mRNA_D-dudresnayi_contig9770.28569.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9770.28569.1
Unique NamemRNA_D-dudresnayi_contig9770.28569.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9770.28569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9770contigD-dudresnayi_contig9770:4426..4957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.4351733-UTR-D-dudresnayi_contig9770:4425..44351622930933.4351733-UTR-D-dudresnayi_contig9770:4425..4435Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9770 4426..4435 +
1690557970.5309489-UTR-D-dudresnayi_contig9770:4425..44351690557970.5309489-UTR-D-dudresnayi_contig9770:4425..4435Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9770 4426..4435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.46025-CDS-D-dudresnayi_contig9770:4435..49571622930933.46025-CDS-D-dudresnayi_contig9770:4435..4957Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9770 4436..4957 +
1690557970.547424-CDS-D-dudresnayi_contig9770:4435..49571690557970.547424-CDS-D-dudresnayi_contig9770:4435..4957Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9770 4436..4957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9770.28569.1prot_D-dudresnayi_contig9770.28569.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9770 4436..4957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9770.28569.1

>prot_D-dudresnayi_contig9770.28569.1 ID=prot_D-dudresnayi_contig9770.28569.1|Name=mRNA_D-dudresnayi_contig9770.28569.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=174bp
MRSKDGKKCAEAEHACKGPPRSGTDRGTAGGRAHGGPSDSKKEIRARSEA
RNTVAVDVNTRRSPSVSRSNMDKPRQQLDRDVSSPQSVSPTKRRTSGVRR
QVPTDNSCGMRGNGGGGGCCRVDDGGTRGRSGMIPKKDIKCQGPRNISPS
IRATDGSRSRGGGGGGDVAGADEA
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mRNA from alignment at D-dudresnayi_contig9770:4426..4957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9770.28569.1 ID=mRNA_D-dudresnayi_contig9770.28569.1|Name=mRNA_D-dudresnayi_contig9770.28569.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at D-dudresnayi_contig9770:4426..4957+ (Desmarestia dudresnayi DdudBR16 monoicous)
GACGCAACGGATGAGGTCCAAGGACGGCAAGAAATGCGCGGAGGCAGAAC
ATGCCTGCAAGGGTCCGCCTAGGAGCGGTACCGATCGAGGTACTGCTGGT
GGGCGGGCACACGGTGGGCCTAGTGATTCAAAGAAGGAAATCCGTGCTCG
TTCAGAGGCGCGTAATACGGTCGCGGTCGACGTTAACACGCGGCGAAGCC
CGAGCGTCAGCAGAAGCAATATGGACAAGCCGCGGCAGCAACTCGATAGG
GATGTGTCATCCCCGCAGTCGGTGTCGCCGACGAAACGAAGAACAAGCGG
CGTACGCCGGCAAGTTCCTACCGACAATAGTTGCGGCATGCGTGGAAACG
GCGGCGGCGGTGGCTGTTGTCGCGTTGATGATGGCGGCACCCGGGGGCGT
TCCGGCATGATCCCAAAGAAGGATATTAAATGCCAGGGACCACGAAACAT
TTCTCCGTCAATACGGGCGACTGATGGTTCCCGCTCGCGAGGTGGTGGCG
GCGGCGGCGATGTCGCCGGTGCGGACGAAGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9770:4426..4957+

>mRNA_D-dudresnayi_contig9770.28569.1 ID=mRNA_D-dudresnayi_contig9770.28569.1|Name=mRNA_D-dudresnayi_contig9770.28569.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at D-dudresnayi_contig9770:4426..4957+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGGTCCAAGGACGGCAAGAAATGCGCGGAGGCAGAACATGCCTGCAA
GGGTCCGCCTAGGAGCGGTACCGATCGAGGTACTGCTGGTGGGCGGGCAC
ACGGTGGGCCTAGTGATTCAAAGAAGGAAATCCGTGCTCGTTCAGAGGCG
CGTAATACGGTCGCGGTCGACGTTAACACGCGGCGAAGCCCGAGCGTCAG
CAGAAGCAATATGGACAAGCCGCGGCAGCAACTCGATAGGGATGTGTCAT
CCCCGCAGTCGGTGTCGCCGACGAAACGAAGAACAAGCGGCGTACGCCGG
CAAGTTCCTACCGACAATAGTTGCGGCATGCGTGGAAACGGCGGCGGCGG
TGGCTGTTGTCGCGTTGATGATGGCGGCACCCGGGGGCGTTCCGGCATGA
TCCCAAAGAAGGATATTAAATGCCAGGGACCACGAAACATTTCTCCGTCA
ATACGGGCGACTGATGGTTCCCGCTCGCGAGGTGGTGGCGGCGGCGGCGA
TGTCGCCGGTGCGGACGAAGCGATGAGGTCCAAGGACGGCAAGAAATGCG
CGGAGGCAGAACATGCCTGCAAGGGTCCGCCTAGGAGCGGTACCGATCGA
GGTACTGCTGGTGGGCGGGCACACGGTGGGCCTAGTGATTCAAAGAAGGA
AATCCGTGCTCGTTCAGAGGCGCGTAATACGGTCGCGGTCGACGTTAACA
CGCGGCGAAGCCCGAGCGTCAGCAGAAGCAATATGGACAAGCCGCGGCAG
CAACTCGATAGGGATGTGTCATCCCCGCAGTCGGTGTCGCCGACGAAACG
AAGAACAAGCGGCGTACGCCGGCAAGTTCCTACCGACAATAGTTGCGGCA
TGCGTGGAAACGGCGGCGGCGGTGGCTGTTGTCGCGTTGATGATGGCGGC
ACCCGGGGGCGTTCCGGCATGATCCCAAAGAAGGATATTAAATGCCAGGG
ACCACGAAACATTTCTCCGTCAATACGGGCGACTGATGGTTCCCGCTCGC
GAGGTGGTGGCGGCGGCGGCGATGTCGCCGGTGCGGACGAAGCG
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