mRNA_D-dudresnayi_contig982.28624.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig982.28624.1
Unique NamemRNA_D-dudresnayi_contig982.28624.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: UPI0016737ABC (translation initiation factor IF-2 n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016737ABC)

HSP 1 Score: 256 bits (653), Expect = 1.180e-75
Identity = 134/250 (53.60%), Postives = 184/250 (73.60%), Query Frame = 1
Query:   70 DENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPS 819
            D+ A LLPR+PVV VMGHVDHGKT+LLD +RN   +VA  EAGGITQ + A+ +++  G  + F+DTPGH AF+ MR+ GA  TD+VILVVA DDG+  QT+EA++ AK A+  VIV  NK+DK      +A   RV  +LL+HD++VEE GGDVQV +V+ +T +GID L+E+++LQAEVLEL+A+    AE +V++A VERGRG VA VLV+ G++ VGD  V G  +G+V+++V+DRG  V +A P+
Sbjct:  345 DDTADLLPRSPVVTVMGHVDHGKTSLLDAIRNA--DVAAGEAGGITQHIGAYQIQIPSGDKITFIDTPGHEAFTEMRARGANVTDIVILVVAADDGIMAQTVEAIRHAKAANVPVIVACNKIDK-----PDADPARVRQELLQHDIVVEEMGGDVQVVDVSAKTKQGIDTLLEAIMLQAEVLELKANPNRSAEGVVIEAKVERGRGSVATVLVQRGTVKVGDVFVAGAEWGRVRALVDDRGAQVDSAGPT 587          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A3D2W2B2_9PROT (Translation initiation factor IF-2 (Fragment) n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A3D2W2B2_9PROT)

HSP 1 Score: 247 bits (631), Expect = 3.890e-75
Identity = 134/257 (52.14%), Postives = 184/257 (71.60%), Query Frame = 1
Query:   58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            + +TDEN  LLPR PVV VMGHVDHGKT+LLD LR    +VA  EAGGITQ + A+ V +  G+ V FLDTPGHAAFS+MR+ GA  TD+V+LVVA DDGV PQTIEA++ A+ +   +IV +NK+DK      +A   RVLT LL+H+++ E  GGD    EV+     G+D L+E++LLQAE+L+L+A+    AEA V+++ ++RGRG VA VLV+ G+L  GD VV GG +G+++++ N+RG+ ++TA PS  V
Sbjct:   23 IEDTDEN--LLPRPPVVTVMGHVDHGKTSLLDALRQT--DVAAGEAGGITQHIGAYQVRLKEGQRVTFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMPQTIEAVQHARASGAPIIVAINKIDK-----PDANPTRVLTDLLQHEIVTETHGGDTLSVEVSALKRTGLDKLVETILLQAELLDLKANPDRPAEAAVIESKLDRGRGTVATVLVQKGTLKRGDIVVAGGQWGRIRAITNERGQVLQTAGPSEPV 270          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A5B9DT36_9HYPH (Translation initiation factor IF-2 n=2 Tax=Devosiaceae TaxID=2831106 RepID=A0A5B9DT36_9HYPH)

HSP 1 Score: 254 bits (649), Expect = 7.800e-75
Identity = 135/253 (53.36%), Postives = 185/253 (73.12%), Query Frame = 1
Query:   70 DENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            D+   + PR PVV +MGHVDHGKT+LLD +R     V   EAGGITQ + A+ VE   G+ + FLDTPGH AF++MR+ GA ATD+ ILVVA DDGV PQTIE++K AK A   +IV +NK+DK      EA  NRV T+LL+H++ VE  GG+V   EV+ +T +G+D L+E++LLQAEVLEL+A++ G+AE +V++A ++RGRG VA VLV+ G+L VGD VV G  + +V++++ND+GE V++ALPS  V
Sbjct:  399 DKAEDMTPRPPVVTIMGHVDHGKTSLLDAIREA--NVVSGEAGGITQHIGAYQVEKN-GQKITFLDTPGHEAFTAMRARGAQATDIAILVVAADDGVMPQTIESIKHAKAAGVPIIVAINKIDK-----HEADPNRVRTELLQHEVFVESMGGEVLDVEVSAKTHQGLDKLLETILLQAEVLELKANVDGRAEGLVIEAKLDRGRGAVATVLVQRGTLHVGDIVVAGTEWARVRALINDKGEQVKSALPSSPV 643          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A7X4EMM9_9PROT (Translation initiation factor IF-2 n=4 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7X4EMM9_9PROT)

