mRNA_D-dudresnayi_contig9763.28564.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9763.28564.1
Unique NamemRNA_D-dudresnayi_contig9763.28564.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9763.28564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9763contigD-dudresnayi_contig9763:5965..8330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D7G5T0
EggNOG OGs2E49E@1,2SB7B@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size512
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9763.28564.1prot_D-dudresnayi_contig9763.28564.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9763 5965..8330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.47465-CDS-D-dudresnayi_contig9763:5964..61801622930932.47465-CDS-D-dudresnayi_contig9763:5964..6180Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 5965..6180 +
1690557970.1761224-CDS-D-dudresnayi_contig9763:5964..61801690557970.1761224-CDS-D-dudresnayi_contig9763:5964..6180Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 5965..6180 +
1622930932.5008156-CDS-D-dudresnayi_contig9763:6831..69231622930932.5008156-CDS-D-dudresnayi_contig9763:6831..6923Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 6832..6923 +
1690557970.1859097-CDS-D-dudresnayi_contig9763:6831..69231690557970.1859097-CDS-D-dudresnayi_contig9763:6831..6923Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 6832..6923 +
1622930932.5274847-CDS-D-dudresnayi_contig9763:8128..83301622930932.5274847-CDS-D-dudresnayi_contig9763:8128..8330Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 8129..8330 +
1690557970.1940246-CDS-D-dudresnayi_contig9763:8128..83301690557970.1940246-CDS-D-dudresnayi_contig9763:8128..8330Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 8129..8330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9763.28564.1

>prot_D-dudresnayi_contig9763.28564.1 ID=prot_D-dudresnayi_contig9763.28564.1|Name=mRNA_D-dudresnayi_contig9763.28564.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=170bp
MLSQPSLASRLMFAAFDPIKRYRHLHLAVWLLSMGVMVADRLLWNVWPRQ
SFGGAFCQDDQCGEDFFCPMHQAPGCLMEGPGSVKAFDWIARVTGRVIIA
ATNLSLVTSCIGTWSWLSETERLHKLLRGWRADNDFLRAVGFWTLVVAVV
AHVYVLLLPPVFGGFGSESQ
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mRNA from alignment at D-dudresnayi_contig9763:5965..8330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9763.28564.1 ID=mRNA_D-dudresnayi_contig9763.28564.1|Name=mRNA_D-dudresnayi_contig9763.28564.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2366bp|location=Sequence derived from alignment at D-dudresnayi_contig9763:5965..8330+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTCTCGCAGCCGTCACTGGCCAGCCGATTGATGTTCGCCGCTTTTGA
TCCTATCAAACGTTACCGTCATCTGCATTTGGCCGTGTGGCTACTGTCGA
TGGGGGTGATGGTTGCAGACAGACTACTGTGGAACGTCTGGCCGCGTCAG
AGCTTTGGGGGCGCATTTTGTCAAGACGACCAGTGCGGCGAGGACTTTTT
CTGCCCCATGCATCAGGTATGTATGTGTACCTACCGTAATGTACCGTACT
GTACGCACAGTATTGAGCTCCAACGAGTGTTAAAAACCCAGAGAGAATAC
CGCATTTTTCGAGGTGGCAAAAACATATGGGCAGCATTTCGTTGGGGCAT
ATAGATTACAAAAGGATAGAAGGGATACTTCGGGAGGTTGGTATTCCCTA
TATTTTTAGGGTGTGGGTTGGGTTAGGGTTAGCATTACTGTAGTTCTATA
GTAGGAATTTTCCTGTTACCTGTTTGCGCACCCCACGGTCGTACTATTTA
GTACAATGAACGATACCCTATAAAGATTCCTTGTATCCTTGTGTTGTCCT
ACCTCTTTCGTTGTTCGCCCGGTACACAAAAGTTGCCAATGTCAGGGCGC
