mRNA_D-dudresnayi_contig9774.28574.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9774.28574.1
Unique NamemRNA_D-dudresnayi_contig9774.28574.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot
Match: A0A6H5L8S9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 6.670e-34
Identity = 82/143 (57.34%), Postives = 112/143 (78.32%), Query Frame = 1 
Query:  439 VETAPPE-VRQLLESSQNTIALLLLLLSHYVFTHIVGISAFVLGTVVLVGLDRRLQSHADALVLKSRFVLIGVAVTAVVTVAASAFAFNKFPEGEALFRGLILATPKPD-VSSVAAVIRTTVVVDLWARLLSITIKALLALLA 861
            VE  PPE + + L  ++ TIALL+LL+ HY+ TH+VGI+AF +GT ++V LD+RL SHA A  L++RFVL+GVAVTAVV VA SA   + FP+GE L R L+L  PKP  + +V+AVIRTT+VVD+WARLLS+T+KA+LA+++
Sbjct:  282 VEGNPPEELLRALVGARITIALLVLLMCHYIVTHLVGIAAFSMGTAIVVVLDQRLWSHAGAQTLRNRFVLLGVAVTAVVVVALSAMVLSNFPQGEGLLRRLLLVAPKPPALGTVSAVIRTTIVVDIWARLLSVTVKAVLAVVS 424
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BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot
Match: D7FJ26_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-6
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  439 VETAPPE-VRQLLESSQNTIALLLLLLSHYVFTHIVGISAFVLGTVVLVGLDRRLQSHADA 618
            VET PPE + + L  ++ TIALLLLL+ HY+ TH++GI+AF +GT ++V LD+RL SH+ A
Sbjct:  303 VETNPPEELLRALVGARITIALLLLLMCHYIVTHLLGIAAFSMGTAIVVVLDQRLWSHSGA 363
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8S9_9PHAE6.670e-3457.34RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FJ26_ECTSI1.910e-654.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9774contigD-dudresnayi_contig9774:2023..6139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog2880.D7FJ26
KEGG koko:K22379
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
EggNOG free text desc.protein polyubiquitination
EggNOG OGsCOG5243@1,KOG0802@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categorymitochondrion
Exons4
Model size1028
Cds size1026
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9774.28574.1prot_D-dudresnayi_contig9774.28574.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9774 2023..6139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.9095511-CDS-D-dudresnayi_contig9774:2022..24581622930933.9095511-CDS-D-dudresnayi_contig9774:2022..2458Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 2023..2458 +
