mRNA_D-dudresnayi_contig982.28629.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig982.28629.1
Unique NamemRNA_D-dudresnayi_contig982.28629.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig982.28629.1 vs. uniprot
Match: A0A7S3H9R4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9R4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.960e-12
Identity = 79/195 (40.51%), Postives = 98/195 (50.26%), Query Frame = 3 
Query: 1029 AAPASTPSASTAKSLL--PALTQSVS----YTQLSYIDSHIHYQQQQQ--------YAVPVNAAVAQAYNYAVSTALNSSNNXXXXXXXTSATNSPRPFTTQRSYSADFASN-----NPTTSNAPE-------------FSYSPGNYYGYGSDIRCGMSRTMSSESDTMMAAVFDPKIYDSAEFDNTMGMLEDFE 1517
            AAP STP+A+TAKSLL  PAL  ++S    YT   + +S      +          Y VPVNA V QAYN A+  A   SNN        +  N   P  + RSYS D  S+     +P +S+                F +    YY    DIR G++RTMSSESDTMMA  FDPK+YD   +   MGMLEDFE
Sbjct:    2 AAPVSTPAATTAKSLLSGPALAHALSTQQYYTNTMHSNSATSGNAENNSSRTSSADYVVPVNATVLQAYNAAI--ASTQSNNNSYSPGYNNGLNG-YPLAS-RSYSNDAPSSYNFRTSPNSSHXXXXXXXXXXXXXXXXFHHPYSTYY---PDIRQGLTRTMSSESDTMMANCFDPKLYDDEAYG--MGMLEDFE 187
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig982.28629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3H9R4_9STRA6.960e-1240.51Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig982contigD-dudresnayi_contig982:27924..30533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2610
Cds size1431
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig982.28629.1prot_D-dudresnayi_contig982.28629.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig982 28013..29443 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.1441665-UTR-D-dudresnayi_contig982:27923..280121622930939.1441665-UTR-D-dudresnayi_contig982:27923..28012Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig982 27924..28012 +
1690557972.8945951-UTR-D-dudresnayi_contig982:27923..280121690557972.8945951-UTR-D-dudresnayi_contig982:27923..28012Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig982 27924..28012 +
1622930939.187667-UTR-D-dudresnayi_contig982:29443..305331622930939.187667-UTR-D-dudresnayi_contig982:29443..30533Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig982 29444..30533 +
1690557972.9235277-UTR-D-dudresnayi_contig982:29443..305331690557972.9235277-UTR-D-dudresnayi_contig982:29443..30533Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig982 29444..30533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.162181-CDS-D-dudresnayi_contig982:28012..294431622930939.162181-CDS-D-dudresnayi_contig982:28012..29443Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 28013..29443 +
