mRNA_D-dudresnayi_contig9770.28570.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9770.28570.1
Unique NamemRNA_D-dudresnayi_contig9770.28570.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9770.28570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9770contigD-dudresnayi_contig9770:6823..7156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.5104353-UTR-D-dudresnayi_contig9770:6822..68531622930933.5104353-UTR-D-dudresnayi_contig9770:6822..6853Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9770 6823..6853 +
1690557970.563914-UTR-D-dudresnayi_contig9770:6822..68531690557970.563914-UTR-D-dudresnayi_contig9770:6822..6853Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9770 6823..6853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.5280457-CDS-D-dudresnayi_contig9770:6853..71561622930933.5280457-CDS-D-dudresnayi_contig9770:6853..7156Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9770 6854..7156 +
1690557970.5761116-CDS-D-dudresnayi_contig9770:6853..71561690557970.5761116-CDS-D-dudresnayi_contig9770:6853..7156Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9770 6854..7156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9770.28570.1prot_D-dudresnayi_contig9770.28570.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9770 6854..7156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9770.28570.1

>prot_D-dudresnayi_contig9770.28570.1 ID=prot_D-dudresnayi_contig9770.28570.1|Name=mRNA_D-dudresnayi_contig9770.28570.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=101bp
MCAIRSIGLRLETDDGVVRTAAAGGSVLASPPVLASPPTKSISKAKGILA
RAAMAISYACVDKTPASSDGVNVAARDSTNGHYDRHERSRRIAEGSGVVS
R
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mRNA from alignment at D-dudresnayi_contig9770:6823..7156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9770.28570.1 ID=mRNA_D-dudresnayi_contig9770.28570.1|Name=mRNA_D-dudresnayi_contig9770.28570.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at D-dudresnayi_contig9770:6823..7156+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGCGGTGCGGCGGTCGAGGACCAGCGGCACATGTGTGCCATCAGGAGTA
TCGGGTTGAGACTCGAAACTGACGATGGAGTTGTGCGAACCGCAGCAGCT
GGTGGTTCTGTCCTGGCATCCCCGCCCGTCCTGGCCTCCCCGCCTACCAA
ATCGATCTCCAAAGCTAAAGGGATTCTCGCGCGAGCGGCGATGGCGATAT
CCTACGCCTGTGTCGACAAGACCCCCGCCAGCAGCGACGGCGTTAATGTC
GCGGCGCGGGATAGCACGAACGGCCACTACGATCGCCACGAACGGAGCCG
CCGTATAGCTGAAGGATCGGGGGTGGTGTCGAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9770:6823..7156+

>mRNA_D-dudresnayi_contig9770.28570.1 ID=mRNA_D-dudresnayi_contig9770.28570.1|Name=mRNA_D-dudresnayi_contig9770.28570.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at D-dudresnayi_contig9770:6823..7156+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTGTGCCATCAGGAGTATCGGGTTGAGACTCGAAACTGACGATGGAGT
TGTGCGAACCGCAGCAGCTGGTGGTTCTGTCCTGGCATCCCCGCCCGTCC
TGGCCTCCCCGCCTACCAAATCGATCTCCAAAGCTAAAGGGATTCTCGCG
CGAGCGGCGATGGCGATATCCTACGCCTGTGTCGACAAGACCCCCGCCAG
CAGCGACGGCGTTAATGTCGCGGCGCGGGATAGCACGAACGGCCACTACG
ATCGCCACGAACGGAGCCGCCGTATAGCTGAAGGATCGGGGGTGGTGTCG
AGGATGTGTGCCATCAGGAGTATCGGGTTGAGACTCGAAACTGACGATGG
AGTTGTGCGAACCGCAGCAGCTGGTGGTTCTGTCCTGGCATCCCCGCCCG
TCCTGGCCTCCCCGCCTACCAAATCGATCTCCAAAGCTAAAGGGATTCTC
GCGCGAGCGGCGATGGCGATATCCTACGCCTGTGTCGACAAGACCCCCGC
CAGCAGCGACGGCGTTAATGTCGCGGCGCGGGATAGCACGAACGGCCACT
ACGATCGCCACGAACGGAGCCGCCGTATAGCTGAAGGATCGGGGGTGGTG
TCGAGG
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