mRNA_D-dudresnayi_contig982.28624.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous
Overview
Homology
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: UPI0016737ABC (translation initiation factor IF-2 n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016737ABC) HSP 1 Score: 256 bits (653), Expect = 1.180e-75 Identity = 134/250 (53.60%), Postives = 184/250 (73.60%), Query Frame = 1 Query: 70 DENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPS 819 D+ A LLPR+PVV VMGHVDHGKT+LLD +RN +VA EAGGITQ + A+ +++ G + F+DTPGH AF+ MR+ GA TD+VILVVA DDG+ QT+EA++ AK A+ VIV NK+DK +A RV +LL+HD++VEE GGDVQV +V+ +T +GID L+E+++LQAEVLEL+A+ AE +V++A VERGRG VA VLV+ G++ VGD V G +G+V+++V+DRG V +A P+ Sbjct: 345 DDTADLLPRSPVVTVMGHVDHGKTSLLDAIRNA--DVAAGEAGGITQHIGAYQIQIPSGDKITFIDTPGHEAFTEMRARGANVTDIVILVVAADDGIMAQTVEAIRHAKAANVPVIVACNKIDK-----PDADPARVRQELLQHDIVVEEMGGDVQVVDVSAKTKQGIDTLLEAIMLQAEVLELKANPNRSAEGVVIEAKVERGRGSVATVLVQRGTVKVGDVFVAGAEWGRVRALVDDRGAQVDSAGPT 587
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A3D2W2B2_9PROT (Translation initiation factor IF-2 (Fragment) n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A3D2W2B2_9PROT) HSP 1 Score: 247 bits (631), Expect = 3.890e-75 Identity = 134/257 (52.14%), Postives = 184/257 (71.60%), Query Frame = 1 Query: 58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 + +TDEN LLPR PVV VMGHVDHGKT+LLD LR +VA EAGGITQ + A+ V + G+ V FLDTPGHAAFS+MR+ GA TD+V+LVVA DDGV PQTIEA++ A+ + +IV +NK+DK +A RVLT LL+H+++ E GGD EV+ G+D L+E++LLQAE+L+L+A+ AEA V+++ ++RGRG VA VLV+ G+L GD VV GG +G+++++ N+RG+ ++TA PS V Sbjct: 23 IEDTDEN--LLPRPPVVTVMGHVDHGKTSLLDALRQT--DVAAGEAGGITQHIGAYQVRLKEGQRVTFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMPQTIEAVQHARASGAPIIVAINKIDK-----PDANPTRVLTDLLQHEIVTETHGGDTLSVEVSALKRTGLDKLVETILLQAELLDLKANPDRPAEAAVIESKLDRGRGTVATVLVQKGTLKRGDIVVAGGQWGRIRAITNERGQVLQTAGPSEPV 270
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A5B9DT36_9HYPH (Translation initiation factor IF-2 n=2 Tax=Devosiaceae TaxID=2831106 RepID=A0A5B9DT36_9HYPH) HSP 1 Score: 254 bits (649), Expect = 7.800e-75 Identity = 135/253 (53.36%), Postives = 185/253 (73.12%), Query Frame = 1 Query: 70 DENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 D+ + PR PVV +MGHVDHGKT+LLD +R V EAGGITQ + A+ VE G+ + FLDTPGH AF++MR+ GA ATD+ ILVVA DDGV PQTIE++K AK A +IV +NK+DK EA NRV T+LL+H++ VE GG+V EV+ +T +G+D L+E++LLQAEVLEL+A++ G+AE +V++A ++RGRG VA VLV+ G+L VGD VV G + +V++++ND+GE V++ALPS V Sbjct: 399 DKAEDMTPRPPVVTIMGHVDHGKTSLLDAIREA--NVVSGEAGGITQHIGAYQVEKN-GQKITFLDTPGHEAFTAMRARGAQATDIAILVVAADDGVMPQTIESIKHAKAAGVPIIVAINKIDK-----HEADPNRVRTELLQHEVFVESMGGEVLDVEVSAKTHQGLDKLLETILLQAEVLELKANVDGRAEGLVIEAKLDRGRGAVATVLVQRGTLHVGDIVVAGTEWARVRALINDKGEQVKSALPSSPV 643
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A7X4EMM9_9PROT (Translation initiation factor IF-2 n=4 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7X4EMM9_9PROT) HSP 1 Score: 254 bits (648), Expect = 1.140e-74 Identity = 138/253 (54.55%), Postives = 182/253 (71.94%), Query Frame = 1 Query: 70 DENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 D+ L PRAPVV VMGHVDHGKT+LLD LR +VAG EAGGITQ + A+ V + G + FLDTPGHAAF+ MRS GA TD+VILVVA DDGV+PQT+EA+ AK A+ +IV +NK+D R A NRV+T+LL+HD+ VE GGDV EV+ +D L E++LLQAE+++L A+ +A+ +V++A +ERGRG VA VLV+ G+L+VGD VVG +G+V+++V+DRGE V+TA PS V Sbjct: 403 DDEETLKPRAPVVTVMGHVDHGKTSLLDALRET--DVAGREAGGITQHIGAYRVTLAAGGQITFLDTPGHAAFTEMRSRGATVTDIVILVVAADDGVQPQTVEAIAHAKAAEVPIIVAVNKIDA-----RGADANRVMTELLQHDIQVEPMGGDVLCIEVSATEKTNLDKLEEAILLQAELMDLAANPDREAQGVVVEAKLERGRGAVATVLVQRGTLAVGDIFVVGREWGRVRALVDDRGETVQTAGPSTPV 648