HSP 1 Score: 254 bits (648), Expect = 1.140e-74
Identity = 138/253 (54.55%), Postives = 182/253 (71.94%), Query Frame = 1
Query:   70 DENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            D+   L PRAPVV VMGHVDHGKT+LLD LR    +VAG EAGGITQ + A+ V +  G  + FLDTPGHAAF+ MRS GA  TD+VILVVA DDGV+PQT+EA+  AK A+  +IV +NK+D      R A  NRV+T+LL+HD+ VE  GGDV   EV+      +D L E++LLQAE+++L A+   +A+ +V++A +ERGRG VA VLV+ G+L+VGD  VVG  +G+V+++V+DRGE V+TA PS  V
Sbjct:  403 DDEETLKPRAPVVTVMGHVDHGKTSLLDALRET--DVAGREAGGITQHIGAYRVTLAAGGQITFLDTPGHAAFTEMRSRGATVTDIVILVVAADDGVQPQTVEAIAHAKAAEVPIIVAVNKIDA-----RGADANRVMTELLQHDIQVEPMGGDVLCIEVSATEKTNLDKLEEAILLQAELMDLAANPDREAQGVVVEAKLERGRGAVATVLVQRGTLAVGDIFVVGREWGRVRALVDDRGETVQTAGPSTPV 648          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A2Z4UNP1_9HYPH (Translation initiation factor IF-2 n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UNP1_9HYPH)

HSP 1 Score: 252 bits (643), Expect = 3.350e-74
Identity = 133/257 (51.75%), Postives = 184/257 (71.60%), Query Frame = 1
Query:   58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            V + D + V  PRAPVV VMGHVDHGKT+LLD LR    +V   EAGGITQ + A+ V +  G  + FLDTPGH AF+SMR+ GA ATD+VILVVA DDGV PQTIEA+  AK A+  +IV +NK DK P +E +  +N    +LL+H++ VE+ GGD+Q  EV+  T EG+D L E+++LQAE+LEL+A+     E ++++A +++GRG V  +LV+ G+L+VGD +V G  +GKV++++NDRGE+V +A PS  V
Sbjct:  352 VTDDDTDEVKQPRAPVVTVMGHVDHGKTSLLDALRQT--DVVAGEAGGITQHIGAYQVNIASGDKITFLDTPGHEAFTSMRARGAQATDIVILVVAADDGVMPQTIEAINHAKAAEVPIIVAINKCDK-PAAEPQRVKN----ELLQHEIFVEDMGGDIQAVEVSAHTKEGLDKLEEAIVLQAEILELKANAARPGEGVIVEAKLDKGRGPVGTLLVQRGTLAVGDILVAGAEWGKVRALINDRGESVESAGPSQPV 601          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A2N3BYC4_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3BYC4_9PROT)

HSP 1 Score: 252 bits (643), Expect = 4.790e-74
Identity = 135/257 (52.53%), Postives = 185/257 (71.98%), Query Frame = 1
Query:   58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            V   D +   LPRAPVV VMGHVDHGKT+LLD LR    +VA  EAGGITQ + A+ V ++ G ++ FLDTPGHAAF+SMR+ GA ATD+V+LVVA DDGV PQTIEA+  AK A   +IV +NK+DK      +A   RV  +LL+H+++VE+FGGDV    ++ +TG G+D L E++LLQAE+L+++A+    AE IV++A ++RGRG V  VLV+ G+L VGD +V G  +G+V++++ND GE V++A PS  V
Sbjct:  379 VGEADTDEAKLPRAPVVTVMGHVDHGKTSLLDALRKT--DVAAGEAGGITQHIGAYQVNLSSGESITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAISHAKAAGVPMIVAINKMDK-----PDADPTRVKNELLQHEVVVEDFGGDVLAVPISAKTGLGLDKLEETILLQAELLDIRANPDRLAEGIVVEAKLDRGRGPVGTVLVQRGTLHVGDIIVAGAEWGRVRALINDHGENVQSAGPSQPV 628          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A4Q3T331_9BURK (Translation initiation factor IF-2 (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A4Q3T331_9BURK)