1690557970.7570183-CDS-D-dudresnayi_contig9774:2022..24581690557970.7570183-CDS-D-dudresnayi_contig9774:2022..2458Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 2023..2458 +
1622930933.9321978-CDS-D-dudresnayi_contig9774:4882..50671622930933.9321978-CDS-D-dudresnayi_contig9774:4882..5067Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 4883..5067 +
1690557970.768745-CDS-D-dudresnayi_contig9774:4882..50671690557970.768745-CDS-D-dudresnayi_contig9774:4882..5067Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 4883..5067 +
1622930933.9548986-CDS-D-dudresnayi_contig9774:5326..54231622930933.9548986-CDS-D-dudresnayi_contig9774:5326..5423Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 5327..5423 +
1690557970.778355-CDS-D-dudresnayi_contig9774:5326..54231690557970.778355-CDS-D-dudresnayi_contig9774:5326..5423Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 5327..5423 +
1622930933.9689283-CDS-D-dudresnayi_contig9774:5831..61391622930933.9689283-CDS-D-dudresnayi_contig9774:5831..6139Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 5832..6139 +
1690557970.788717-CDS-D-dudresnayi_contig9774:5831..61391690557970.788717-CDS-D-dudresnayi_contig9774:5831..6139Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 5832..6139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9774.28574.1

>prot_D-dudresnayi_contig9774.28574.1 ID=prot_D-dudresnayi_contig9774.28574.1|Name=mRNA_D-dudresnayi_contig9774.28574.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=342bp
ASGAARWRQAAVAAFSRNRTSIIPGLGRGASFGRRNGRAGVGTGGGAGGG
AGIGGRTATVNPTTGSQGRRAGVRNRGTSRRDEARQRGETQGLPSRGSRG
RREEGSGEGRERGGEDVGVAQESSSPSTSETEADADANANAPGPAVVETA
PPEVRQLLESSQNTIALLLLLLSHYVFTHIVGISAFVLGTVVLVGLDRRL
QSHADALVLKSRFVLIGVAVTAVVTVAASAFAFNKFPEGEALFRGLILAT
PKPDVSSVAAVIRTTVVVDLWARLLSITIKALLALLAGRGSNNDNSNNNN
NPCLSGCLTSCSRFHRCRGRFVEVLRRSGSADGRPRLRESPR
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mRNA from alignment at D-dudresnayi_contig9774:2023..6139+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9774.28574.1 ID=mRNA_D-dudresnayi_contig9774.28574.1|Name=mRNA_D-dudresnayi_contig9774.28574.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4117bp|location=Sequence derived from alignment at D-dudresnayi_contig9774:2023..6139+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCCAGCGGCGCAGCGCGCTGGCGACAGGCGGCGGTAGCGGCATTCTCAAG