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A2Z4UNP1_9HYPH (Translation initiation factor IF-2 n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UNP1_9HYPH) HSP 1 Score: 252 bits (643), Expect = 3.350e-74 Identity = 133/257 (51.75%), Postives = 184/257 (71.60%), Query Frame = 1 Query: 58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 V + D + V PRAPVV VMGHVDHGKT+LLD LR +V EAGGITQ + A+ V + G + FLDTPGH AF+SMR+ GA ATD+VILVVA DDGV PQTIEA+ AK A+ +IV +NK DK P +E + +N +LL+H++ VE+ GGD+Q EV+ T EG+D L E+++LQAE+LEL+A+ E ++++A +++GRG V +LV+ G+L+VGD +V G +GKV++++NDRGE+V +A PS V Sbjct: 352 VTDDDTDEVKQPRAPVVTVMGHVDHGKTSLLDALRQT--DVVAGEAGGITQHIGAYQVNIASGDKITFLDTPGHEAFTSMRARGAQATDIVILVVAADDGVMPQTIEAINHAKAAEVPIIVAINKCDK-PAAEPQRVKN----ELLQHEIFVEDMGGDIQAVEVSAHTKEGLDKLEEAIVLQAEILELKANAARPGEGVIVEAKLDKGRGPVGTLLVQRGTLAVGDILVAGAEWGKVRALINDRGESVESAGPSQPV 601
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A2N3BYC4_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3BYC4_9PROT) HSP 1 Score: 252 bits (643), Expect = 4.790e-74 Identity = 135/257 (52.53%), Postives = 185/257 (71.98%), Query Frame = 1 Query: 58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 V D + LPRAPVV VMGHVDHGKT+LLD LR +VA EAGGITQ + A+ V ++ G ++ FLDTPGHAAF+SMR+ GA ATD+V+LVVA DDGV PQTIEA+ AK A +IV +NK+DK +A RV +LL+H+++VE+FGGDV ++ +TG G+D L E++LLQAE+L+++A+ AE IV++A ++RGRG V VLV+ G+L VGD +V G +G+V++++ND GE V++A PS V Sbjct: 379 VGEADTDEAKLPRAPVVTVMGHVDHGKTSLLDALRKT--DVAAGEAGGITQHIGAYQVNLSSGESITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAISHAKAAGVPMIVAINKMDK-----PDADPTRVKNELLQHEVVVEDFGGDVLAVPISAKTGLGLDKLEETILLQAELLDIRANPDRLAEGIVVEAKLDRGRGPVGTVLVQRGTLHVGDIIVAGAEWGRVRALINDHGENVQSAGPSQPV 628
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A4Q3T331_9BURK (Translation initiation factor IF-2 (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A4Q3T331_9BURK) HSP 1 Score: 239 bits (609), Expect = 5.050e-74 Identity = 128/244 (52.46%), Postives = 178/244 (72.95%), Query Frame = 1 Query: 88 LPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPS 819 LPRAPVV VMGHVDHGKT+LLD +R +VA EAGGITQ + A+ V+ G + FLDTPGH AF++MR+ GA ATD+VILVVA DDGV PQT EA+K AK A ++V +NK+DK +A +RV +L+ +++ EEFGG+ V+ +TGEGIDAL+E +LLQAEVLEL+A + A+ +V++A +++GRG VA VLV+ G+L GD V+ G +YG+V++M+++ G+ ++TA PS Sbjct: 13 LPRAPVVTVMGHVDHGKTSLLDYIRRA--KVASGEAGGITQHIGAYHVQTERGM-ISFLDTPGHEAFTAMRARGAQATDIVILVVAADDGVMPQTKEAIKHAKAAGVPIVVAINKIDK-----PDANADRVKNELVAEEVVPEEFGGESPFVPVSAKTGEGIDALLEQVLLQAEVLELKAPVDAMAKGLVIEAQLDKGRGPVATVLVQSGTLKAGDVVLAGQTYGRVRAMLDENGKPIKTAGPS 248