HSP 1 Score: 239 bits (609), Expect = 5.050e-74
Identity = 128/244 (52.46%), Postives = 178/244 (72.95%), Query Frame = 1
Query:   88 LPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPS 819
            LPRAPVV VMGHVDHGKT+LLD +R    +VA  EAGGITQ + A+ V+   G  + FLDTPGH AF++MR+ GA ATD+VILVVA DDGV PQT EA+K AK A   ++V +NK+DK      +A  +RV  +L+  +++ EEFGG+     V+ +TGEGIDAL+E +LLQAEVLEL+A +   A+ +V++A +++GRG VA VLV+ G+L  GD V+ G +YG+V++M+++ G+ ++TA PS
Sbjct:   13 LPRAPVVTVMGHVDHGKTSLLDYIRRA--KVASGEAGGITQHIGAYHVQTERGM-ISFLDTPGHEAFTAMRARGAQATDIVILVVAADDGVMPQTKEAIKHAKAAGVPIVVAINKIDK-----PDANADRVKNELVAEEVVPEEFGGESPFVPVSAKTGEGIDALLEQVLLQAEVLELKAPVDAMAKGLVIEAQLDKGRGPVATVLVQSGTLKAGDVVLAGQTYGRVRAMLDENGKPIKTAGPS 248          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A2N3EAP3_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EAP3_9PROT)

HSP 1 Score: 251 bits (642), Expect = 5.120e-74
Identity = 136/257 (52.92%), Postives = 181/257 (70.43%), Query Frame = 1
Query:   58 VHNTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            V   D      PRAPVV VMGHVDHGKT+LLD LR    +VA  EAGGITQ + A+ V ++ G  + FLDTPGHAAF+SMR+ GA  TD+V+LVVA DDGV PQTIEA+  AK A   VIV +NK+DK      EA   RV  +LL+HD++VE+FGGDV    ++ +TG G+D L E++LLQAE+L+++A+    AE I+++A ++RGRG V  VLV+ G+L VGD +V G  +G+V++++NDRGE V +A PS  V
Sbjct:  359 VGEDDTTEAKKPRAPVVTVMGHVDHGKTSLLDALRKT--DVAAGEAGGITQHIGAYQVNLSSGARITFLDTPGHAAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPVIVAINKMDK-----PEADPARVKNELLQHDIVVEDFGGDVLAVPISAKTGMGLDKLEETILLQAELLDIRANPDRAAEGIIVEAKLDRGRGPVGTVLVQRGTLRVGDIIVAGAEWGRVRALINDRGENVMSAGPSEPV 608          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: A0A0K9PKE1_ZOSMR (Translation initiation factor IF-2 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PKE1_ZOSMR)

HSP 1 Score: 248 bits (634), Expect = 5.870e-74
Identity = 131/255 (51.37%), Postives = 185/255 (72.55%), Query Frame = 1
Query:   64 NTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            ++DE A+LLPR+PVV VMGHVDHGKT+LLD LR     +A  EAGGITQ L AF V ++ G ++ FLDTPGHAAFS+MR+ GA  TD+V+LVVA DDGV PQT+EA+  AK+A+  ++V +NK DK      +A   +V  QL+   L++EEFGGD+QV EV+   G G+D L E+LLLQ+E+++L+A I G A+A V++A V+RGRG +A  +++ G+LS G+ +VVG  +GK++++ +  G+ + TA PS  V
Sbjct:  179 HSDEGAILLPRSPVVTVMGHVDHGKTSLLDALRQT--SIAAKEAGGITQHLGAFVVSMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAISHAKKANVPIVVAINKCDK-----PDADPQKVKNQLVSEGLMLEEFGGDIQVIEVSATKGIGLDLLEEALLLQSELMDLKAQIDGPAQAFVVEARVDRGRGPLATAIMKSGTLSSGNRIVVGAEWGKIRAIRDMMGKVIETAGPSMPV 426          
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Match: G1XWR1_9PROT (Translation initiation factor IF-2 n=1 Tax=Nitrospirillum amazonense Y2 TaxID=1003237 RepID=G1XWR1_9PROT)