GAACCGTACCTCGATCATTCCTGGCCTTGGGAGAGGTGCTAGCTTTGGAA
GGAGAAATGGCCGCGCGGGCGTGGGTACCGGCGGTGGTGCCGGTGGTGGC
GCTGGTATTGGAGGAAGGACTGCTACCGTGAACCCTACTACTGGTAGCCA
GGGGCGAAGGGCGGGCGTGAGAAATAGAGGGACTTCTCGCAGGGACGAAG
CAAGGCAACGAGGGGAGACGCAAGGTCTACCGTCGAGGGGAAGCCGAGGA
CGACGAGAGGAAGGAAGCGGAGAGGGCAGGGAAAGGGGGGGTGAAGATGT
GGGTGTGGCGCAAGAGTCGAGCTCGCCGTCCACTTCGGAAACGGAAGCCG
ATGCCGATGCCAATGCCAATGCCCCGGGGCCAGCAGGTGACCGACTGCTT
TGTGGGGCCTTTGAACAAAGTTTAACACATGATATCTATGAACCACTCGG
AATGCAGCACTCAGCGATAACGTCGTTGCCTTCGTATCTAGTGTGCGTAG
TATGTGTGAATTCGCATAGTATAGGTTAAGGTACAACATCATGATGTGAA
AATGTCACACATGCACAACAGTTACTTCCCGTCCCCCTCCGAAAGATTAT
GATCCAGTGCACACGATGATGGGGCCTGTTTCCCAAAATTTTCCTGTTGA
GCCTGGGACACCCCAGGGGAGCCACTACGTTATAACTTATCTGAGGACCG
ATGGAATCCGCGCGATCGATGTATCACACAGCGACGTTGACGATTATCCC
CTGGCCCCCGAACCAGTTTGGAACGTCACGGCTGATGTCTTTGTAAGTAA
AAATAATATACCTGAAGCCCCAGTGGCTCAGTGGTCTACTTTGTTGAGTA
CCGTACCATAAGTTGAGGTTCCTGCTAGGGTTCTGCCGGTTCCCGCGTGT
CGAGGGTTAGTGAGGCTGATGGTGTGCGCAGGGAACGATATCATGTAGCG
GGAGCACTATTCTGCAGGAATATTACGTTGGTGGCTGTAGCTCTCGTATA
CTCGTACAGCACCCTGCTATTAATAATCGTACGTCGTGAGAGTTAGTACT
CGTAAGGAGAGTCATGTGATTCTGTGTGGTTATTGTTTACGGACAGGACA
GTACATGCCCCCTAATTTGATGAAAGTCGACGAGGGACGAAAGTGCTGCA
CTCTTCTCGCGACAAAAATGTAGGCACGTACCGTAGTGGGAAGACGGGAG
GAGTGCCTGCTACGTGACCCCGGATCTGAGTTACGAAGAAAGATGGAGCT
AGAGAAAGAATAGGGCGAAAATAATAAATGGAAAAAAAAAAAAAAAAAAA
AATGCCTTGGTGTATGCTTTTCTTTCTGGAGTTTTGTTTATTGACAAGGA
CACTACATGGTTGATGTTACCGTTATGATTGTCGTTACTATGAAGTAGTA
ATTTTGGTTTTTGTTTTGTTTTGGTTTTGTTTGGTTTGCTGTGGTATCTA
CATATACAGCGTTCCGTAACTATGAAGTCATGCACGGTTATTATTTTCGT
TTTTTGTCCCCCTCCGAAACGCTATATAATCCAGTGCACAAGTTGATGGG
GCCTAAATTACCCTCAAAAATATCCTGTAGAGTCTGGGACATTCCAGGGG
AGTCGCTGCGTTATACCTCATCTGAGGACCGATATAATCCGCGCGACCGA
TGTACCACACTGTGAGGTTGACGATTATCCCCTGGCCCCCGAACCAGTTT
GGAATGTCACGACTGATGTCTTTGTTAAGTGAAAATGTTAATACTATCGA
TTATTATTTTTACTTACAAAGACATCAGCCGTGACGTTCCAAACTGGTTC
GGGGGCCAGGGGATAATCGTAACCTCACTGTGTGATACATCGGTTGCGCG
GATTCTATCGGTCCTCAGATGAGATATAACGCAGTGGCTCCCCTGGGGTG
TCCCAGGCTCTACAGGATAATTTTGGGAAACAGGCCCCATCATCGTGTGC
ACTGGATCATAATCTTTCGGAGAGGGACGGAAAGTAACTGTGCATGTGTA
GCATTTTCACATCATGTGTACGTACCTGAATCTATACTATGCGAATTCAC
ACTTACTACTAGACACGAAGGCAACGACGTTATCGGTGTCACCAGTACAC
