mRNA_D-dudresnayi_contig9800.28609.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9800.28609.1
Unique NamemRNA_D-dudresnayi_contig9800.28609.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9800.28609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9800contigD-dudresnayi_contig9800:7019..8035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D7FMP0
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size777
Cds size777
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.4990146-CDS-D-dudresnayi_contig9800:7018..75851622930937.4990146-CDS-D-dudresnayi_contig9800:7018..7585Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9800 7019..7585 -
1690557972.3417323-CDS-D-dudresnayi_contig9800:7018..75851690557972.3417323-CDS-D-dudresnayi_contig9800:7018..7585Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9800 7019..7585 -
1622930937.52633-CDS-D-dudresnayi_contig9800:7825..80351622930937.52633-CDS-D-dudresnayi_contig9800:7825..8035Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9800 7826..8035 -
1690557972.3517623-CDS-D-dudresnayi_contig9800:7825..80351690557972.3517623-CDS-D-dudresnayi_contig9800:7825..8035Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9800 7826..8035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9800.28609.1prot_D-dudresnayi_contig9800.28609.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9800 7019..8035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9800.28609.1

>prot_D-dudresnayi_contig9800.28609.1 ID=prot_D-dudresnayi_contig9800.28609.1|Name=mRNA_D-dudresnayi_contig9800.28609.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=259bp
MINSPLANQDVLRGVVEFVDPTQYLFFGLVSRAWRDAWGRRLTVTSIATA
DFSVSQLRYGLRCGLPTYLHGVCSMAAEGGHLKILQWLREIDCPWDEDVC
SIAAIEGHLEVLRWAKENGCRWNRETCSNAAFGGHLATLQWARDKGCPWD
EGSCCGAARGGHLDVLRWAKENGCPWDDRTCSFAARRGHLDVLRWARANS
CPWNEGTCTEAGKGGHLDILQWAREHGCPWDEEVCRFADRHGHEHVLAWA
RENGCPQY*
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mRNA from alignment at D-dudresnayi_contig9800:7019..8035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9800.28609.1 ID=mRNA_D-dudresnayi_contig9800.28609.1|Name=mRNA_D-dudresnayi_contig9800.28609.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1017bp|location=Sequence derived from alignment at D-dudresnayi_contig9800:7019..8035- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCAATTCCCCGTTGGCCAACCAGGATGTCCTCCGTGGCGTCGTGGA
GTTCGTGGACCCAACACAATATCTGTTTTTTGGGCTGGTGTCCAGAGCTT
GGAGGGATGCCTGGGGACGGCGCCTAACCGTCACGAGCATCGCGACAGCC
GATTTTTCGGTGTCGCAGCTACGGTATGGCCTGCGCTGTGGCCTGCCAAC
CTACCTCCACGTGTGCGACGCAGCTGCTGGCTTCGGCAACTTGGAGCTCC
TCCAGTGCGCGCGTGAAAACGGCTTCGAGTGGGGCATGTCGACGTGCAAG
GAGGCCGCGGGGCGTGGACACCTTGAAGTGCTTCAGTGGGCGCGAGCGAA
