mRNA_D-dudresnayi_contig976.28552.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig976.28552.1
Unique NamemRNA_D-dudresnayi_contig976.28552.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig976.28552.1 vs. uniprot
Match: A0A519SQX0_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SQX0_FLASP)

HSP 1 Score: 331 bits (849), Expect = 5.580e-111
Identity = 154/272 (56.62%), Postives = 226/272 (83.09%), Query Frame = 1 
Query:    1 LIGSNKIRNILYSNDYDLNADVGVTDSVTVLHNIYKEFLSMFKKAHASPDYYILDFKCGTYEGESIRWTYQDMIRGNVRRGTK-AITFEECLLMEDNTIKLDLCFLYNDIFTDINCLYNLFIVKNKEELKKMKAEEEKKAGKSLREEITELEQNKEYFKALKRYFSLGMIEGKIDQDVLDLLNSDYGIMYKFINFLKLVIEMIEPDFKPVKIEVVQGNLEYIKQFASHITSMNIENYLNRLIKVIKMNSIKKMKAALEKLVNDMSDSLNKEI 813
            LIGSN IRN+LY+NDYDLN+++GV D++ VL +++KEF+ +F  A+ +P+YYILDFKCG Y  E IRW+Y++     ++RGTK  ++FEECLL +DN IKLDLC+++N++FTDINC+YNLFIV NK+EL+K KA    K  + L+EEITELE+ KEY+KA+KRYFSL ++EGK+D+D+L ++NSDYG+ YKFI+FLKLV+E+++ DFKP+K+ +++ NLEYIKQFASHIT++ ++ YL+RL+++I + + +K+K++L++L+ D  D LN+EI
Sbjct:   30 LIGSNSIRNMLYANDYDLNSNIGVDDTIPVLRDLHKEFIHIFNVAYRNPNYYILDFKCGVYNDEPIRWSYEE-----IKRGTKHGVSFEECLLHDDNIIKLDLCYIHNNLFTDINCVYNLFIVSNKKELEKEKAIAMTKVKERLKEEITELEKEKEYYKAMKRYFSLSIVEGKMDEDILHIMNSDYGMFYKFISFLKLVVELLDQDFKPIKLSLIKLNLEYIKQFASHITTVKVDKYLDRLVRIIDLPNKQKVKSSLDRLIQDAGDDLNREI 296
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BLAST of mRNA_D-dudresnayi_contig976.28552.1 vs. uniprot
Match: A0A519SEA7_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SEA7_FLASP)

HSP 1 Score: 176 bits (445), Expect = 1.160e-51
Identity = 89/179 (49.72%), Postives = 130/179 (72.63%), Query Frame = 1 
Query:   31 LYSNDYDLNADVGVTDSVTVLHNIYKEFLSMFKKAHASPDYYILDFKCGTYEGESIRWTYQDMIRGNVRRGTK-AITFEECLLMEDNTIKLDLCFLYNDIFTDINCLYNLFIVKNKEELKKMKAEEEKKAGKSLREEITELEQNKEYFKALKRYFSLGMIEGKIDQDVLDLLNSDYGIM 564
            +++NDYDLN+++G+  ++ VL  + KEF+ +F  A+ +P+ YIL    G Y  E IRW+Y     G++ RG K  ++FEECLL +DN IKLDLC+ +N++FTDINC  NLFIV NK+ L+  KA    K  + L+EEITELE+ KEY+ A+KRYFSL ++EGK+D ++L ++NSDYG++
Sbjct:    1 MHANDYDLNSNIGIDGTIPVLRGLPKEFIHIFDVAYKNPNNYIL----GVYNDEPIRWSY-----GDINRGAKHGVSFEECLLYDDNIIKLDLCYFHNNLFTDINCPCNLFIVNNKKGLETEKALAMTKIKERLKEEITELEKGKEYYNAMKRYFSLSIVEGKMDDNILHIMNSDYGML 170
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BLAST of mRNA_D-dudresnayi_contig976.28552.1 vs. uniprot
Match: A0A4Q5TAF5_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q5TAF5_9BACT)

