mRNA_D-dudresnayi_contig976.28556.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig976.28556.1
Unique NamemRNA_D-dudresnayi_contig976.28556.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig976.28556.1 vs. uniprot
Match: A0A1S3TX37_VIGRR (alpha-soluble NSF attachment protein 2 isoform X1 n=11 Tax=Vigna TaxID=3913 RepID=A0A1S3TX37_VIGRR)

HSP 1 Score: 54.7 bits (130), Expect = 4.220e-5
Identity = 55/247 (22.27%), Postives = 113/247 (45.75%), Query Frame = 1 
Query:   31 NKYRMSNRHLDSARCIERIIVIKNSLHNDIKDNLDQLFQTYKYVDDPRKFDVYEQLIGIHLLKGNHRQYNSLLLEVAKSYQKSNELDLAIETLNRCSSLHSL------ILDALVLKAEIAIRKGDHKYAHEMYKEVYTKHSSSRYGNIINQKYIYKSLLC-VIAYDHIMVLNEARNVDEINPTFFTSIDGRFIKDISKAYDEYDVESFEALCREKYRIKPLDQEDVTLLIKIKEELVKFSNDEVDLA 750
            NK+   N +++ ARC +     K SL   +       F   K V       +YE+L G H++   + +      E+    + + ++D A     R + L  +      ++   +  A+  ++   ++ A ++Y+++  +  +S       + ++  S LC ++  D + + N      +++PTF T+ + +F+ D++ + DE DVE F  + +E   I PL+    TLL+++K  L +    E DL 
Sbjct:  101 NKHDAVNAYIEGARCYK-----KTSLQGAV-------FCLNKVV------TIYEEL-GRHIMAAKYSK------EIGDLCELNKDIDCARLHYERAAELFEIGDAATSVIQCKLKVAQFFVQLQQYQKAIKIYEDIARQSLNSNLLKYGVRVHLLNSGLCQLVKGDFVAISNSLELYQDLDPTFSTTREYKFLADLAASIDEEDVEKFTKVVKEFNDITPLEPWKSTLLLRVKHVLKEKEMQEDDLT 322
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig976.28556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1S3TX37_VIGRR4.220e-522.27alpha-soluble NSF attachment protein 2 isoform X1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig976contigD-dudresnayi_contig976:28643..29395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.6
Seed ortholog evalue5.6e-13
Seed eggNOG ortholog4929.XP_001482279.1
Preferred nameSEC17
KEGG koko:K15296
KEGG Pathwayko04138,ko04721,map04138,map04721
GOsGO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001671,GO:0003674,GO:0005483,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0019905,GO:0022411,GO:0030234,GO:0031090,GO:0031201,GO:0032781,GO:0032984,GO:0032991,GO:0033036,GO:0034613,GO:0035494,GO:0042144,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0043624,GO:0043933,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048280,GO:0048284,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060590,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097576,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098852
EggNOG free text desc.Soluble NSF attachment protein, SNAP
EggNOG OGs38GSG@33154,3NWP2@4751,3QPNW@4890,3RTE5@4891,47BRP@766764,KOG1586@1,KOG1586@2759
COG Functional cat.U
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size753
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.7952375-CDS-D-dudresnayi_contig976:28642..293951622930931.7952375-CDS-D-dudresnayi_contig976:28642..29395Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 28643..29395 -
1690557970.0246913-CDS-D-dudresnayi_contig976:28642..293951690557970.0246913-CDS-D-dudresnayi_contig976:28642..29395Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 28643..29395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig976.28556.1prot_D-dudresnayi_contig976.28556.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig976 28643..29395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig976.28556.1

