mRNA_D-dudresnayi_contig976.28554.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig976.28554.1
Unique NamemRNA_D-dudresnayi_contig976.28554.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig976.28554.1 vs. uniprot
Match: A0A258HVC3_9BURK (Uncharacterized protein n=1 Tax=Comamonadaceae bacterium 32-67-11 TaxID=1970505 RepID=A0A258HVC3_9BURK)

HSP 1 Score: 179 bits (455), Expect = 4.920e-56
Identity = 89/127 (70.08%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 MSTIKLKTKHVKPHFALMLKQEQKNLVDYILDELKGLSVKNLKLDPEFLKYLAEIIENQVKKKATDSTETKPSKMYIMVEILKRLFPHVTDGEIDACKGIVEFLLKQKLIKKVGLTKIVKFYLKTTF 381
            MSTIKLKTK VK HF L++KQEQKNLVDYILDELKG+ +  L+LDP+FLKYLAE+IENQV KK+T+S E+KPSKM IM+E++KRLFPH+T+ E++A +GIV FL+  KLIKKV L+KI+KFYLK  F
Sbjct:    1 MSTIKLKTKLVKSHFTLVMKQEQKNLVDYILDELKGVDLDKLQLDPDFLKYLAELIENQVSKKSTESAESKPSKMDIMIEVIKRLFPHITETELEASRGIVNFLVSNKLIKKVALSKIMKFYLKQKF 127
[Close]
BLAST of mRNA_D-dudresnayi_contig976.28554.1 vs. uniprot
Match: A0A519UKA6_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519UKA6_9SPHI)

HSP 1 Score: 164 bits (416), Expect = 4.840e-50
Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:    1 MSTIKLKTKHVKPHFALMLKQEQKNLVDYILDELKGLSVKNLKLDPEFLKYLAEIIENQVKKKATDSTET-KPSKMYIMVEILKRLFPHVTDGEIDACKGIVEFLLKQKLIKKVGLTKIVKFYLKTTFALE 390
            MS IKL  K VKP F L++KQE KNLVDYILDELKGL +  LKLDP+FLKYLAEIIENQVK+   D  +T KP+KM I+++++KRLFPH ++ EIDACKGIVEFLLK  LIKK  L+KI+ FYLK  F + 
Sbjct:    1 MSAIKLGAKLVKPSFHLVMKQEHKNLVDYILDELKGLDISQLKLDPDFLKYLAEIIENQVKQPKGDGDKTCKPNKMDILIDVVKRLFPHASEMEIDACKGIVEFLLKNTLIKKTSLSKIMSFYLKKKFCMR 131
[Close]
BLAST of mRNA_D-dudresnayi_contig976.28554.1 vs. uniprot
Match: A0A519SDU6_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SDU6_FLASP)

HSP 1 Score: 157 bits (397), Expect = 3.430e-47
Identity = 81/127 (63.78%), Postives = 97/127 (76.38%), Query Frame = 1 
Query:    1 MSTIKLKTKHVKPHFALMLKQEQKNLVDYILDELKGLSVKNLKLDPEFLKYLAEIIENQVKKKATDSTETKPSKMYIMVEILKRLFPHVTDGEIDACKGIVEFLLKQKLIKKVGLTKIVKFYLKTTF 381
            MS I L  K VKP F L++KQEQKNLV+YILDELK L V NLKLDP FLKYLAEIIENQVK        TKP+KM I++E+++R+FPH ++ E+ ACKGIVEFLLK  L+KK  L+KI+ FYLK  F
Sbjct:    1 MSAINLGAKLVKPSFHLVMKQEQKNLVNYILDELKELDVSNLKLDPGFLKYLAEIIENQVKSSKDGDKSTKPNKMDILIEVVRRVFPHSSEEEVQACKGIVEFLLKNALVKKTSLSKIMSFYLKKRF 127
[Close]
BLAST of mRNA_D-dudresnayi_contig976.28554.1 vs. uniprot
Match: A0A519SWL2_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SWL2_FLASP)

HSP 1 Score: 154 bits (390), Expect = 3.630e-46
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:    1 MSTIKLKTKHVKPHFALMLKQEQKNLVDYILDELKGLSVKNLKLDPEFLKYLAEIIENQVKKKATDSTETKPSKMYIMVEILKRLFPHVTDGEIDACKGIVEFLLKQKLIKKVGLTKIVKFYLKTTF 381
            MS IKL+   VKPHF+L  KQE KN+VD+ILDELK L + +LKLDP+FLKYLAE+IENQV K   DS   KP KM IMVE+L++LFPH+ D +I+ CKGI+E+LLK  ++KKV L+K++ FYLK  F
Sbjct:    1 MSAIKLRASLVKPHFSLKQKQETKNVVDFILDELKHLDISSLKLDPDFLKYLAEVIENQVSKPKDDSD--KPDKMGIMVELLRKLFPHIADEQIEQCKGIIEYLLKNDMVKKVKLSKVLAFYLKKKF 125
[Close]
BLAST of mRNA_D-dudresnayi_contig976.28554.1 vs. uniprot
Match: A0A520CLK8_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A520CLK8_9SPHI)