HSP 1 Score: 160 bits (405), Expect = 7.950e-46
Identity = 77/157 (49.04%), Postives = 111/157 (70.70%), Query Frame = 1 
Query:   28 ILYSNDYDLNADVGVTDSVTVLHNIYKEFLSMFKKAHASPDYYILDFKCGTYEGESIRWTYQDMIRGNVRRGTKAITFEECLLM---EDNTIKLDLCFLYNDIFTDINCLYNLFIVKNKEELKKMKAEEEKKAGKSLREEITELEQNKEYFKALKRY 489
            +LY+NDYDLNA++ ++ +V VLH +Y EFL +F KA+  P+YYILDFKCG Y+GE +RW+Y DM +G        +TFEECLLM   E N IK+D+C+++N+IFTDINCLYN  +VK K  +++ K +E  +   SLR+++  L +    FK +KR+
Sbjct:    1 MLYANDYDLNANLEISSTVGVLHKVYLEFLQIFTKAYHDPEYYILDFKCGVYQGEPVRWSYDDMKKGYKMIHKHRLTFEECLLMDSDEGNIIKVDICYIHNNIFTDINCLYNFHMVKEKNSIEETKIKEANQITDSLRDDMKRLRKEGNLFKVIKRF 157
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BLAST of mRNA_D-dudresnayi_contig976.28552.1 vs. uniprot
Match: A0A519X4F8_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519X4F8_9SPHI)

HSP 1 Score: 93.2 bits (230), Expect = 4.400e-20
Identity = 40/75 (53.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:  466 YFKALKRYFSLGMIEGKIDQDVLDLLNSDYGIMYKFINFLKLVIEMIEPDFKPVKIEVVQGNLEYIKQFASHITS 690
            YFK +KR+FSL +I+  +D+++L LLNSDYG+ YKFI+++ LV+ M+E  FKP+ +++V  NLE+IKQFA+HI +
Sbjct:    7 YFKVIKRFFSLALIKDSMDKNILHLLNSDYGMFYKFIHYVGLVVLMLEQTFKPIPMDLVTTNLEFIKQFANHIAN 81
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BLAST of mRNA_D-dudresnayi_contig976.28552.1 vs. uniprot
Match: A0A6G6XMG7_9VIRU (Uncharacterized protein n=1 Tax=Dishui Lake virophage 2 TaxID=2704064 RepID=A0A6G6XMG7_9VIRU)

HSP 1 Score: 67.0 bits (162), Expect = 4.260e-9
Identity = 81/296 (27.36%), Postives = 134/296 (45.27%), Query Frame = 1 
Query:    1 LIGSNKIRNILYSNDYDLNADVGVTDSVTVLH--NIYKE-------FLSMFK-----KAHASPDYYILDFK---------------CGTYEGES----------IRWTYQDMIRGNVRR--GTKAITFEECLLMEDNTIKLDLCFLYNDIFTDINCLYNLFIVKNKEELKKMKAEEEKKAGKSLREEITELEQNKEYFKALKRYFSLGMIEGK----IDQDVLDLLNSDYGIMYKFINFLKLVIEMIEPDFKPVKIEVVQGNLEYIKQFASHITSMNI-ENYLNRLIKVIKMNSIK 750
            LIGSN +R+ILY +DYD+   +    +    H  + YKE       +++ FK     +     DY     K                   EGE           +RW  +D+  G ++   GT   T EECLL +  T+K+DL     D F +I+   N +I     +    +   +K   K L ++I    +N   FKALKR FSL ++E K    ID+ ++D  N   G + K    L+++ +++  DF+  K E +Q NL+ IK+  S +  +   E   + + K+ + +++K
Sbjct:   28 LIGSNSLRSILYGSDYDVETQLLNNPASIKKHFQDAYKEAEKDPLVYITDFKCGWDERLKYEGDYSAKSLKKYLKNPLIPRGKKMAINRAEGEKKEDLVRELFILRWKPKDVEAGKIKLIDGTYK-TMEECLL-DPTTLKIDLIKQVGDQFCEIS--ENYYIKTKSGKTNYPENPTKKLVEKGLEDDIRYY-RNTNAFKALKRLFSLYLLEDKKSPKIDK-MIDFFNGQVGYLNKIRAELEILEKVLTQDFRKPKWETIQANLQMIKEQLSSVFEIPFSEKIFDEIDKITEKSALK 317
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig976.28552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A519SQX0_FLASP5.580e-11156.62Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
A0A519SEA7_FLASP1.160e-5149.72Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
A0A4Q5TAF5_9BACT7.950e-4649.04Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A519X4F8_9SPHI4.400e-2053.33Uncharacterized protein n=1 Tax=Pedobacter sp. Tax... [more]
A0A6G6XMG7_9VIRU4.260e-927.36Uncharacterized protein n=1 Tax=Dishui Lake viroph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig976contigD-dudresnayi_contig976:10339..11163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size825
Cds size825
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.5946047-CDS-D-dudresnayi_contig976:10338..111631622930931.5946047-CDS-D-dudresnayi_contig976:10338..11163Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 10339..11163 +
1690557969.9841352-CDS-D-dudresnayi_contig976:10338..111631690557969.9841352-CDS-D-dudresnayi_contig976:10338..11163Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 10339..11163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig976.28552.1prot_D-dudresnayi_contig976.28552.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig976 10339..11163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig976.28552.1