1690557972.9052932-CDS-D-dudresnayi_contig982:28012..294431690557972.9052932-CDS-D-dudresnayi_contig982:28012..29443Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 28013..29443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig982.28629.1

>prot_D-dudresnayi_contig982.28629.1 ID=prot_D-dudresnayi_contig982.28629.1|Name=mRNA_D-dudresnayi_contig982.28629.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=477bp
MLPTGNTSTTTTTAPIHFKAPSPVPAPTTAPVAEQSTSTEEMDAPVHKRH
RVAFSNVIEELELVSQAVRGNSTANLHSSSTTTTTDPAAHEHISLFNLFQ
RDEPQAIGRLPPLRALVQQARERGCLVAKTTEEENLLSASTTTAAPSSTA
NTDTTTTTTSSGGLNGLEFDDHDFDFAQFMGDDFQMEDNADCPVISLSHP
IDNSSRNSSCDGGSSGSITSTQSYHHSMAPVPAPQSPTSSNSCMTTISSG
ASNNLFGSGPSILDANGGINANSGNLLTVNMMPSSKTPGSNSNTPQTIQR
KRGRPRKHSISHSAAPASTPSASTAKSLLPALTQSVSYTQLSYIDSHIHY
QQQQQYAVPVNAAVAQAYNYAVSTALNSSNNHNSNTNTTSATNSPRPFTT
QRSYSADFASNNPTTSNAPEFSYSPGNYYGYGSDIRCGMSRTMSSESDTM
MAAVFDPKIYDSAEFDNTMGMLEDFE*
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mRNA from alignment at D-dudresnayi_contig982:27924..30533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig982.28629.1 ID=mRNA_D-dudresnayi_contig982.28629.1|Name=mRNA_D-dudresnayi_contig982.28629.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2610bp|location=Sequence derived from alignment at D-dudresnayi_contig982:27924..30533+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTCGAGTGTGAGTTCTTTCAATCCTGCTGCGGTTGCTGTCACTGCGACT
GTCACTGCTTCTGTTCAGAGATATGTGGGTGGTACAAGTATGCTACCTAC
CGGTAATACTTCTACCACTACTACTACAGCTCCGATTCACTTTAAAGCCC
CTTCTCCAGTACCTGCACCTACTACTGCACCTGTAGCTGAGCAATCTACT
AGTACTGAAGAGATGGATGCACCAGTTCACAAGCGTCATCGCGTTGCATT
CTCGAATGTAATCGAGGAGCTTGAGTTAGTTAGCCAGGCTGTGCGTGGAA
ACTCCACTGCTAATCTACACAGTAGCAGTACTACCACTACTACTGACCCT
GCAGCGCATGAACACATCTCCTTATTTAATCTCTTCCAACGCGATGAACC
CCAAGCTATCGGACGTCTCCCTCCACTGCGAGCACTTGTGCAGCAAGCCA
GAGAGCGGGGATGTCTAGTTGCGAAGACTACAGAGGAAGAAAACTTACTC
TCTGCCTCTACTACTACTGCTGCTCCTTCATCTACTGCTAATACTGACAC
TACTACCACTACTACTAGTAGTGGTGGGTTGAATGGACTGGAGTTTGATG
ACCACGATTTTGACTTCGCGCAGTTCATGGGAGATGACTTCCAGATGGAG
GATAATGCGGACTGCCCGGTCATTTCTCTCTCTCATCCTATTGATAATAG
TAGTAGAAATAGTAGTTGTGATGGTGGCAGTAGTGGTAGTATTACTTCCA
CACAGTCATACCATCACTCTATGGCTCCTGTACCTGCTCCACAATCTCCT
ACTTCTTCCAATAGTTGTATGACTACTATTTCTAGTGGAGCTTCAAATAA
TTTATTCGGTAGTGGACCGAGTATTCTCGATGCCAATGGGGGAATTAATG
CGAATAGTGGGAATCTACTCACGGTTAATATGATGCCTTCATCGAAAACT
CCTGGATCTAATAGTAATACCCCTCAAACTATTCAACGCAAGCGTGGTCG
