATCCATCCTA
CGCAACCCACGAGTGCTCCTGGCGCTGAAAAGACACCGAACGTGCGTGTG
CGTTAAAAATACATCAAAACAGGCGACCAGCAAAACGACCCGCCACCATG
TCGTACGAAGATGACGGTGACTACGGCGACGCTGGGGAAGGAGTTGTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9828:4802..7200-

>mRNA_D-dudresnayi_contig9828.28639.1 ID=mRNA_D-dudresnayi_contig9828.28639.1|Name=mRNA_D-dudresnayi_contig9828.28639.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at D-dudresnayi_contig9828:4802..7200- (Desmarestia dudresnayi DdudBR16 monoicous)
TCTGGCCCCGCGAACGGAGGCAGGCAAGCAGCACAACGCTGGGAGAGGCG
CGTGAAAGTCTGGCCCCGCGAACGGAGGCAGGCAAGCAGCACAACGCTGG
GAGAGGCGCGTGAAAGGGAAGCGCGGCCTTTCGCCCGCCAACACCGCCGC
GTTTAACGGGAGCGAGAGCCTTCGCGGACGGACAACCAACCGGCGATAAG
GAAGCGCGGCCTTTCGCCCGCCAACACCGCCGCGTTTAACGGGAGCGAGA
GCCTTCGCGGACGGACAACCAACCGGCGATAA
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