CAATACACTATCACACCAAACTTACATGACGTTATCGGTTTCACCAATAC
ACCAATACACTTCCACAACACACTTACATCACATGCAACTCCGAACGTAA
TATGTTATCGGTGTCATCACCACAATTAAATCACATTACTTACAACTACG
AGGAGACACCAAACAAAACCAAAAGCAAAACCAAAATCCGAACCCAACAG
CGCCAAGTATTTCATACTCAAATTGTAAAATATGGTAAAACACCAACAAC
CTAATAGAATACTACTCTACTACAACAAAAAAGTAGACATAGGCAAACAA
GCAACGAAAAGCACCAGTCAATGATTTAGCATTATTAATTTTATTTACGG
TGGCATGAGCCACCAAACAGAAGCAAAAACACAACCAAAACCCAAAACCC
AACAGTGTCAAGTATGCGTACTCAGATTACAAATTATGGTAAACAGCAAC
AACATAGATAGGCGGTATTCTATCACAGCAAATAATTAAACATAAGCAAA
CAAGCAACGAAAACCAGTATTTGCTTTAATATTATTATTGCTCTACGGGA
TAATTTTGGGAAAGCAGGCCCCATCATCGCGTGCGTAAATTTTATGTTTA
GCCGACCTCCCTCTTTTCGCTGTTCAGCCTTGCCCAGCACAGACGCGAAC
CGTTGCCCACCTGCTCCACCGTCGGTCGTTGCTGCCTGCCATCGGTCGCT
TGTCGCCCAGTCGTGGAGACGGCTCCGCCCGAGGTGCGACAATTGCTGGA
GAGCTCTCAGAACACGATTGCCCTGCTGTTGCTTCTTCTGTCACACTACG
TCTTCACTCACATCGTCGGTATCTCAGCCTTTGTCCTCGGAACGGTGGTA
CTCGTGGGTCTGGACCGGCGGCTGCAGTCACACGCTGACGCCCTGGTACG
TTTTTTTTTTTCTTCCTTTTTTAAAGCCGAAGGTGGCTCACTGTAACAAC
AGTAGTAGAACTGGCTTAGACTACTCGACTCTAATGCGATATTGATGTAC
CGGCCACCACAGTATAGCTGTTGCGTGTACTCTTGCTTGGCGTTGTACTG
GCTGTATGTGTGATGCGGTAGATTTTGGAAAGTTAAAGTTGGTATTTTTT
TGGCGTTTGGTGTGTTGAATATCGCCCGGTGTCTTCTCTTACCGCCTTCC
ACAGGTTCTCAAAAGCCGGTTTGTGCTGATCGGCGTTGCTGTGACGGCGG
TGGTTACCGTAGCCGCCTCCGCATTCGCGTTCAACAAGTTCCCGGAGGGA
GGTGCGTGGAGCATGCAACGCCTCGTATTGTTAAGCGTAGCGTGCGTTGG
AAGTATCCGTGTTGAAGAACTTCCGGGGGAACCCTCGTTGCGGTGTCACG
GTCAGTCAGGATTACATCCACGGACATGCAAAGTTCATGCTGTACTCGGG
AGCTTTTATCGGAAATTTGATAATCGGAACCAGATAAGCACATGAAAATT
GTCATATGATGTGGTAAGGCGTAGCCAGCCCTGAGCAATCATTCAGTGCC
ACCAGCCGAACGCTGAAAACACCGGGGCGGGGGGGGAGGGATATAAATGT
TATGCCAGGTGTGTAGTCTCCATGATATTTTTGCATCAATGCCCTCACCC
GTGCACCCGCCGTTACTACGTTTCGGTCGCGTTGTTTCCATGGGTCTACT
GCCCAACAGAGGCGCTATTTCGCGGCCTCATCCTGGCGACGCCAAAGCCC
GACGTGAGCTCTGTGGCCGCCGTGATACGCACGACGGTGGTCGTCGACCT
TTGGGCACGTCTCCTCAGCATCACAATCAAAGCCCTCCTAGCCCTCCTAG
CCGGCCGTGGCAGCAACAACGACAACAGCAACAACAATAACAACCCATGC
CTTTCTGGATGTCTCACCAGCTGCAGTCGGTTTCATCGTTGCCGGGGGCG
TTTTGTGGAGGTATTGAGGAGAAGCGGCAGCGCGGATGGGCGGCCGCGTC
TTCGCGAATCGCCGAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9774:2023..6139+

>mRNA_D-dudresnayi_contig9774.28574.1 ID=mRNA_D-dudresnayi_contig9774.28574.1|Name=mRNA_D-dudresnayi_contig9774.28574.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at D-dudresnayi_contig9774:2023..6139+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCCAGCGGCGCAGCGCGCTGGCGACAGGCGGCGGTAGCGGCATTCTCAAG