ACCTCGAAAACACTCGATTTCACACTCGGCTGCTCCAGCAAGCACTCCTT
CTGCTTCTACTGCCAAATCTCTACTACCTGCACTAACACAAAGTGTGAGT
TATACACAATTATCATATATTGATAGTCATATACATTATCAACAACAGCA
GCAATATGCAGTACCAGTCAATGCTGCTGTAGCACAAGCATATAACTATG
CTGTCTCTACAGCACTTAATAGTAGTAACAACCACAATAGCAATACTAAT
ACTACTTCTGCCACTAATTCACCACGTCCATTCACAACGCAACGCTCCTA
TAGTGCTGATTTTGCTAGTAACAACCCTACTACTAGTAATGCCCCAGAAT
TCTCGTATTCTCCCGGTAATTACTACGGCTATGGCTCGGATATTCGCTGC
GGAATGTCCCGGACCATGAGCTCCGAGTCGGACACGATGATGGCGGCGGT
TTTTGACCCTAAGATATACGACTCGGCTGAGTTTGACAATACTATGGGTA
TGCTAGAGGACTTCGAATAGTAGTTGTAGTTATCGTACTGCTAGTAGTAG
TGTACGTCTAAGTATAGTGTATATAGTATAGTAGTGTATACTACTTTCTA
CTATATTATACACATAGCAGTGTGGATTATTGATAAGGTCGGTATAGAAG
TATCGGTAAGAATCAAGAATGCACACTACTGCTACTGCATAGAATATATA
TAACTACCCTCACTACTACAACGCAGTGCAGAGGTCTTAGAACAATTTTG
TAGCAACGAAACAACTGTACTGATACTACTGTCATGTAATCACATACTAT
AGTAACAGTAGTACTAGTAGTAGTGGTCACAGTAGTACTATTACTACTAC
TATGTAAAAGACAAAGATAACGAAGATAACACGACGAAGATAAAGAAGTA
GTAGTAATGTATACATATAGCACATTGTTATAACTATATGTACATACACA
TCCTACTAACTACTTTCTCGATATCACAATGTCTACATAGGACTCATATA
ATAAACAAACTAACAAAAACTAATAAAAAAAACTCTGAGAAAAGAAATAA
CTACAACTTCACTAATATTCTAAACACAGTAAAAATTACTGTTACTGCCT
CCACCACTACCTCAATAATAATGTAGTGTGTAGTGGTATTATAGTCTATT
AGTTAAGAAGTTTAACCCACAGAAATGATATTTATTTTTAAACCCACCGT
ACATGGTAATACTATATATATAAACAAGTTAAGTCACACACAAGCAAGGA
TCACAATAATAAGCACTGATACTGTTAATAACAGTAAAGTTAGCGCAATT
TTAAAGGAACATTCAGAAGGAATAGGTGGAATATTTAGTTTAAGTAAGAA
AGCACAAGCTTTATAGTAGTAGTGTTGTTGTTGTGGTCACTTATAGTTGC
TGTTGTAGTGATGTTGCTGCTGCTCTTGACTATTGAATGAGATGAAAATC
TCCTCAGTCAGTGTGTGTATATAGAGAGCTACTACTACTGATACTGATGT
TGCTGCGTCTGAGTTGATGATAGTAATAGTAGTAAGCAAAGCAGGCAGCT
TGCAACGCACACTTCCCTCATTTTTGATATTGTAATTTAAAGCGAATACG
CATACTGTTC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig982:27924..30533+

>mRNA_D-dudresnayi_contig982.28629.1 ID=mRNA_D-dudresnayi_contig982.28629.1|Name=mRNA_D-dudresnayi_contig982.28629.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2862bp|location=Sequence derived from alignment at D-dudresnayi_contig982:27924..30533+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTACCTACCGGTAATACTTCTACCACTACTACTACAGCTCCGATTCA
CTTTAAAGCCCCTTCTCCAGTACCTGCACCTACTACTGCACCTGTAGCTG
AGCAATCTACTAGTACTGAAGAGATGGATGCACCAGTTCACAAGCGTCAT
CGCGTTGCATTCTCGAATGTAATCGAGGAGCTTGAGTTAGTTAGCCAGGC
TGTGCGTGGAAACTCCACTGCTAATCTACACAGTAGCAGTACTACCACTA
CTACTGACCCTGCAGCGCATGAACACATCTCCTTATTTAATCTCTTCCAA
CGCGATGAACCCCAAGCTATCGGACGTCTCCCTCCACTGCGAGCACTTGT
GCAGCAAGCCAGAGAGCGGGGATGTCTAGTTGCGAAGACTACAGAGGAAG
AAAACTTACTCTCTGCCTCTACTACTACTGCTGCTCCTTCATCTACTGCT
AATACTGACACTACTACCACTACTACTAGTAGTGGTGGGTTGAATGGACT
