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Homology
BLAST of mRNA_D-dudresnayi_contig9749.28539.1 vs. uniprot
Match: D7FJF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF7_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.290e-42 Identity = 73/136 (53.68%), Postives = 102/136 (75.00%), Query Frame = 1
Query: 4 YVGLGCTALMFGVSYTFANHWISKVSYFPAYRLLSIGTHTFFGSERVPRLIKLGGIVLPAVKSSAVYIPLKVKGDMLFSLLDSDDGIFHNRDLLMKLLKATPDGDVAAHASTAGDT--TPVAAKVKQPWKRKRRSR 405
Y+GLG TA+M ++TFA HW+S++SY P RLLSIGTH FFG+ER+PRL++LGG V+ K AVY+ KV+GD SLLD+ DG+FHNR++LM+LLKA+P+G+VA ++ A D+ +P K KQ W +++R R
Sbjct: 70 YLGLGFTAIMTAATHTFARHWVSQISYLPELRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKAVYLTFKVRGDRFNSLLDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR 205
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_006170.1 |
| Exons | 5 |
| Model size | 1143 |
| Cds size | 378 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930929.7083664-UTR-D-dudresnayi_contig9749:6315..7050 | 1622930929.7083664-UTR-D-dudresnayi_contig9749:6315..7050 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9749 6316..7050 - |
| 1690557969.3274405-UTR-D-dudresnayi_contig9749:6315..7050 | 1690557969.3274405-UTR-D-dudresnayi_contig9749:6315..7050 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9749 6316..7050 - |
| 1622930929.8206687-UTR-D-dudresnayi_contig9749:10252..10282 | 1622930929.8206687-UTR-D-dudresnayi_contig9749:10252..10282 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9749 10253..10282 - |
| 1690557969.3934443-UTR-D-dudresnayi_contig9749:10252..10282 | 1690557969.3934443-UTR-D-dudresnayi_contig9749:10252..10282 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9749 10253..10282 - |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9749.28539.1 >prot_D-dudresnayi_contig9749.28539.1 ID=prot_D-dudresnayi_contig9749.28539.1|Name=mRNA_D-dudresnayi_contig9749.28539.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=126bp
MFGVSYTFANHWISKVSYFPAYRLLSIGTHTFFGSERVPRLIKLGGIVLP
AVKSSAVYIPLKVKGDMLFSLLDSDDGIFHNRDLLMKLLKATPDGDVAAH
ASTAGDTTPVAAKVKQPWKRKRRSR* back to topmRNA from alignment at D-dudresnayi_contig9749:6316..10282- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9749.28539.1 ID=mRNA_D-dudresnayi_contig9749.28539.1|Name=mRNA_D-dudresnayi_contig9749.28539.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3967bp|location=Sequence derived from alignment at D-dudresnayi_contig9749:6316..10282- (Desmarestia dudresnayi DdudBR16 monoicous)
AGATACGTGGGTCTCGGATGCACCGCGTTGATGTTCGGCGTTTCCTACAC