HSP 1 Score: 127 bits (319), Expect = 2.780e-35
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   91 LDELKGLSVKNLKLDPEFLKYLAEIIENQVKKKATDSTETKPSKMYIMVEILKRLFPHVTDGEIDACKGIVEFLLKQKLIKKVGLTKIVKFYLK 372
            LDELKGL V NLKLDP+FLKYLAEIIENQVK K  D + TKP+KM I+V+++KRLFPH  + EI+ CKGIVEFLLK  LI+K  L+KI+ FYLK
Sbjct:    5 LDELKGLDVSNLKLDPDFLKYLAEIIENQVKSKDGDKS-TKPNKMDILVDVVKRLFPHADEHEIEVCKGIVEFLLKNTLIRKTSLSKIMSFYLK 97
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig976.28554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A258HVC3_9BURK4.920e-5670.08Uncharacterized protein n=1 Tax=Comamonadaceae bac... [more]
A0A519UKA6_9SPHI4.840e-5065.65Uncharacterized protein n=1 Tax=Pedobacter sp. Tax... [more]
A0A519SDU6_FLASP3.430e-4763.78Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
A0A519SWL2_FLASP3.630e-4661.42Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
A0A520CLK8_9SPHI2.780e-3569.15Uncharacterized protein n=1 Tax=Pedobacter sp. Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig976contigD-dudresnayi_contig976:23149..23541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.7102458-CDS-D-dudresnayi_contig976:23148..235411622930931.7102458-CDS-D-dudresnayi_contig976:23148..23541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 23149..23541 -
1690557970.001519-CDS-D-dudresnayi_contig976:23148..235411690557970.001519-CDS-D-dudresnayi_contig976:23148..23541Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 23149..23541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig976.28554.1prot_D-dudresnayi_contig976.28554.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig976 23149..23541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig976.28554.1

>prot_D-dudresnayi_contig976.28554.1 ID=prot_D-dudresnayi_contig976.28554.1|Name=mRNA_D-dudresnayi_contig976.28554.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=131bp
MSTIKLKTKHVKPHFALMLKQEQKNLVDYILDELKGLSVKNLKLDPEFLK
YLAEIIENQVKKKATDSTETKPSKMYIMVEILKRLFPHVTDGEIDACKGI
VEFLLKQKLIKKVGLTKIVKFYLKTTFALE*
back to top

mRNA from alignment at D-dudresnayi_contig976:23149..23541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig976.28554.1 ID=mRNA_D-dudresnayi_contig976.28554.1|Name=mRNA_D-dudresnayi_contig976.28554.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at D-dudresnayi_contig976:23149..23541- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCCACAATTAAGTTGAAGACGAAACACGTCAAGCCTCATTTTGCACT
GATGCTCAAGCAAGAGCAGAAGAATCTAGTCGATTATATCCTGGATGAGC
TGAAGGGGTTGTCTGTGAAGAATTTGAAGCTGGACCCCGAGTTCTTGAAG
TACCTGGCCGAGATCATCGAGAATCAAGTCAAGAAGAAAGCCACTGATTC
CACGGAGACCAAGCCAAGTAAGATGTATATCATGGTAGAGATTCTCAAGC
GCCTATTTCCTCATGTCACAGATGGAGAGATCGATGCGTGCAAAGGAATC
GTGGAGTTCCTGCTCAAACAAAAATTGATCAAGAAAGTTGGGCTCACTAA
GATTGTCAAGTTCTACCTGAAAACAACGTTCGCTCTGGAGTAA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig976:23149..23541-

>mRNA_D-dudresnayi_contig976.28554.1 ID=mRNA_D-dudresnayi_contig976.28554.1|Name=mRNA_D-dudresnayi_contig976.28554.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at D-dudresnayi_contig976:23149..23541- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCCACAATTAAGTTGAAGACGAAACACGTCAAGCCTCATTTTGCACT
GATGCTCAAGCAAGAGCAGAAGAATCTAGTCGATTATATCCTGGATGAGC
TGAAGGGGTTGTCTGTGAAGAATTTGAAGCTGGACCCCGAGTTCTTGAAG
TACCTGGCCGAGATCATCGAGAATCAAGTCAAGAAGAAAGCCACTGATTC
CACGGAGACCAAGCCAAGTAAGATGTATATCATGGTAGAGATTCTCAAGC
GCCTATTTCCTCATGTCACAGATGGAGAGATCGATGCGTGCAAAGGAATC
GTGGAGTTCCTGCTCAAACAAAAATTGATCAAGAAAGTTGGGCTCACTAA
GATTGTCAAGTTCTACCTGAAAACAACGTTCGCTCTGGAGTAAATGTCCA
CAATTAAGTTGAAGACGAAACACGTCAAGCCTCATTTTGCACTGATGCTC
AAGCAAGAGCAGAAGAATCTAGTCGATTATATCCTGGATGAGCTGAAGGG
GTTGTCTGTGAAGAATTTGAAGCTGGACCCCGAGTTCTTGAAGTACCTGG
CCGAGATCATCGAGAATCAAGTCAAGAAGAAAGCCACTGATTCCACGGAG
ACCAAGCCAAGTAAGATGTATATCATGGTAGAGATTCTCAAGCGCCTATT
TCCTCATGTCACAGATGGAGAGATCGATGCGTGCAAAGGAATCGTGGAGT
TCCTGCTCAAACAAAAATTGATCAAGAAAGTTGGGCTCACTAAGATTGTC
AAGTTCTACCTGAAAACAACGTTCGCTCTGGAGTAA
back to top