CGGCTGCCCCTGGGACTGGCGGGCGTCTGAGTGGGCTGCTGGGGGCGGGC
ACCTGGAGGTCCTGCAATGGGCCAGGATGATGGGCTGCGCCATGGACGAG
GGCGTGTGCTCGATGGCCGCGGAGGGTGGGCACTTGAAGATCCTACAGTG
GTTGCGGGAGATCGATTGCCCCTGGGACGAGGACGTGTGCTCGATTGCCG
CCATCGAGGGACACCTAGAAGTTCTTCGTTGGGCGAAGGAGAACGGTTGT
CGCTGGAATAGAGAAACTTGCAGTAACGCGGCGTTCGGCGGACACCTCGC
CACTCTCCAATGGGCCAGAGACAAGGGCTGTCCCTGGGACGAGGGAAGTT
GCTGCGGGGCTGCGAGGGGGGGGCACCTGGACGTGCTACGGTGGGCTAAG
GAAAACGGCTGCCCCTGGGACGACAGAACGTGCTCCTTTGCTGCGAGGCG
GGGGCACCTGGACGTGCTACGATGGGCGAGGGCAAACAGCTGCCCCTGGA
ACGAGGGAACGTGCACGGAGGCCGGAAAGGGAGGGCACCTGGACATTCTG
CAGTGGGCAAGAGAGCACGGCTGTCCCTGGGACGAGGAGGTGTGTCGCTT
CGCTGACAGGCACGGACATGAACACGTGCTCGCCTGGGCGCGGGAGAATG
GGTGCCCTCAATACTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9800:7019..8035-

>mRNA_D-dudresnayi_contig9800.28609.1 ID=mRNA_D-dudresnayi_contig9800.28609.1|Name=mRNA_D-dudresnayi_contig9800.28609.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at D-dudresnayi_contig9800:7019..8035- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCAATTCCCCGTTGGCCAACCAGGATGTCCTCCGTGGCGTCGTGGA
GTTCGTGGACCCAACACAATATCTGTTTTTTGGGCTGGTGTCCAGAGCTT
GGAGGGATGCCTGGGGACGGCGCCTAACCGTCACGAGCATCGCGACAGCC
GATTTTTCGGTGTCGCAGCTACGGTATGGCCTGCGCTGTGGCCTGCCAAC
CTACCTCCACATGATCAATTCCCCGTTGGCCAACCAGGATGTCCTCCGTG
GCGTCGTGGAGTTCGTGGACCCAACACAATATCTGTTTTTTGGGCTGGTG
TCCAGAGCTTGGAGGGATGCCTGGGGACGGCGCCTAACCGTCACGAGCAT
CGCGACAGCCGATTTTTCGGTGTCGCAGCTACGGTATGGCCTGCGCTGTG
GCCTGCCAACCTACCTCCACGGCGTGTGCTCGATGGCCGCGGAGGGTGGG
CACTTGAAGATCCTACAGTGGTTGCGGGAGATCGATTGCCCCTGGGACGA
GGACGTGTGCTCGATTGCCGCCATCGAGGGACACCTAGAAGTTCTTCGTT
GGGCGAAGGAGAACGGTTGTCGCTGGAATAGAGAAACTTGCAGTAACGCG
GCGTTCGGCGGACACCTCGCCACTCTCCAATGGGCCAGAGACAAGGGCTG
TCCCTGGGACGAGGGAAGTTGCTGCGGGGCTGCGAGGGGGGGGCACCTGG
ACGTGCTACGGTGGGCTAAGGAAAACGGCTGCCCCTGGGACGACAGAACG
TGCTCCTTTGCTGCGAGGCGGGGGCACCTGGACGTGCTACGATGGGCGAG
GGCAAACAGCTGCCCCTGGAACGAGGGAACGTGCACGGAGGCCGGAAAGG
GAGGGCACCTGGACATTCTGCAGTGGGCAAGAGAGCACGGCTGTCCCTGG
GACGAGGAGGTGTGTCGCTTCGCTGACAGGCACGGACATGAACACGTGCT
CGCCTGGGCGCGGGAGAATGGGTGCCCTCAATACTGAGGCGTGTGCTCGA
TGGCCGCGGAGGGTGGGCACTTGAAGATCCTACAGTGGTTGCGGGAGATC
GATTGCCCCTGGGACGAGGACGTGTGCTCGATTGCCGCCATCGAGGGACA
CCTAGAAGTTCTTCGTTGGGCGAAGGAGAACGGTTGTCGCTGGAATAGAG
AAACTTGCAGTAACGCGGCGTTCGGCGGACACCTCGCCACTCTCCAATGG
GCCAGAGACAAGGGCTGTCCCTGGGACGAGGGAAGTTGCTGCGGGGCTGC
GAGGGGGGGGCACCTGGACGTGCTACGGTGGGCTAAGGAAAACGGCTGCC
CCTGGGACGACAGAACGTGCTCCTTTGCTGCGAGGCGGGGGCACCTGGAC
GTGCTACGATGGGCGAGGGCAAACAGCTGCCCCTGGAACGAGGGAACGTG
CACGGAGGCCGGAAAGGGAGGGCACCTGGACATTCTGCAGTGGGCAAGAG
AGCACGGCTGTCCCTGGGACGAGGAGGTGTGTCGCTTCGCTGACAGGCAC
GGACATGAACACGTGCTCGCCTGGGCGCGGGAGAATGGGTGCCCTCAATA
CTGA
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