mRNA_D-dudresnayi_contig9774.28573.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9774.28573.1
Unique NamemRNA_D-dudresnayi_contig9774.28573.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9774.28573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9774contigD-dudresnayi_contig9774:1087..2015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size570
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.856371-CDS-D-dudresnayi_contig9774:1086..11391622930933.856371-CDS-D-dudresnayi_contig9774:1086..1139Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 1087..1139 +
1690557970.7260113-CDS-D-dudresnayi_contig9774:1086..11391690557970.7260113-CDS-D-dudresnayi_contig9774:1086..1139Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 1087..1139 +
1622930933.8709767-CDS-D-dudresnayi_contig9774:1499..20131622930933.8709767-CDS-D-dudresnayi_contig9774:1499..2013Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 1500..2013 +
1690557970.7417085-CDS-D-dudresnayi_contig9774:1499..20131690557970.7417085-CDS-D-dudresnayi_contig9774:1499..2013Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9774 1500..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9774.28573.1prot_D-dudresnayi_contig9774.28573.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9774 1087..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9774.28573.1

>prot_D-dudresnayi_contig9774.28573.1 ID=prot_D-dudresnayi_contig9774.28573.1|Name=mRNA_D-dudresnayi_contig9774.28573.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=189bp
VLREHRAESEVMQGEEYICSTTDDEAISPLVPNRHPRSPNPRSDDRQPES
SSAKRPPSRPVADRLRVEENYHISSSGAEQHEEAQALLFTTRRSRPQPIR
PSRSPSPPPSESHGHQSPSSSSEYAHVSPPSPTENLLAAPSGSPRPPTLA
RGRSLDSGRGPGDNSVQESTVSTPSTAGGAVSARLVSAS
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mRNA from alignment at D-dudresnayi_contig9774:1087..2015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9774.28573.1 ID=mRNA_D-dudresnayi_contig9774.28573.1|Name=mRNA_D-dudresnayi_contig9774.28573.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=929bp|location=Sequence derived from alignment at D-dudresnayi_contig9774:1087..2015+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTTCTACGCGAGCACAGGGCGGAGTCTGAGGTCATGCAGGGAGAGGAATA
CATGTAAGGGGCTGTTGTGTACCTGGGGTTGTCTTTTTGCTGAGTTCCAG
TGCGGTTTGTATTTCGTTTGAGTTGTTTCTCGACGCCAGAAATGTTGTTC
TATACTGACTACTGTGCCGTGGTGCACCCAAGCATATCGTGTTTATCTCG
TGCGCTTGTTTTGAGGGCTATCATTACGACTACTACTGTTGTTGTACTGT
GCAAACACACAGCAGGCTAAAACGTACAGTTACCTGCCTCAAGTAGCGTG
CAAACTCCCGTTTATATCCATCATGCTCATTCTGCGCCGTTACGTGCATA
TCCCTCCCTACGCCCGTTGTCTTGCATATCCTCCCGGTCGCAAACAACGT
GCAACAACAACAGTTGCTCCACAACAGACGATGAGGCAATTTCGCCACTG
GTGCCGAACAGACACCCAAGGTCCCCAAATCCTCGGAGTGATGACCGACA
GCCCGAGTCGTCCTCCGCGAAGCGACCACCATCCAGGCCCGTGGCCGACA
GATTACGGGTCGAAGAAAACTATCACATTTCATCCAGCGGTGCAGAGCAA
CACGAAGAAGCGCAAGCGTTATTGTTCACAACCAGGCGAAGTCGACCTCA
GCCCATTCGTCCGTCGCGTTCGCCATCCCCACCCCCCTCCGAGAGCCACG
GGCATCAAAGTCCCAGCTCTTCTTCCGAGTATGCTCATGTGTCTCCCCCT
TCACCAACAGAAAACCTGTTAGCGGCCCCTTCTGGTAGCCCTCGTCCCCC
CACTTTAGCTCGTGGGCGTAGTCTTGACAGTGGCCGTGGTCCTGGTGACA
ACAGTGTCCAGGAGTCCACCGTAAGCACACCCTCTACGGCGGGCGGTGCA
GTCTCCGCGCGGCTCGTGTCTGCATCCGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9774:1087..2015+

>mRNA_D-dudresnayi_contig9774.28573.1 ID=mRNA_D-dudresnayi_contig9774.28573.1|Name=mRNA_D-dudresnayi_contig9774.28573.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at D-dudresnayi_contig9774:1087..2015+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTTCTACGCGAGCACAGGGCGGAGTCTGAGGTCATGCAGGGAGAGGAATA
CATGTTCTACGCGAGCACAGGGCGGAGTCTGAGGTCATGCAGGGAGAGGA
ATACATTTGCTCCACAACAGACGATGAGGCAATTTCGCCACTGGTGCCGA
ACAGACACCCAAGGTCCCCAAATCCTCGGAGTGATGACCGACAGCCCGAG
TCGTCCTCCGCGAAGCGACCACCATCCAGGCCCGTGGCCGACAGATTACG
GGTCGAAGAAAACTATCACATTTCATCCAGCGGTGCAGAGCAACACGAAG
AAGCGCAAGCGTTATTGTTCACAACCAGGCGAAGTCGACCTCAGCCCATT
CGTCCGTCGCGTTCGCCATCCCCACCCCCCTCCGAGAGCCACGGGCATCA
AAGTCCCAGCTCTTCTTCCGAGTATGCTCATGTGTCTCCCCCTTCACCAA
CAGAAAACCTGTTAGCGGCCCCTTCTGGTAGCCCTCGTCCCCCCACTTTA
GCTCGTGGGCGTAGTCTTGACAGTGGCCGTGGTCCTGGTGACAACAGTGT
CCAGGAGTCCACCGTAAGCACACCCTCTACGGCGGGCGGTGCAGTCTCCG
CGCGGCTCGTGTCTGCATCCTTGCTCCACAACAGACGATGAGGCAATTTC
GCCACTGGTGCCGAACAGACACCCAAGGTCCCCAAATCCTCGGAGTGATG
ACCGACAGCCCGAGTCGTCCTCCGCGAAGCGACCACCATCCAGGCCCGTG
GCCGACAGATTACGGGTCGAAGAAAACTATCACATTTCATCCAGCGGTGC
AGAGCAACACGAAGAAGCGCAAGCGTTATTGTTCACAACCAGGCGAAGTC
GACCTCAGCCCATTCGTCCGTCGCGTTCGCCATCCCCACCCCCCTCCGAG
AGCCACGGGCATCAAAGTCCCAGCTCTTCTTCCGAGTATGCTCATGTGTC
TCCCCCTTCACCAACAGAAAACCTGTTAGCGGCCCCTTCTGGTAGCCCTC
GTCCCCCCACTTTAGCTCGTGGGCGTAGTCTTGACAGTGGCCGTGGTCCT
GGTGACAACAGTGTCCAGGAGTCCACCGTAAGCACACCCTCTACGGCGGG
CGGTGCAGTCTCCGCGCGGCTCGTGTCTGCATCC
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