mRNA_D-dudresnayi_contig976.28553.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig976.28553.1
Unique NamemRNA_D-dudresnayi_contig976.28553.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A519SWF1_FLASP (Transposase n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SWF1_FLASP)

HSP 1 Score: 131 bits (329), Expect = 1.100e-34
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 KQKYNNCITAVVPEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            K +YN  I  VVPE ++NYMSDL+E+P T +  K+LL VVDLA N+ DIEPLK+K  + TL+GFK I+KR IL LPEISLKTD G+EF+GVFN +L D  I HK +
Sbjct:   30 KVRYNKFIDGVVPEPNWNYMSDLIELPKTEEKNKYLLVVVDLATNKFDIEPLKSKTAEATLNGFKEIIKRKILTLPEISLKTDNGTEFRGVFNTFLLDHKIFHKVS 135          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A6A5AA61_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA61_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.840e-28
Identity = 49/94 (52.13%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   37 PEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            P + +NYM+D++ +PTT + +K+LLT++D+  N +D EP++NK+ KT LD  K I KRGIL  PE S++TDGGSEFK VF+KYL D  I+H+ +
Sbjct:   37 PMSGYNYMADVLFLPTTKRKYKYLLTMIDIWSNNIDFEPIRNKQAKTVLDAMKVIFKRGILPKPEASIRTDGGSEFKEVFHKYLHDESILHRVS 130          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A6A4ZAB4_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAB4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.740e-26
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   37 PEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            P + +NYM+D++ +PTT + +K+LLT++D+  N +D EP+KNK+  T LD  K I KRGI+  P+ S++TDGG EFK VF+KYL D  I+H+ +
Sbjct:   37 PMSGYNYMADVLYLPTTKRKYKYLLTMIDIWSNNIDFEPIKNKQANTVLDAMKVIFKRGIMPKPQASIRTDGGGEFKEVFHKYLHDESILHRVS 130          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A519RGR1_FLASP (Transposase n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519RGR1_FLASP)

HSP 1 Score: 101 bits (251), Expect = 1.190e-23
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   46 DFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            D+N M+DL  +PT   GFK+L  +VDLA +E DIEP+K+K+  T L   ++   R  +K P+ SLKTDGG EFKGVF+K+L D  I+HKTA
Sbjct:   39 DWNMMADLFFLPTAKFGFKYLFVIVDLATDEFDIEPIKDKRPSTVLKAMEKCFARDFVKEPKYSLKTDGGLEFKGVFHKWLYDESILHKTA 129          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A519S580_FLASP (Integrase catalytic domain-containing protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519S580_FLASP)

HSP 1 Score: 100 bits (248), Expect = 3.270e-23
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   46 DFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            D+N M+DL  +PT   GFK+L  +VDLA +E D EP+KNK+  T L   ++   R  +K P+ SLKTDGG+EFKGVF+K+L D  I+HK A
Sbjct:   39 DWNMMADLFFLPTAKFGFKYLFVIVDLATDEFDFEPIKNKQPNTILKAMEKCFTRDFVKEPKYSLKTDGGNEFKGVFHKWLYDESILHKVA 129          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A6A5AJW9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AJW9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.490e-23
Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   37 PEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            P + +NYM+D++ +PTT + FK++LT++D+  N +D EP++NKK KT LD  K    R ++  P  S++TDGGSEFK  F+K++ D  I+H+ +
Sbjct:   38 PMSGYNYMADVLYLPTTKRKFKYILTMIDIWSNNIDFEPIRNKKAKTVLDAMKVTFNRKLMPKPRASIRTDGGSEFKEGFHKFVYDESILHRVS 131          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A4Q5T0P3_9BACT (Integrase catalytic domain-containing protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q5T0P3_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 8.460e-15
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 QKYNNCITAVVPEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYL 288
            +KYN     +    D  +M+DL+ MP T +G+++LLTV D+A  + D+EPLK+K++K     F +I+ R  L  P   L TDGG+EFK  F+ Y+
Sbjct:   24 KKYNKISENMGYLEDSVFMADLITMPKTKQGYRYLLTVCDIATKDFDMEPLKSKESKDVKTAFMKILTRPYLDHP-YDLITDGGTEFKSDFHNYV 117          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A519QJT3_FLASP (Transposase n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519QJT3_FLASP)

