mRNA_D-dudresnayi_contig9792.28597.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9792.28597.1
Unique NamemRNA_D-dudresnayi_contig9792.28597.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9792.28597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9792contigD-dudresnayi_contig9792:6538..7271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size734
Cds size456
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.148229-UTR-D-dudresnayi_contig9792:6537..68151622930936.148229-UTR-D-dudresnayi_contig9792:6537..6815Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9792 6538..6815 +
1690557971.786366-UTR-D-dudresnayi_contig9792:6537..68151690557971.786366-UTR-D-dudresnayi_contig9792:6537..6815Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9792 6538..6815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.1704485-CDS-D-dudresnayi_contig9792:6815..72711622930936.1704485-CDS-D-dudresnayi_contig9792:6815..7271Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9792 6816..7271 +
1690557971.7991555-CDS-D-dudresnayi_contig9792:6815..72711690557971.7991555-CDS-D-dudresnayi_contig9792:6815..7271Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9792 6816..7271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9792.28597.1prot_D-dudresnayi_contig9792.28597.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9792 6816..7271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9792.28597.1

>prot_D-dudresnayi_contig9792.28597.1 ID=prot_D-dudresnayi_contig9792.28597.1|Name=mRNA_D-dudresnayi_contig9792.28597.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=152bp
MKICDYQRVLGPLSPQPRKDYAPLILPHSFSVPARLLRSCCCCYCCFCVS
YATPSSYRRVSSSPSVTGLCMHTRHRPILSSLPALLHAKTNLLLLHLWSW
SWKTKTLALDGLNQALSIPSTTTVFIPPLSSNPAYSAAHAPSIKVTSVGF
R*
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mRNA from alignment at D-dudresnayi_contig9792:6538..7271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9792.28597.1 ID=mRNA_D-dudresnayi_contig9792.28597.1|Name=mRNA_D-dudresnayi_contig9792.28597.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=734bp|location=Sequence derived from alignment at D-dudresnayi_contig9792:6538..7271+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAATAATTGTCTGAAGTGCTGCTTGTGTCACCCTCTCGCACGCACGCAGA
AGAAATGGAGGACAAACAACGAAATATTGACATCAAGCGGAGCAATAATA
CAACAGTAGTATTAATAGTGCACGGCAACAACACCAACACCGAATGCCAC
GATGTACAAAGAATATGCAGAACATCTCCCTATCATCTAGTCAGGCATGC
CTCACGTCAACGTCAAACTATGGCATGTCTAGAAACCCGCGCGAAAGCGC
TTCGGTCTAGCGTGTCCACTCATCAAGCATGAAAATATGCGACTATCAAC
GTGTCTTAGGGCCTCTGTCACCACAACCAAGAAAGGATTATGCACCCCTC
ATCCTACCCCACTCCTTCTCGGTTCCGGCTCGCCTGCTCCGCTCCTGCTG
CTGCTGCTATTGCTGCTTTTGTGTCTCGTATGCGACTCCGTCCTCCTATC
GGCGAGTATCGTCCTCGCCTTCTGTCACTGGGCTCTGCATGCATACTCGC
CACCGTCCTATACTATCCAGTCTCCCTGCTCTTCTTCATGCAAAAACCAA
CCTCCTCTTACTGCACCTGTGGTCCTGGTCTTGGAAAACAAAAACTCTCG
CTCTGGATGGGCTCAACCAGGCCCTCTCCATCCCGTCGACGACGACGGTC
TTCATCCCACCCTTGTCGTCGAATCCAGCCTATTCAGCGGCACACGCTCC
CTCTATCAAGGTTACGAGCGTCGGCTTTCGGTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9792:6538..7271+

>mRNA_D-dudresnayi_contig9792.28597.1 ID=mRNA_D-dudresnayi_contig9792.28597.1|Name=mRNA_D-dudresnayi_contig9792.28597.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at D-dudresnayi_contig9792:6538..7271+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAAATATGCGACTATCAACGTGTCTTAGGGCCTCTGTCACCACAACC
AAGAAAGGATTATGCACCCCTCATCCTACCCCACTCCTTCTCGGTTCCGG
CTCGCCTGCTCCGCTCCTGCTGCTGCTGCTATTGCTGCTTTTGTGTCTCG
TATGCGACTCCGTCCTCCTATCGGCGAGTATCGTCCTCGCCTTCTGTCAC
TGGGCTCTGCATGCATACTCGCCACCGTCCTATACTATCCAGTCTCCCTG
CTCTTCTTCATGCAAAAACCAACCTCCTCTTACTGCACCTGTGGTCCTGG
TCTTGGAAAACAAAAACTCTCGCTCTGGATGGGCTCAACCAGGCCCTCTC
CATCCCGTCGACGACGACGGTCTTCATCCCACCCTTGTCGTCGAATCCAG
CCTATTCAGCGGCACACGCTCCCTCTATCAAGGTTACGAGCGTCGGCTTT
CGGTGAATGAAAATATGCGACTATCAACGTGTCTTAGGGCCTCTGTCACC
ACAACCAAGAAAGGATTATGCACCCCTCATCCTACCCCACTCCTTCTCGG
TTCCGGCTCGCCTGCTCCGCTCCTGCTGCTGCTGCTATTGCTGCTTTTGT
GTCTCGTATGCGACTCCGTCCTCCTATCGGCGAGTATCGTCCTCGCCTTC
TGTCACTGGGCTCTGCATGCATACTCGCCACCGTCCTATACTATCCAGTC
TCCCTGCTCTTCTTCATGCAAAAACCAACCTCCTCTTACTGCACCTGTGG
TCCTGGTCTTGGAAAACAAAAACTCTCGCTCTGGATGGGCTCAACCAGGC
CCTCTCCATCCCGTCGACGACGACGGTCTTCATCCCACCCTTGTCGTCGA
ATCCAGCCTATTCAGCGGCACACGCTCCCTCTATCAAGGTTACGAGCGTC
GGCTTTCGGTGA
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