CTTCGCCAACGTAAGACCTTGTGTTGCCGTCCCCATGTTCGTGTTGCCGG
TGGCTTTTTGTGACGAGAAGGCGCCTTTGTTGTTCTTTGTGTGCGTGCAG
TGTGCATTGTGCCGGTTGGACTGATTATCGTCGGCGTGTTGATTGGTGCA
GACGGTCCTCTGTACGCACTGTTCGTGTTGAACAAGCAAAGTGGTTGGCT
TCGATCAGAGACGTACCAGGCATACACACATGGTTGCATTGATTGCTGTC
ACGGGGCTGGCGCAGACTGTCCTGTACGCACTGTTTGTGTTGCGCTGTTG
TAGCAGATAGAGACGTACCAGACACACTTCGTGTTTGCATCATGTATTTC
GTTTTGTAGAGCTATTACAAGTAGCTTTGGACAGGCGTAACGTTGGAACA
AACGATTCCGGAACACTCGAGTCTGCTATTCTGTTTCGCACTACTGCACG
CCATGTTTTGCAATTAAGGTTATATCGAGAATTTTCCCATGGATAGCGGC
GACCTAATTTTATATATTCGTAACCTCATCGGGCTTATTTTTATCGATAG
AACGCTAGTACAGGGTAGAATCGAGCCACCCTTGCCCGGGGGGTCTAGTC
GACCATTATTTTACATCCGCCCCGCCGTGCCAACCCGACCCCATTTTGCG
CCGCAGCACTGGATCAGCAAGGTGTCTTACTTTCCGGCGTATAGGTTACT
CTCCATCGGTACGCACACCTTCTTCGGGGTGAGTGAAATCTTTGCCAGCT
ACGAGAGGACCGTTGTTTTGCTGAAAAAAAAAACGCCAAATATGAAACCT
TACGGGCTGTGTATTTCCCACGTCGCAGTTTTCTCGTTTATTGCAACGGC
GGGCGTCGCCGTGATAAGCATTTGGTCCCGCAGCGGTGCCGTCTGTGGTA
TAATAGTCCGTGAGCGTCGTAAATACAAACATAGTGTGCCAAAAAAGAAA
AGAGGGCTGACCCTGCTGCATGTGTCTCTCCGCCGCGAGCAGGAACGCAC
GACACCGGAGGTAGCCGTTGTGTGCCTCTGAAACCCGTGCAAGAAAATGA
GGCGCGCTGTCATGCTGTCATAGCTTAATTGTGAAAACATGAAACACCGG
GTTTCTATCCATGTAGTCGCAGAATGTATCCACTGCTAAATCGCCGGCGC
CACATACAGTAATTGACGGCCAGTTTATCGGGGTGCAGTTCCCGTACGCA
TTTATTGCGTGAGAGAAGTTACGTAGCTCGACGTATCCTTTCGTTTGATT
AGGCTCTCGCGGCTGGAGCATTTACCATATTTATTTTTATGTTGATTTTT
TTTGCTTTTGTTTCCCTCCTCGTCCTGCAGTCGGAACGCGTTCCTAGGTT
GATCAAGCTCGGAGGAATAGTGCTCCCCGCGGTCAAGTCTTCCGCTGTGT
ACATCCCACTAAAGGTACGCATACGCACTCGCTCGCGGAACTGTATGTAT
CCCTTTCGCTCGATGCGCCACTCGAAATACACCAGGATGCCCTGTAAGGT
GGTGTCCGCGTGTTGTGTCCGCTGGGGTAATTCTACTACGCGCTTGCGGC
CTGGCATCCCCGGGATCTACTCCCTGTAACGGCTACCTCAAGACTGGCAC
AAAGAGGCGTTTTTTCTTGTGTGCGTTAATGTTAGCGCGTCCTTAAAAGT
AGACGCTCTTGCGGGGCGTGCACGATAAACACATTAAGTTTTGCCAACAT
CCGGATGGTGAGGTATGGCATAAGCGTGTATAATATGGACCCCCCCCCCC
CCCCCCCACATACGCCATCCCCACGACACACGAACACCAAACGTGGCCAA
AAACAAGGTTACGCTGTTGTCCCCTTTTTTTGTCTAGTGGGGGCTTGACG
CGCATCGTCCCATTTTTGTTTTTCTTTGCCCGTACCTCGAGGTTTTGTGT
GGTGTATCTCGAGCGACTAGGCGTTGCTATGCGGACTCGAAAGCCACAAT
TTTCTGAGGCTGCTGCGCTGTGAAACCTGCGCGTTTTGTTGGTGTCGTTG
TTGTTGTCGTTGTCTGAAATGTATGGCAATGTGTCGTGAGTGCAGGTGAA
GGGAGACATGCTTTTCTCCCTTTTGGATTCAGATGACGGGATTTTCCACA
ACCGGGATTTGCTGATGAAGCTGCTCAAAGCTACTCCCGACGGAGACGTG
GTGAGAATGTTTGTCGGGGGCGGCGGAGAGGGGTTGTTGGCCGAAGTATC
GATATCTGAGCCTCCGTTACAACTTGTCCGGGGGAATGTTTTTGGAAGTC
GTTTGATTATGCTTGCTCGTAATGTACCAACGTGGCCTGTTCAGCACCTC
GGAACATTGTCGAAGTAACCCTACCCCCTAACCTAAAGTAATGACCACAG
CATATTAATAGCAAGTAAAAAGAAAAAGTTAAAACCCAACCCCCGACTCA
TCGTAAAGCCTGCTGCGGAGTTTACTGCTGGGGGTGCGTGAAACTGGACA
CAGTCTCTTTGGGACATTGAAGCGAGGCACTATTATGGTGCTGGGTGTGT
GTAATGTCGCGATGGCTAAGCTGCAACGTGCCTGGTACGTCGCAGTCGCC