GGAGTTTGATGACCACGATTTTGACTTCGCGCAGTTCATGGGAGATGACT
TCCAGATGGAGGATAATGCGGACTGCCCGGTCATTTCTCTCTCTCATCCT
ATTGATAATAGTAGTAGAAATAGTAGTTGTGATGGTGGCAGTAGTGGTAG
TATTACTTCCACACAGTCATACCATCACTCTATGGCTCCTGTACCTGCTC
CACAATCTCCTACTTCTTCCAATAGTTGTATGACTACTATTTCTAGTGGA
GCTTCAAATAATTTATTCGGTAGTGGACCGAGTATTCTCGATGCCAATGG
GGGAATTAATGCGAATAGTGGGAATCTACTCACGGTTAATATGATGCCTT
CATCGAAAACTCCTGGATCTAATAGTAATACCCCTCAAACTATTCAACGC
AAGCGTGGTCGACCTCGAAAACACTCGATTTCACACTCGGCTGCTCCAGC
AAGCACTCCTTCTGCTTCTACTGCCAAATCTCTACTACCTGCACTAACAC
AAAGTGTGAGTTATACACAATTATCATATATTGATAGTCATATACATTAT
CAACAACAGCAGCAATATGCAGTACCAGTCAATGCTGCTGTAGCACAAGC
ATATAACTATGCTGTCTCTACAGCACTTAATAGTAGTAACAACCACAATA
GCAATACTAATACTACTTCTGCCACTAATTCACCACGTCCATTCACAACG
CAACGCTCCTATAGTGCTGATTTTGCTAGTAACAACCCTACTACTAGTAA
TGCCCCAGAATTCTCGTATTCTCCCGGTAATTACTACGGCTATGGCTCGG
ATATTCGCTGCGGAATGTCCCGGACCATGAGCTCCGAGTCGGACACGATG
ATGGCGGCGGTTTTTGACCCTAAGATATACGACTCGGCTGAGTTTGACAA
TACTATGGGTATGCTAGAGGACTTCGAATAGATGCTACCTACCGGTAATA
CTTCTACCACTACTACTACAGCTCCGATTCACTTTAAAGCCCCTTCTCCA
GTACCTGCACCTACTACTGCACCTGTAGCTGAGCAATCTACTAGTACTGA
AGAGATGGATGCACCAGTTCACAAGCGTCATCGCGTTGCATTCTCGAATG
TAATCGAGGAGCTTGAGTTAGTTAGCCAGGCTGTGCGTGGAAACTCCACT
GCTAATCTACACAGTAGCAGTACTACCACTACTACTGACCCTGCAGCGCA
TGAACACATCTCCTTATTTAATCTCTTCCAACGCGATGAACCCCAAGCTA
TCGGACGTCTCCCTCCACTGCGAGCACTTGTGCAGCAAGCCAGAGAGCGG
GGATGTCTAGTTGCGAAGACTACAGAGGAAGAAAACTTACTCTCTGCCTC
TACTACTACTGCTGCTCCTTCATCTACTGCTAATACTGACACTACTACCA
CTACTACTAGTAGTGGTGGGTTGAATGGACTGGAGTTTGATGACCACGAT
TTTGACTTCGCGCAGTTCATGGGAGATGACTTCCAGATGGAGGATAATGC
GGACTGCCCGGTCATTTCTCTCTCTCATCCTATTGATAATAGTAGTAGAA
ATAGTAGTTGTGATGGTGGCAGTAGTGGTAGTATTACTTCCACACAGTCA
TACCATCACTCTATGGCTCCTGTACCTGCTCCACAATCTCCTACTTCTTC
CAATAGTTGTATGACTACTATTTCTAGTGGAGCTTCAAATAATTTATTCG
GTAGTGGACCGAGTATTCTCGATGCCAATGGGGGAATTAATGCGAATAGT
GGGAATCTACTCACGGTTAATATGATGCCTTCATCGAAAACTCCTGGATC
TAATAGTAATACCCCTCAAACTATTCAACGCAAGCGTGGTCGACCTCGAA
AACACTCGATTTCACACTCGGCTGCTCCAGCAAGCACTCCTTCTGCTTCT
ACTGCCAAATCTCTACTACCTGCACTAACACAAAGTGTGAGTTATACACA
ATTATCATATATTGATAGTCATATACATTATCAACAACAGCAGCAATATG
CAGTACCAGTCAATGCTGCTGTAGCACAAGCATATAACTATGCTGTCTCT
ACAGCACTTAATAGTAGTAACAACCACAATAGCAATACTAATACTACTTC
TGCCACTAATTCACCACGTCCATTCACAACGCAACGCTCCTATAGTGCTG
ATTTTGCTAGTAACAACCCTACTACTAGTAATGCCCCAGAATTCTCGTAT
TCTCCCGGTAATTACTACGGCTATGGCTCGGATATTCGCTGCGGAATGTC
CCGGACCATGAGCTCCGAGTCGGACACGATGATGGCGGCGGTTTTTGACC
CTAAGATATACGACTCGGCTGAGTTTGACAATACTATGGGTATGCTAGAG
GACTTCGAATAG
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