HSP 1 Score: 246 bits (629), Expect = 6.250e-74
Identity = 133/255 (52.16%), Postives = 184/255 (72.16%), Query Frame = 1
Query:   64 NTDENAVLLPRAPVVCVMGHVDHGKTTLLDTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMRSHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPFSEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLLQAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVGGSYGKVKSMVNDRGEAVRTALPSHSV 828
            + D +  L PR PVV VMGHVDHGKT+LLD LR+   +VA  EAGGITQ + A+ V++  G  + F+DTPGHAAF+ MR+ GA  TD+V+LVVA DDGV PQT+EA++ AK A+  +I+ +NK D +P     A  +RV  +LL+H L+VE  GGDV   EV+ +TG+G+D L E++LLQAE+LEL+A+    AE +V++A +ERGRG VA +LV+ G+L VGD VV G  +G+V+++VNDRG+ V +A P+  V
Sbjct:  117 DVDRDEDLSPRPPVVTVMGHVDHGKTSLLDALRHT--DVASREAGGITQHIGAYQVQLASGSRITFIDTPGHAAFTEMRARGANVTDVVVLVVAADDGVMPQTVEAIQHAKAAEVPIIIAINKCD-LP----GAKPDRVRQELLQHGLVVEAMGGDVLDVEVSAKTGKGLDKLEENILLQAEILELKANPARTAEGVVVEAKLERGRGSVATMLVQRGTLKVGDIVVAGSEWGRVRALVNDRGQNVESAGPATPV 364          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig982.28624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0016737ABC1.180e-7553.60translation initiation factor IF-2 n=1 Tax=Thalass... [more]
A0A3D2W2B2_9PROT3.890e-7552.14Translation initiation factor IF-2 (Fragment) n=1 ... [more]
A0A5B9DT36_9HYPH7.800e-7553.36Translation initiation factor IF-2 n=2 Tax=Devosia... [more]
A0A7X4EMM9_9PROT1.140e-7454.55Translation initiation factor IF-2 n=4 Tax=Rhodosp... [more]
A0A2Z4UNP1_9HYPH3.350e-7451.75Translation initiation factor IF-2 n=2 Tax=Hyphomi... [more]
A0A2N3BYC4_9PROT4.790e-7452.53Translation initiation factor IF-2 n=1 Tax=Alphapr... [more]
A0A4Q3T331_9BURK5.050e-7452.46Translation initiation factor IF-2 (Fragment) n=1 ... [more]
A0A2N3EAP3_9PROT5.120e-7452.92Translation initiation factor IF-2 n=1 Tax=Alphapr... [more]
A0A0K9PKE1_ZOSMR5.870e-7451.37Translation initiation factor IF-2 n=1 Tax=Zostera... [more]
G1XWR1_9PROT6.250e-7452.16Translation initiation factor IF-2 n=1 Tax=Nitrosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig982contigD-dudresnayi_contig982:3138..4118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score255.0
Seed ortholog evalue4e-65
Seed eggNOG ortholog1535287.JP74_05860
Preferred nameinfB
KEGG koko:K02519
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0036094,GO:0043021,GO:0043024,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0097159,GO:0097216,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
EggNOG OGs1MV26@1224,2TQMY@28211,3N6B5@45401,COG0532@1,COG0532@2
COG Functional cat.J
Best tax levelHyphomicrobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Exons3
Model size828
Cds size828
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig982.28624.1prot_D-dudresnayi_contig982.28624.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig982 3138..4118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.4299328-CDS-D-dudresnayi_contig982:3137..38011622930939.4299328-CDS-D-dudresnayi_contig982:3137..3801Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 3138..3801 -
1690557973.0097837-CDS-D-dudresnayi_contig982:3137..38011690557973.0097837-CDS-D-dudresnayi_contig982:3137..3801Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 3138..3801 -
1622930939.4481976-CDS-D-dudresnayi_contig982:3858..39171622930939.4481976-CDS-D-dudresnayi_contig982:3858..3917Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 3859..3917 -
1690557973.0231602-CDS-D-dudresnayi_contig982:3858..39171690557973.0231602-CDS-D-dudresnayi_contig982:3858..3917Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 3859..3917 -
1622930939.467408-CDS-D-dudresnayi_contig982:4013..41181622930939.467408-CDS-D-dudresnayi_contig982:4013..4118Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 4014..4118 -
1690557973.033777-CDS-D-dudresnayi_contig982:4013..41181690557973.033777-CDS-D-dudresnayi_contig982:4013..4118Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig982 4014..4118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig982.28624.1