>prot_D-dudresnayi_contig976.28552.1 ID=prot_D-dudresnayi_contig976.28552.1|Name=mRNA_D-dudresnayi_contig976.28552.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=275bp
LIGSNKIRNILYSNDYDLNADVGVTDSVTVLHNIYKEFLSMFKKAHASPD
YYILDFKCGTYEGESIRWTYQDMIRGNVRRGTKAITFEECLLMEDNTIKL
DLCFLYNDIFTDINCLYNLFIVKNKEELKKMKAEEEKKAGKSLREEITEL
EQNKEYFKALKRYFSLGMIEGKIDQDVLDLLNSDYGIMYKFINFLKLVIE
MIEPDFKPVKIEVVQGNLEYIKQFASHITSMNIENYLNRLIKVIKMNSIK
KMKAALEKLVNDMSDSLNKEILLS*
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mRNA from alignment at D-dudresnayi_contig976:10339..11163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig976.28552.1 ID=mRNA_D-dudresnayi_contig976.28552.1|Name=mRNA_D-dudresnayi_contig976.28552.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at D-dudresnayi_contig976:10339..11163+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTGATTGGATCGAACAAGATTCGGAACATTCTTTATTCCAATGACTACGA
TCTGAACGCAGACGTTGGTGTAACGGATTCTGTAACGGTTCTGCACAACA
TTTACAAAGAGTTTCTTTCTATGTTCAAGAAAGCCCATGCTAGCCCCGAC
TATTACATCCTGGATTTCAAATGTGGTACATACGAAGGAGAGTCCATTCG
ATGGACGTATCAAGATATGATCCGTGGCAATGTTAGACGCGGAACAAAGG
CCATTACATTCGAAGAATGCTTGCTCATGGAAGATAATACCATAAAGTTA
GATCTATGTTTCCTCTATAACGATATATTCACGGATATCAATTGTTTGTA
CAATCTGTTCATTGTCAAGAACAAGGAAGAGTTAAAGAAAATGAAGGCAG
AAGAGGAAAAGAAGGCTGGAAAGTCGTTGCGAGAAGAAATTACTGAATTG
GAACAAAACAAGGAATACTTCAAAGCCTTGAAAAGGTATTTCAGCCTTGG
AATGATCGAGGGGAAGATCGATCAGGATGTACTAGACCTATTGAATAGTG
ACTATGGAATTATGTACAAATTTATTAACTTCTTAAAACTAGTCATTGAA
ATGATTGAACCAGATTTCAAACCCGTAAAAATTGAAGTAGTTCAAGGAAA
CTTAGAATATATCAAGCAGTTTGCGAGTCATATTACATCAATGAATATAG
AGAATTACTTGAATCGATTAATTAAAGTAATTAAAATGAATAGTATTAAA
AAGATGAAGGCTGCTCTGGAGAAATTAGTGAATGACATGAGCGATTCTCT
TAATAAAGAGATTTTACTCTCTTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig976:10339..11163+