CACACCGAAGCAAGAAATACCGAGTTGTTAGGAGTCGTTAGCCACTACTA
CTATGCTACTAGTCAGCGCTGACTGGTAGCACAGTAGTGGTGGCTGTTTT
TCTTGAAATCACAATTTGTTCGCGAAGCTCAAGGCCAGGCACTTTATCTT
CGCCGAGGGCGGCCCGCCTCTTCAGCGCTGTTTTGTCGTCGTGGTATTTT
CCATCTACGATACTGTTGAGAAAAAGTCCAAGATTTTTGTTTTGCCGGGT
CTCGAACCCCTGAAATATATATTTTGAAAGATAACGTGTTTACAACGAAA
ACCACTGAGATTTCAGTTGCTCACCATAAGTGACTTACTCGAGTTGCTTT
CGTACGCCTAGTCAATAAACACTCTCACTGACTGCACAGGTGGAGTGAAA
AAGAAACGCGACGACGGTAGCCATTATTGCTCTATAAGACAAAACCTTGC
GTTAGAACCGCGGCGCAGCCCATGGGTTCCAGTTTTCTCCGCATTGTCCC
GCTACAGGCTAAATGTTTGTCCTTGTTTGCTACCGTCTTCCGCAGGCTGC
GCATGCGTCGACGGCTGGTGATACCACTCCTGTAGCTGCCAAGGTTAAGC
AGCCTTGGAAGAGGAAGCGGCGGAGTCGCTAGTCACCGGCTACGGTAGTT
CACCACTCATATTTATGACAGCTGCTGTTTTTATCCGTGAGCGTATTTCG
CCGATAGCTGTCGCGATAGGACAGAGAAGATCCGGCAGTTGACCTCACGA
TATTGCGGTAAGATGGATTTTTATGCCGTCCAGAGTACGTCTGCCGTAGT
AGCTCTCTTCGCCGGGAATAAAGCAAATAGCGACTTTAGTGGCATCTACT
TTGGCCAAGTGGGCGCCTTACTGGTACGTAACCGGAAGCTCTGGGGAGCT
TTAGTGTGCATATACGGCAGCAGATTATGGAAGGAACAACGACGGGCATA
AAGTAATGTACACCTCGAGGCTGGAGCTCTAGTGGATCCGATTGCATGCG
TCCACCACCTAGCGTTAATGGCGGGGTATTGAACTGCGTCCAATCGGCGA
TTATGCGCTGAATTTCGCAAGCGGAAAGACGTACCAGTCTATGTTTGGGA
AGTAGAAAAACACGGAGGAACAGAAGAGGCTTGCATGGCAACGACGTTAT
GCCGGAGAATCCCGCTTTTCAGCGCGCCAAGAACACGAGCTCGCCAGTGA
ACATGTTAGATATGTTGTGGATAAACTAACTCGTGAACACCTGCTTGTTG
ACAACGGCAAAGCACGTTCAACCTGGCGCATGCGCTCCCTCTGGCAGTCG
GTGGAGATAAAGTTATGCCATAACAGCATGAAACCGTCAATACATGTGGT
CACAACGTGCATGACAG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9749:6316..10282- >mRNA_D-dudresnayi_contig9749.28539.1 ID=mRNA_D-dudresnayi_contig9749.28539.1|Name=mRNA_D-dudresnayi_contig9749.28539.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at D-dudresnayi_contig9749:6316..10282- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTCGGCGTTTCCTACACCTTCGCCAACATGTTCGGCGTTTCCTACAC
CTTCGCCAACCACTGGATCAGCAAGGTGTCTTACTTTCCGGCGTATAGGT
TACTCTCCATCGGTACGCACACCTTCTTCGGGCACTGGATCAGCAAGGTG
TCTTACTTTCCGGCGTATAGGTTACTCTCCATCGGTACGCACACCTTCTT
CGGGTCGGAACGCGTTCCTAGGTTGATCAAGCTCGGAGGAATAGTGCTCC
CCGCGGTCAAGTCTTCCGCTGTGTACATCCCACTAAAGTCGGAACGCGTT
CCTAGGTTGATCAAGCTCGGAGGAATAGTGCTCCCCGCGGTCAAGTCTTC
CGCTGTGTACATCCCACTAAAGGTGAAGGGAGACATGCTTTTCTCCCTTT
TGGATTCAGATGACGGGATTTTCCACAACCGGGATTTGCTGATGAAGCTG
CTCAAAGCTACTCCCGACGGAGACGTGGTGAAGGGAGACATGCTTTTCTC
CCTTTTGGATTCAGATGACGGGATTTTCCACAACCGGGATTTGCTGATGA
AGCTGCTCAAAGCTACTCCCGACGGAGACGTGGCTGCGCATGCGTCGACG
GCTGGTGATACCACTCCTGTAGCTGCCAAGGTTAAGCAGCCTTGGAAGAG
GAAGCGGCGGAGTCGCTAGGCTGCGCATGCGTCGACGGCTGGTGATACCA
CTCCTGTAGCTGCCAAGGTTAAGCAGCCTTGGAAGAGGAAGCGGCGGAGT
CGCTAG back to top
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