>prot_D-dudresnayi_contig982.28624.1 ID=prot_D-dudresnayi_contig982.28624.1|Name=mRNA_D-dudresnayi_contig982.28624.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=276bp
RIEDKTAVRTASITNKPSNVHNTDENAVLLPRAPVVCVMGHVDHGKTTLL
DTLRNGPGEVAGTEAGGITQKLSAFGVEVTPGRNVMFLDTPGHAAFSSMR
SHGAIATDLVILVVAIDDGVRPQTIEALKMAKEADCSVIVVLNKVDKIPF
SEREAARNRVLTQLLKHDLIVEEFGGDVQVAEVAGRTGEGIDALMESLLL
QAEVLELQASITGQAEAIVLDASVERGRGVVAEVLVRWGSLSVGDAVVVG
GSYGKVKSMVNDRGEAVRTALPSHSV
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mRNA from alignment at D-dudresnayi_contig982:3138..4118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig982.28624.1 ID=mRNA_D-dudresnayi_contig982.28624.1|Name=mRNA_D-dudresnayi_contig982.28624.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=981bp|location=Sequence derived from alignment at D-dudresnayi_contig982:3138..4118- (Desmarestia dudresnayi DdudBR16 monoicous)
AGAATTGAAGATAAAACTGCTGTTAGAACTGCTAGTATCACTAATAAACC AAGTAATGTACATAATACTGATGAGAATGCTGTGTTATTACCTAGAGCTC CTGTGGTAAGTATTTTATTTCTGTATTACCGATATATGCGTTGCGTTTGT ATAGTGTGATTTATATGAGTAATATGTCTATTTCTGTGTACATTTTGTTA GGTATGTGTGATGGGACATGTCGATCATGGTAAAACCACTCTATTAGATA CATTAAGGAAGTATAACCAAAAGAGCAGTAGCACTAGTAGCAGTGGTAGT AAAGAAAAGAACACCAGCGGGCCAGGTGAAGTGGCGGGCACAGAGGCTGG TGGCATCACTCAGAAACTCAGTGCCTTCGGTGTAGAAGTCACTCCAGGCC GAAATGTGATGTTTTTAGACACACCTGGCCATGCAGCATTCTCTAGTATG CGCAGTCACGGAGCGATCGCCACTGATCTGGTTATCCTGGTGGTGGCTAT CGATGATGGAGTGCGCCCTCAGACCATCGAGGCGCTGAAGATGGCCAAGG AAGCGGATTGTTCGGTTATAGTGGTGCTGAATAAAGTAGATAAGATACCC TTCTCTGAGCGAGAAGCTGCACGCAATCGAGTACTGACTCAGCTGTTGAA GCACGATCTGATCGTGGAGGAGTTCGGAGGAGATGTGCAGGTGGCAGAGG TGGCAGGGCGCACTGGTGAGGGGATTGACGCGCTCATGGAGAGCTTGCTC TTACAAGCCGAAGTGCTGGAGTTGCAAGCCTCCATTACAGGCCAAGCGGA AGCGATTGTATTAGATGCCAGTGTAGAGCGAGGTAGAGGTGTGGTGGCTG AGGTGTTAGTGAGATGGGGGTCCTTGAGTGTGGGGGACGCTGTGGTGGTG GGTGGCAGCTATGGTAAGGTTAAGTCTATGGTAAATGACCGCGGTGAGGC TGTGCGCACAGCCCTGCCATCACACTCGGTA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig982:3138..4118-