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A2N3EAP3_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EAP3_9PROT) HSP 1 Score: 251 bits (642), Expect = 5.120e-74 Identity = 136/257 (52.92%), Postives = 181/257 (70.43%), Query Frame = 1 Query: 58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 V D PRAPVV VMGHVDHGKT+LLD LR +VA EAGGITQ + A+ V ++ G + FLDTPGHAAF+SMR+ GA TD+V+LVVA DDGV PQTIEA+ AK A VIV +NK+DK EA RV +LL+HD++VE+FGGDV ++ +TG G+D L E++LLQAE+L+++A+ AE I+++A ++RGRG V VLV+ G+L VGD +V G +G+V++++NDRGE V +A PS V Sbjct: 359 VGEDDTTEAKKPRAPVVTVMGHVDHGKTSLLDALRKT--DVAAGEAGGITQHIGAYQVNLSSGARITFLDTPGHAAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPVIVAINKMDK-----PEADPARVKNELLQHDIVVEDFGGDVLAVPISAKTGMGLDKLEETILLQAELLDIRANPDRAAEGIIVEAKLDRGRGPVGTVLVQRGTLRVGDIIVAGAEWGRVRALINDRGENVMSAGPSEPV 608
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A0K9PKE1_ZOSMR (Translation initiation factor IF-2 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PKE1_ZOSMR) HSP 1 Score: 248 bits (634), Expect = 5.870e-74 Identity = 131/255 (51.37%), Postives = 185/255 (72.55%), Query Frame = 1 Query: 64 NTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 ++DE A+LLPR+PVV VMGHVDHGKT+LLD LR +A EAGGITQ L AF V ++ G ++ FLDTPGHAAFS+MR+ GA TD+V+LVVA DDGV PQT+EA+ AK+A+ ++V +NK DK +A +V QL+ L++EEFGGD+QV EV+ G G+D L E+LLLQ+E+++L+A I G A+A V++A V+RGRG +A +++ G+LS G+ +VVG +GK++++ + G+ + TA PS V Sbjct: 179 HSDEGAILLPRSPVVTVMGHVDHGKTSLLDALRQT--SIAAKEAGGITQHLGAFVVSMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAISHAKKANVPIVVAINKCDK-----PDADPQKVKNQLVSEGLMLEEFGGDIQVIEVSATKGIGLDLLEEALLLQSELMDLKAQIDGPAQAFVVEARVDRGRGPLATAIMKSGTLSSGNRIVVGAEWGKIRAIRDMMGKVIETAGPSMPV 426
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: G1XWR1_9PROT (Translation initiation factor IF-2 n=1 Tax=Nitrospirillum amazonense Y2 TaxID=1003237 RepID=G1XWR1_9PROT) HSP 1 Score: 246 bits (629), Expect = 6.250e-74 Identity = 133/255 (52.16%), Postives = 184/255 (72.16%), Query Frame = 1 Query: 64 NTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828 + D + L PR PVV VMGHVDHGKT+LLD LR+ +VA EAGGITQ + A+ V++ G + F+DTPGHAAF+ MR+ GA TD+V+LVVA DDGV PQT+EA++ AK A+ +I+ +NK D +P A +RV +LL+H L+VE GGDV EV+ +TG+G+D L E++LLQAE+LEL+A+ AE +V++A +ERGRG VA +LV+ G+L VGD VV G +G+V+++VNDRG+ V +A P+ V Sbjct: 117 DVDRDEDLSPRPPVVTVMGHVDHGKTSLLDALRHT--DVASREAGGITQHIGAYQVQLASGSRITFIDTPGHAAFTEMRARGANVTDVVVLVVAADDGVMPQTVEAIQHAKAAEVPIIIAINKCD-LP----GAKPDRVRQELLQHGLVVEAMGGDVLDVEVSAKTGKGLDKLEENILLQAEILELKANPARTAEGVVVEAKLERGRGSVATMLVQRGTLKVGDIVVAGSEWGRVRALVNDRGQNVESAGPATPV 364 The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig982.28624.1 >prot_D-dudresnayi_contig982.28624.1 ID=prot_D-dudresnayi_contig982.28624.1|Name=mRNA_D-dudresnayi_contig982.28624.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=276bp RIEDKTAVRTASITNKPSNVHNTDENAVLLPRAPVVCVMGHVDHGKTTLLback to top mRNA from alignment at D-dudresnayi_contig982:3138..4118- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dudresnayi_contig982.28624.1 ID=mRNA_D-dudresnayi_contig982.28624.1|Name=mRNA_D-dudresnayi_contig982.28624.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=981bp|location=Sequence derived from alignment at D-dudresnayi_contig982:3138..4118- (Desmarestia dudresnayi DdudBR16 monoicous)back to top Coding sequence (CDS) from alignment at D-dudresnayi_contig982:3138..4118- >mRNA_D-dudresnayi_contig982.28624.1 ID=mRNA_D-dudresnayi_contig982.28624.1|Name=mRNA_D-dudresnayi_contig982.28624.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at D-dudresnayi_contig982:3138..4118- (Desmarestia dudresnayi DdudBR16 monoicous)back to top |