GAACCGTACCTCGATCATTCCTGGCCTTGGGAGAGGTGCTAGCTTTGGAA
GGAGAAATGGCCGCGCGGGCGTGGGTACCGGCGGTGGTGCCGGTGGTGGC
GCTGGTATTGGAGGAAGGACTGCTACCGTGAACCCTACTACTGGTAGCCA
GGGGCGAAGGGCGGGCGTGAGAAATAGAGGGACTTCTCGCAGGGACGAAG
CAAGGCAACGAGGGGAGACGCAAGGTCTACCGTCGAGGGGAAGCCGAGGA
CGACGAGAGGAAGGAAGCGGAGAGGGCAGGGAAAGGGGGGGTGAAGATGT
GGGTGTGGCGCAAGAGTCGAGCTCGCCGTCCACTTCGGAAACGGAAGCCG
ATGCCGATGCCAATGCCAATGCCCCGGGGCCAGCAGGCCAGCGGCGCAGC
GCGCTGGCGACAGGCGGCGGTAGCGGCATTCTCAAGGAACCGTACCTCGA
TCATTCCTGGCCTTGGGAGAGGTGCTAGCTTTGGAAGGAGAAATGGCCGC
GCGGGCGTGGGTACCGGCGGTGGTGCCGGTGGTGGCGCTGGTATTGGAGG
AAGGACTGCTACCGTGAACCCTACTACTGGTAGCCAGGGGCGAAGGGCGG
GCGTGAGAAATAGAGGGACTTCTCGCAGGGACGAAGCAAGGCAACGAGGG
GAGACGCAAGGTCTACCGTCGAGGGGAAGCCGAGGACGACGAGAGGAAGG
AAGCGGAGAGGGCAGGGAAAGGGGGGGTGAAGATGTGGGTGTGGCGCAAG
AGTCGAGCTCGCCGTCCACTTCGGAAACGGAAGCCGATGCCGATGCCAAT
GCCAATGCCCCGGGGCCAGCAGTCGTGGAGACGGCTCCGCCCGAGGTGCG
ACAATTGCTGGAGAGCTCTCAGAACACGATTGCCCTGCTGTTGCTTCTTC
TGTCACACTACGTCTTCACTCACATCGTCGGTATCTCAGCCTTTGTCCTC
GGAACGGTGGTACTCGTGGGTCTGGACCGGCGGCTGCAGTCACACGCTGA
CGCCCTGTCGTGGAGACGGCTCCGCCCGAGGTGCGACAATTGCTGGAGAG
CTCTCAGAACACGATTGCCCTGCTGTTGCTTCTTCTGTCACACTACGTCT
TCACTCACATCGTCGGTATCTCAGCCTTTGTCCTCGGAACGGTGGTACTC
GTGGGTCTGGACCGGCGGCTGCAGTCACACGCTGACGCCCTGGTTCTCAA
AAGCCGGTTTGTGCTGATCGGCGTTGCTGTGACGGCGGTGGTTACCGTAG
CCGCCTCCGCATTCGCGTTCAACAAGTTCCCGGAGGGAGGTTCTCAAAAG
CCGGTTTGTGCTGATCGGCGTTGCTGTGACGGCGGTGGTTACCGTAGCCG
CCTCCGCATTCGCGTTCAACAAGTTCCCGGAGGGAGAGGCGCTATTTCGC
GGCCTCATCCTGGCGACGCCAAAGCCCGACGTGAGCTCTGTGGCCGCCGT
GATACGCACGACGGTGGTCGTCGACCTTTGGGCACGTCTCCTCAGCATCA
CAATCAAAGCCCTCCTAGCCCTCCTAGCCGGCCGTGGCAGCAACAACGAC
AACAGCAACAACAATAACAACCCATGCCTTTCTGGATGTCTCACCAGCTG
CAGTCGGTTTCATCGTTGCCGGGGGCGTTTTGTGGAGGTATTGAGGAGAA
GCGGCAGCGCGGATGGGCGGCCGCGTCTTCGCGAATCGCCGAGGAGGCGC
TATTTCGCGGCCTCATCCTGGCGACGCCAAAGCCCGACGTGAGCTCTGTG
GCCGCCGTGATACGCACGACGGTGGTCGTCGACCTTTGGGCACGTCTCCT
CAGCATCACAATCAAAGCCCTCCTAGCCCTCCTAGCCGGCCGTGGCAGCA
ACAACGACAACAGCAACAACAATAACAACCCATGCCTTTCTGGATGTCTC
ACCAGCTGCAGTCGGTTTCATCGTTGCCGGGGGCGTTTTGTGGAGGTATT
GAGGAGAAGCGGCAGCGCGGATGGGCGGCCGCGTCTTCGCGAATCGCCGA
GG
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