>mRNA_D-dudresnayi_contig982.28624.1 ID=mRNA_D-dudresnayi_contig982.28624.1|Name=mRNA_D-dudresnayi_contig982.28624.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at D-dudresnayi_contig982:3138..4118- (Desmarestia dudresnayi DdudBR16 monoicous)
AGAATTGAAGATAAAACTGCTGTTAGAACTGCTAGTATCACTAATAAACC
AAGTAATGTACATAATACTGATGAGAATGCTGTGTTATTACCTAGAGCTC
CTGTGAGAATTGAAGATAAAACTGCTGTTAGAACTGCTAGTATCACTAAT
AAACCAAGTAATGTACATAATACTGATGAGAATGCTGTGTTATTACCTAG
AGCTCCTGTGGTATGTGTGATGGGACATGTCGATCATGGTAAAACCACTC
TATTAGATACATTAAGGAAGTATGTGTGATGGGACATGTCGATCATGGTA
AAACCACTCTATTAGATACATTAAGGAACGGGCCAGGTGAAGTGGCGGGC
ACAGAGGCTGGTGGCATCACTCAGAAACTCAGTGCCTTCGGTGTAGAAGT
CACTCCAGGCCGAAATGTGATGTTTTTAGACACACCTGGCCATGCAGCAT
TCTCTAGTATGCGCAGTCACGGAGCGATCGCCACTGATCTGGTTATCCTG
GTGGTGGCTATCGATGATGGAGTGCGCCCTCAGACCATCGAGGCGCTGAA
GATGGCCAAGGAAGCGGATTGTTCGGTTATAGTGGTGCTGAATAAAGTAG
ATAAGATACCCTTCTCTGAGCGAGAAGCTGCACGCAATCGAGTACTGACT
CAGCTGTTGAAGCACGATCTGATCGTGGAGGAGTTCGGAGGAGATGTGCA
GGTGGCAGAGGTGGCAGGGCGCACTGGTGAGGGGATTGACGCGCTCATGG
AGAGCTTGCTCTTACAAGCCGAAGTGCTGGAGTTGCAAGCCTCCATTACA
GGCCAAGCGGAAGCGATTGTATTAGATGCCAGTGTAGAGCGAGGTAGAGG
TGTGGTGGCTGAGGTGTTAGTGAGATGGGGGTCCTTGAGTGTGGGGGACG
CTGTGGTGGTGGGTGGCAGCTATGGTAAGGTTAAGTCTATGGTAAATGAC
CGCGGTGAGGCTGTGCGCACAGCCCTGCCATCACACTCGGTACGGGCCAG
GTGAAGTGGCGGGCACAGAGGCTGGTGGCATCACTCAGAAACTCAGTGCC
TTCGGTGTAGAAGTCACTCCAGGCCGAAATGTGATGTTTTTAGACACACC
TGGCCATGCAGCATTCTCTAGTATGCGCAGTCACGGAGCGATCGCCACTG
ATCTGGTTATCCTGGTGGTGGCTATCGATGATGGAGTGCGCCCTCAGACC
ATCGAGGCGCTGAAGATGGCCAAGGAAGCGGATTGTTCGGTTATAGTGGT
GCTGAATAAAGTAGATAAGATACCCTTCTCTGAGCGAGAAGCTGCACGCA
ATCGAGTACTGACTCAGCTGTTGAAGCACGATCTGATCGTGGAGGAGTTC
GGAGGAGATGTGCAGGTGGCAGAGGTGGCAGGGCGCACTGGTGAGGGGAT
TGACGCGCTCATGGAGAGCTTGCTCTTACAAGCCGAAGTGCTGGAGTTGC
AAGCCTCCATTACAGGCCAAGCGGAAGCGATTGTATTAGATGCCAGTGTA
GAGCGAGGTAGAGGTGTGGTGGCTGAGGTGTTAGTGAGATGGGGGTCCTT
GAGTGTGGGGGACGCTGTGGTGGTGGGTGGCAGCTATGGTAAGGTTAAGT
CTATGGTAAATGACCGCGGTGAGGCTGTGCGCACAGCCCTGCCATCACAC
TCGGTA
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