mRNA_D-dudresnayi_contig9728.28508.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9728.28508.1
Unique NamemRNA_D-dudresnayi_contig9728.28508.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9728.28508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9728contigD-dudresnayi_contig9728:1199..1933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRubredoxin
Ec32 orthologEc-27_001080.1
Hectar predicted targeting categorysignal peptide
Exons2
Model size318
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9728.28508.1prot_D-dudresnayi_contig9728.28508.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9728 1199..1881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.0017622-CDS-D-dudresnayi_contig9728:1198..13891622930926.0017622-CDS-D-dudresnayi_contig9728:1198..1389Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9728 1199..1389 -
1690557967.8523233-CDS-D-dudresnayi_contig9728:1198..13891690557967.8523233-CDS-D-dudresnayi_contig9728:1198..1389Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9728 1199..1389 -
1622930926.0235991-CDS-D-dudresnayi_contig9728:1808..18811622930926.0235991-CDS-D-dudresnayi_contig9728:1808..1881Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9728 1809..1881 -
1690557967.8652768-CDS-D-dudresnayi_contig9728:1808..18811690557967.8652768-CDS-D-dudresnayi_contig9728:1808..1881Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9728 1809..1881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.0544643-UTR-D-dudresnayi_contig9728:1881..19331622930926.0544643-UTR-D-dudresnayi_contig9728:1881..1933Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9728 1882..1933 -
1690557967.873952-UTR-D-dudresnayi_contig9728:1881..19331690557967.873952-UTR-D-dudresnayi_contig9728:1881..1933Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9728 1882..1933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9728.28508.1

>prot_D-dudresnayi_contig9728.28508.1 ID=prot_D-dudresnayi_contig9728.28508.1|Name=mRNA_D-dudresnayi_contig9728.28508.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=88bp
MRSSTSVSVAVALLATTTARAFVQAPRGCVMSGAPPTRTHVRSTRVLQRP
RNVVLTMFGGEEPQPESSGTPSADDGGIEAEGESVVAV
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mRNA from alignment at D-dudresnayi_contig9728:1199..1933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9728.28508.1 ID=mRNA_D-dudresnayi_contig9728.28508.1|Name=mRNA_D-dudresnayi_contig9728.28508.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at D-dudresnayi_contig9728:1199..1933- (Desmarestia dudresnayi DdudBR16 monoicous)
CACAACAGTTGCCACGCCCTCGTGTGCTGTTTAACTGGGTTCTTCGAAAA
CCATGCGTTCTTCTACTTCCGTTTCCGTGGCCGTGGCCCTCCTCGCTACT
ACGACCGCACGCGCATTCGTGCAAGGTACCAACGGCATGACGATTATTGT
ATCTTCGACTTTGCTTCTTGGTGTCATGTTCCTTGCTGTCATGTTCCTTG
TATCATACCAGTATGATAGTACTGTTATGCATGCTTGTATGATAGTAGTC
GTGTGTTTCTCGTCAGCTTCCTTGCCCCTTCCCGCATTGCCTGCATTGCA
TTGCAAACAACCTCGCACGTGTGTCATATCGTCGTGTCTACCTTCCGTGG
ATGATTAGTGTTGTCGTTGACGACCAAAGGATTTCATTCCCCATCTCCTT
GATTGCTCGTCTCGAGCGCACTGTCAATTTACTGACGTGTTTCACCACGT
CTTCGTGTGTCGTACTTTCAAAATCCGTTGCCTACTGCTGCTGCTGCTGC
TGCCGCGTTACTCTCTGCTCTACCGTGGGCACAATCAATCGTAGCTCCGC
GAGGATGTGTCATGAGCGGCGCGCCGCCGACACGCACTCACGTACGCTCG
ACGCGTGTCCTTCAGCGGCCAAGGAATGTAGTATTGACGATGTTTGGGGG
GGAGGAGCCACAGCCGGAGTCTTCTGGGACACCCTCAGCAGATGACGGGG
GGATAGAGGCGGAAGGGGAAAGTGTCGTTGCGGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9728:1199..1933-

>mRNA_D-dudresnayi_contig9728.28508.1 ID=mRNA_D-dudresnayi_contig9728.28508.1|Name=mRNA_D-dudresnayi_contig9728.28508.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at D-dudresnayi_contig9728:1199..1933- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCGTTCTTCTACTTCCGTTTCCGTGGCCGTGGCCCTCCTCGCTACTAC
GACCGCACGCGCATTCGTGCAAGATGCGTTCTTCTACTTCCGTTTCCGTG
GCCGTGGCCCTCCTCGCTACTACGACCGCACGCGCATTCGTGCAAGCTCC
GCGAGGATGTGTCATGAGCGGCGCGCCGCCGACACGCACTCACGTACGCT
CGACGCGTGTCCTTCAGCGGCCAAGGAATGTAGTATTGACGATGTTTGGG
GGGGAGGAGCCACAGCCGGAGTCTTCTGGGACACCCTCAGCAGATGACGG
GGGGATAGAGGCGGAAGGGGAAAGTGTCGTTGCGGTGCTCCGCGAGGATG
TGTCATGAGCGGCGCGCCGCCGACACGCACTCACGTACGCTCGACGCGTG
TCCTTCAGCGGCCAAGGAATGTAGTATTGACGATGTTTGGGGGGGAGGAG
CCACAGCCGGAGTCTTCTGGGACACCCTCAGCAGATGACGGGGGGATAGA
GGCGGAAGGGGAAAGTGTCGTTGCGGTG
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