>mRNA_D-dudresnayi_contig976.28552.1 ID=mRNA_D-dudresnayi_contig976.28552.1|Name=mRNA_D-dudresnayi_contig976.28552.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at D-dudresnayi_contig976:10339..11163+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTGATTGGATCGAACAAGATTCGGAACATTCTTTATTCCAATGACTACGA
TCTGAACGCAGACGTTGGTGTAACGGATTCTGTAACGGTTCTGCACAACA
TTTACAAAGAGTTTCTTTCTATGTTCAAGAAAGCCCATGCTAGCCCCGAC
TATTACATCCTGGATTTCAAATGTGGTACATACGAAGGAGAGTCCATTCG
ATGGACGTATCAAGATATGATCCGTGGCAATGTTAGACGCGGAACAAAGG
CCATTACATTCGAAGAATGCTTGCTCATGGAAGATAATACCATAAAGTTA
GATCTATGTTTCCTCTATAACGATATATTCACGGATATCAATTGTTTGTA
CAATCTGTTCATTGTCAAGAACAAGGAAGAGTTAAAGAAAATGAAGGCAG
AAGAGGAAAAGAAGGCTGGAAAGTCGTTGCGAGAAGAAATTACTGAATTG
GAACAAAACAAGGAATACTTCAAAGCCTTGAAAAGGTATTTCAGCCTTGG
AATGATCGAGGGGAAGATCGATCAGGATGTACTAGACCTATTGAATAGTG
ACTATGGAATTATGTACAAATTTATTAACTTCTTAAAACTAGTCATTGAA
ATGATTGAACCAGATTTCAAACCCGTAAAAATTGAAGTAGTTCAAGGAAA
CTTAGAATATATCAAGCAGTTTGCGAGTCATATTACATCAATGAATATAG
AGAATTACTTGAATCGATTAATTAAAGTAATTAAAATGAATAGTATTAAA
AAGATGAAGGCTGCTCTGGAGAAATTAGTGAATGACATGAGCGATTCTCT
TAATAAAGAGATTTTACTCTCTTAGTTGATTGGATCGAACAAGATTCGGA
ACATTCTTTATTCCAATGACTACGATCTGAACGCAGACGTTGGTGTAACG
GATTCTGTAACGGTTCTGCACAACATTTACAAAGAGTTTCTTTCTATGTT
CAAGAAAGCCCATGCTAGCCCCGACTATTACATCCTGGATTTCAAATGTG
GTACATACGAAGGAGAGTCCATTCGATGGACGTATCAAGATATGATCCGT
GGCAATGTTAGACGCGGAACAAAGGCCATTACATTCGAAGAATGCTTGCT
CATGGAAGATAATACCATAAAGTTAGATCTATGTTTCCTCTATAACGATA
TATTCACGGATATCAATTGTTTGTACAATCTGTTCATTGTCAAGAACAAG
GAAGAGTTAAAGAAAATGAAGGCAGAAGAGGAAAAGAAGGCTGGAAAGTC
GTTGCGAGAAGAAATTACTGAATTGGAACAAAACAAGGAATACTTCAAAG
CCTTGAAAAGGTATTTCAGCCTTGGAATGATCGAGGGGAAGATCGATCAG
GATGTACTAGACCTATTGAATAGTGACTATGGAATTATGTACAAATTTAT
TAACTTCTTAAAACTAGTCATTGAAATGATTGAACCAGATTTCAAACCCG
TAAAAATTGAAGTAGTTCAAGGAAACTTAGAATATATCAAGCAGTTTGCG
AGTCATATTACATCAATGAATATAGAGAATTACTTGAATCGATTAATTAA
AGTAATTAAAATGAATAGTATTAAAAAGATGAAGGCTGCTCTGGAGAAAT
TAGTGAATGACATGAGCGATTCTCTTAATAAAGAGATTTTACTCTCTTAG
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