>prot_D-dudresnayi_contig976.28556.1 ID=prot_D-dudresnayi_contig976.28556.1|Name=mRNA_D-dudresnayi_contig976.28556.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=251bp
KAIELLNIASNKYRMSNRHLDSARCIERIIVIKNSLHNDIKDNLDQLFQT
YKYVDDPRKFDVYEQLIGIHLLKGNHRQYNSLLLEVAKSYQKSNELDLAI
ETLNRCSSLHSLILDALVLKAEIAIRKGDHKYAHEMYKEVYTKHSSSRYG
NIINQKYIYKSLLCVIAYDHIMVLNEARNVDEINPTFFTSIDGRFIKDIS
KAYDEYDVESFEALCREKYRIKPLDQEDVTLLIKIKEELVKFSNDEVDLA
*
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mRNA from alignment at D-dudresnayi_contig976:28643..29395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig976.28556.1 ID=mRNA_D-dudresnayi_contig976.28556.1|Name=mRNA_D-dudresnayi_contig976.28556.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at D-dudresnayi_contig976:28643..29395- (Desmarestia dudresnayi DdudBR16 monoicous)
AAAGCAATAGAGTTGTTAAACATTGCGTCGAATAAGTATAGAATGTCGAA
CAGACACTTAGACAGTGCGAGGTGTATAGAGCGTATCATAGTTATTAAAA
ATAGCTTACACAATGACATCAAAGACAACCTTGATCAGTTGTTCCAAACT
TATAAATACGTCGATGATCCTAGAAAGTTTGATGTGTATGAACAATTAAT
TGGTATTCATTTACTAAAAGGTAATCATCGCCAATACAACTCGCTATTGT
TGGAAGTAGCAAAATCATACCAGAAGAGCAATGAATTGGACTTGGCAATT
GAAACTTTAAATCGATGCAGTTCATTGCATTCTTTGATACTGGATGCACT
AGTACTAAAAGCGGAAATAGCAATCAGAAAAGGAGATCATAAATATGCCC
ACGAAATGTATAAGGAAGTGTATACAAAGCATTCGTCGTCAAGGTATGGC
AACATTATCAATCAAAAGTACATATACAAGAGTTTACTTTGTGTTATTGC
ATATGATCATATCATGGTTTTAAATGAAGCCAGAAATGTAGATGAAATTA
ATCCAACCTTTTTCACTTCAATAGATGGAAGGTTTATTAAAGACATAAGT
AAAGCATATGATGAGTATGATGTGGAATCCTTTGAAGCATTATGTCGAGA
AAAGTACAGAATCAAACCGCTCGACCAGGAAGATGTTACGCTATTGATTA
AAATTAAAGAGGAATTAGTTAAATTTTCTAATGATGAAGTTGATCTGGCC
TAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig976:28643..29395-

>mRNA_D-dudresnayi_contig976.28556.1 ID=mRNA_D-dudresnayi_contig976.28556.1|Name=mRNA_D-dudresnayi_contig976.28556.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at D-dudresnayi_contig976:28643..29395- (Desmarestia dudresnayi DdudBR16 monoicous)
AAAGCAATAGAGTTGTTAAACATTGCGTCGAATAAGTATAGAATGTCGAA
CAGACACTTAGACAGTGCGAGGTGTATAGAGCGTATCATAGTTATTAAAA
ATAGCTTACACAATGACATCAAAGACAACCTTGATCAGTTGTTCCAAACT
TATAAATACGTCGATGATCCTAGAAAGTTTGATGTGTATGAACAATTAAT
TGGTATTCATTTACTAAAAGGTAATCATCGCCAATACAACTCGCTATTGT
TGGAAGTAGCAAAATCATACCAGAAGAGCAATGAATTGGACTTGGCAATT
GAAACTTTAAATCGATGCAGTTCATTGCATTCTTTGATACTGGATGCACT
AGTACTAAAAGCGGAAATAGCAATCAGAAAAGGAGATCATAAATATGCCC
ACGAAATGTATAAGGAAGTGTATACAAAGCATTCGTCGTCAAGGTATGGC
AACATTATCAATCAAAAGTACATATACAAGAGTTTACTTTGTGTTATTGC
ATATGATCATATCATGGTTTTAAATGAAGCCAGAAATGTAGATGAAATTA
ATCCAACCTTTTTCACTTCAATAGATGGAAGGTTTATTAAAGACATAAGT
AAAGCATATGATGAGTATGATGTGGAATCCTTTGAAGCATTATGTCGAGA
AAAGTACAGAATCAAACCGCTCGACCAGGAAGATGTTACGCTATTGATTA
AAATTAAAGAGGAATTAGTTAAATTTTCTAATGATGAAGTTGATCTGGCC
TAAAAAGCAATAGAGTTGTTAAACATTGCGTCGAATAAGTATAGAATGTC
GAACAGACACTTAGACAGTGCGAGGTGTATAGAGCGTATCATAGTTATTA
AAAATAGCTTACACAATGACATCAAAGACAACCTTGATCAGTTGTTCCAA
ACTTATAAATACGTCGATGATCCTAGAAAGTTTGATGTGTATGAACAATT
AATTGGTATTCATTTACTAAAAGGTAATCATCGCCAATACAACTCGCTAT
TGTTGGAAGTAGCAAAATCATACCAGAAGAGCAATGAATTGGACTTGGCA
ATTGAAACTTTAAATCGATGCAGTTCATTGCATTCTTTGATACTGGATGC
ACTAGTACTAAAAGCGGAAATAGCAATCAGAAAAGGAGATCATAAATATG
CCCACGAAATGTATAAGGAAGTGTATACAAAGCATTCGTCGTCAAGGTAT
GGCAACATTATCAATCAAAAGTACATATACAAGAGTTTACTTTGTGTTAT
TGCATATGATCATATCATGGTTTTAAATGAAGCCAGAAATGTAGATGAAA
TTAATCCAACCTTTTTCACTTCAATAGATGGAAGGTTTATTAAAGACATA
AGTAAAGCATATGATGAGTATGATGTGGAATCCTTTGAAGCATTATGTCG
AGAAAAGTACAGAATCAAACCGCTCGACCAGGAAGATGTTACGCTATTGA
TTAAAATTAAAGAGGAATTAGTTAAATTTTCTAATGATGAAGTTGATCTG
GCCTAA
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