HSP 1 Score: 71.6 bits (174), Expect = 4.160e-13
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    4 QKYNNCITAVVPEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRGIMHKTA 318
            +KYN     +    D  +M DL+ MP T +G+++LLTV D+A  + D+EPLK+K++K     F +I  R  L  P   L TDGG+E K  F+ Y+    I H+T+
Sbjct:   21 KKYNKISENMGYLEDSVFMVDLLTMPKTKQGYRFLLTVCDIATKDFDMEPLKSKESKDVKIAFMKISTRPYLDHP-YELITDGGTESKSDFHDYVTKLKIYHRTS 124          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A483ADS4_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A483ADS4_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 5.750e-7
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   31 VVPEADFNYMSDLVEMPTTS---KGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKG-VFNKYLKDRGI 303
            VV   D  + +DLV++   S   KGFK+LLT +D+      + PLK+K  KT  D F+ I K G  + P I L+TD G+EF   VF K+LK+  +
Sbjct:   56 VVYGIDHQWQADLVDLAKLSSYNKGFKYLLTCIDVLSRYAWVVPLKDKTGKTLKDAFQVIFKSG--RRP-IRLQTDKGTEFTNRVFQKFLKEHDV 147          
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Match: A0A7Z0MNB8_9GAMM (Transposase family protein n=1 Tax=Candidatus Methanofishera endochildressiae TaxID=2738884 RepID=A0A7Z0MNB8_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 6.780e-7
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   64 DLVEMPTTSKGFKWLLTVVDLAINEMDIEPLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKG-VFNKYLKDRGI 303
            DL ++ + +KGFK+LLT +D+      + PLK+K  KT  D F+ I K G  + P I L+TD G+EF   VF K+LK+  +
Sbjct:    2 DLAKLSSYNKGFKYLLTCIDVLSRYAWVVPLKDKTGKTLKDAFQVIFKSG--RRP-IRLQTDKGTEFTNRVFQKFLKEHDV 79          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig976.28553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A519SWF1_FLASP1.100e-3460.38Transposase n=1 Tax=Flavobacterium sp. TaxID=239 R... [more]
A0A6A5AA61_9STRA6.840e-2852.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4ZAB4_9STRA4.740e-2648.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A519RGR1_FLASP1.190e-2352.75Transposase n=1 Tax=Flavobacterium sp. TaxID=239 R... [more]
A0A519S580_FLASP3.270e-2351.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A5AJW9_9STRA3.490e-2343.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Q5T0P3_9BACT8.460e-1541.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A519QJT3_FLASP4.160e-1339.05Transposase n=1 Tax=Flavobacterium sp. TaxID=239 R... [more]
A0A483ADS4_9GAMM5.750e-741.05Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A7Z0MNB8_9GAMM6.780e-741.98Transposase family protein n=1 Tax=Candidatus Meth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig976contigD-dudresnayi_contig976:15853..16173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.6572971-CDS-D-dudresnayi_contig976:15852..161731622930931.6572971-CDS-D-dudresnayi_contig976:15852..16173Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 15853..16173 -
1690557969.9924839-CDS-D-dudresnayi_contig976:15852..161731690557969.9924839-CDS-D-dudresnayi_contig976:15852..16173Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 15853..16173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig976.28553.1prot_D-dudresnayi_contig976.28553.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig976 15853..16173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig976.28553.1

>prot_D-dudresnayi_contig976.28553.1 ID=prot_D-dudresnayi_contig976.28553.1|Name=mRNA_D-dudresnayi_contig976.28553.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=107bp
KQKYNNCITAVVPEADFNYMSDLVEMPTTSKGFKWLLTVVDLAINEMDIE
PLKNKKTKTTLDGFKRIVKRGILKLPEISLKTDGGSEFKGVFNKYLKDRG
IMHKTAK
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mRNA from alignment at D-dudresnayi_contig976:15853..16173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig976.28553.1 ID=mRNA_D-dudresnayi_contig976.28553.1|Name=mRNA_D-dudresnayi_contig976.28553.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at D-dudresnayi_contig976:15853..16173- (Desmarestia dudresnayi DdudBR16 monoicous)
AAGCAGAAATACAATAATTGCATTACAGCCGTAGTACCCGAGGCAGATTT CAATTACATGTCCGATCTAGTTGAAATGCCAACCACTAGCAAGGGCTTCA AATGGCTACTCACAGTTGTAGATCTTGCTATTAATGAAATGGATATCGAG CCATTAAAGAATAAAAAAACCAAAACCACTCTTGATGGCTTTAAAAGAAT TGTGAAGCGCGGGATATTAAAACTCCCGGAGATCTCACTCAAAACAGACG GTGGAAGTGAATTCAAGGGGGTGTTCAACAAATACTTGAAAGATCGAGGG ATAATGCATAAAACCGCGAAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig976:15853..16173-

>mRNA_D-dudresnayi_contig976.28553.1 ID=mRNA_D-dudresnayi_contig976.28553.1|Name=mRNA_D-dudresnayi_contig976.28553.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at D-dudresnayi_contig976:15853..16173- (Desmarestia dudresnayi DdudBR16 monoicous)
AAGCAGAAATACAATAATTGCATTACAGCCGTAGTACCCGAGGCAGATTT
CAATTACATGTCCGATCTAGTTGAAATGCCAACCACTAGCAAGGGCTTCA
AATGGCTACTCACAGTTGTAGATCTTGCTATTAATGAAATGGATATCGAG
CCATTAAAGAATAAAAAAACCAAAACCACTCTTGATGGCTTTAAAAGAAT
TGTGAAGCGCGGGATATTAAAACTCCCGGAGATCTCACTCAAAACAGACG
GTGGAAGTGAATTCAAGGGGGTGTTCAACAAATACTTGAAAGATCGAGGG
ATAATGCATAAAACCGCGAAAAAGCAGAAATACAATAATTGCATTACAGC
CGTAGTACCCGAGGCAGATTTCAATTACATGTCCGATCTAGTTGAAATGC
CAACCACTAGCAAGGGCTTCAAATGGCTACTCACAGTTGTAGATCTTGCT
ATTAATGAAATGGATATCGAGCCATTAAAGAATAAAAAAACCAAAACCAC
TCTTGATGGCTTTAAAAGAATTGTGAAGCGCGGGATATTAAAACTCCCGG
AGATCTCACTCAAAACAGACGGTGGAAGTGAATTCAAGGGGGTGTTCAAC
AAATACTTGAAAGATCGAGGGATAATGCATAAAACCGCGAAA
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