ACGATGACGTAGGAACCACCCACAGACATCCGTCTGTCGCGCTCGAGGTA
GTGGTGCTCGCTGCAGGTATCCATCTGGTGATATAGGTTTCCCCGTTGTC
GGGTGTAGTGCAGTACTTTGTCCATTGTTGCTCTCGTTTTCAACACCGTC
AAAGCGCTGCTTTCCTGGGTGCGCGGCCAATTGACCGCCGTGACAGGGAG
CCGTGCAAACTCTATTTTTGTAAGGTACACCTCCTGCGCTTGTTTCTATG
CATGCCGGTATTTACAGGCGCCCGGGTGCCTTATGGAAGGTCCGGGGTCA
GTGAAGGCATTCGATTGGATCGCTCGCGTGACAGGACGGGTTATCATCGC
GGCAACGAAGTGAGATCAGACGTACCAGTTATCGGAATATATTCTCAGTC
AGTCGTGGTGCATGCATGCGTTCTTAACGAGCCGGAAACCTAGTCCTCTC
TCAGTGCCCTCTGCTACATACGGTACTGACTTCTGCTATGTTTCACTGCG
GTTGTTGTCTGTGTGTGTGCTTTACATATATATACTTCGAAGTATATGTT
ATATCTTATAGAACACGGCGATGTCAGGTTCAGCCCCCCCCCCCCAACAC
TCGCCGTATGGGATCGTATACCGCTTTTTTACATCGGTCCTTCCGGCAAT
TGTCCTTCGTCGAATTAGATTACAAGAGAGTGCAAGAGAGAGCACGTGCC
AATTTCATGCGCATGTGGCTTCATCATTCCATCATACACGTATAATACCA
ATTTACTATACAAACCCCCAAATCCCAAGAAATAGTGCCTAGTGGCCGAG
TATCACAAACAAGGGGGCTGTAGACGGCGAAAAGCAAACGCCCTTCCTTC
CCAAAACCACGTACAGAAAGAAAGCGGAAAATAAATGAGCTTCGAGCTTC
GATGTTCCAAAACAGATGCGATGATGAAAGACACCATGTTACGTACCACC
AAGGGTACGTGAAGGCATACGCACTGAAACGTTTTGTTGTTGTTGTTGTT
GTTTTGCCCCGTCTCGAGGCATAATGGCATGGGGGGGCTTGAAAGTCAGC
AGGTTTATCGTAGTGTTTTTTTTTTAGGACGGATCTTTAGCGAGGTTTTG
ACTCTCTATTACTATATACAGTAGTGATTTCATTAGGGCTCGGGTTAGGG
TTAGCAATCGGGTTTATTCGAACTGCCGAACCGCCCACGTTCATACTAAG
GTTATAATAAAGCGTACATCTCAAAGATCCGAGCTACAAAAAACGCTACG
TTAAGGCGGCTCTTGCAAATAGTATATTCAGCGGGCCGTTTTAGAACCCC
ATCGGAGACGCTAAGGCTATGTGCGTGATCAGCCATGCTACTATTATAGT
AGTACGACCCGCGTGGAGTAGACACGTTATGCCATCTTGGCCGTGTCGCC
GCTACGTTGGGTTGTCAAAAAATGGTATCGTCATTGTCAAGGAACGAAAA
AACAGTTTTGGTTTCGTCCGCCAGGAGAAAGTATTACAGAGCTCGATATT
GTCACTTTATACCACAAGCCGCCCCCGCCCCCGCCCCCGCCCTCGCCTCT
TTCGAACCATTCAGCCTCAGTTTGGTGACCTCCTGTATCGGCACATGGTC
CTGGTTGTCGGAGACGGAACGCCTCCATAAGCTTCTGCGGGGATGGAGGG
CGGACAACGATTTCCTGCGAGCCGTGGGGTTTTGGACCTTGGTGGTGGCG
GTGGTGGCGCACGTGTACGTTCTGCTGCTCCCGCCAGTGTTCGGCGGTTT
CGGAAGCGAGTCTCAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9763:5965..8330+

>mRNA_D-dudresnayi_contig9763.28564.1 ID=mRNA_D-dudresnayi_contig9763.28564.1|Name=mRNA_D-dudresnayi_contig9763.28564.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at D-dudresnayi_contig9763:5965..8330+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTCTCGCAGCCGTCACTGGCCAGCCGATTGATGTTCGCCGCTTTTGA
TCCTATCAAACGTTACCGTCATCTGCATTTGGCCGTGTGGCTACTGTCGA
TGGGGGTGATGGTTGCAGACAGACTACTGTGGAACGTCTGGCCGCGTCAG
AGCTTTGGGGGCGCATTTTGTCAAGACGACCAGTGCGGCGAGGACTTTTT
CTGCCCCATGCATCAGATGCTCTCGCAGCCGTCACTGGCCAGCCGATTGA
TGTTCGCCGCTTTTGATCCTATCAAACGTTACCGTCATCTGCATTTGGCC
GTGTGGCTACTGTCGATGGGGGTGATGGTTGCAGACAGACTACTGTGGAA
CGTCTGGCCGCGTCAGAGCTTTGGGGGCGCATTTTGTCAAGACGACCAGT
GCGGCGAGGACTTTTTCTGCCCCATGCATCAGGCGCCCGGGTGCCTTATG
GAAGGTCCGGGGTCAGTGAAGGCATTCGATTGGATCGCTCGCGTGACAGG
ACGGGTTATCATCGCGGCAACGAAGCGCCCGGGTGCCTTATGGAAGGTCC
GGGGTCAGTGAAGGCATTCGATTGGATCGCTCGCGTGACAGGACGGGTTA
TCATCGCGGCAACGAACCTCAGTTTGGTGACCTCCTGTATCGGCACATGG
TCCTGGTTGTCGGAGACGGAACGCCTCCATAAGCTTCTGCGGGGATGGAG
GGCGGACAACGATTTCCTGCGAGCCGTGGGGTTTTGGACCTTGGTGGTGG
CGGTGGTGGCGCACGTGTACGTTCTGCTGCTCCCGCCAGTGTTCGGCGGT
TTCGGAAGCGAGTCTCAACCTCAGTTTGGTGACCTCCTGTATCGGCACAT
GGTCCTGGTTGTCGGAGACGGAACGCCTCCATAAGCTTCTGCGGGGATGG
AGGGCGGACAACGATTTCCTGCGAGCCGTGGGGTTTTGGACCTTGGTGGT
GGCGGTGGTGGCGCACGTGTACGTTCTGCTGCTCCCGCCAGTGTTCGGCG
GTTTCGGAAGCGAGTCTCAA
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