mRNA_D-dudresnayi_contig9720.28498.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9720.28498.1
Unique NamemRNA_D-dudresnayi_contig9720.28498.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9720.28498.1 vs. uniprot
Match: D8LNR2_ECTSI (Zinc finger, C2H2 type family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.190e-14
Identity = 61/159 (38.36%), Postives = 74/159 (46.54%), Query Frame = 3 
Query:    3 GVGSRLPLGAKAGGDPDSATRGAYDLAGLDNMEGAFPSRKNSKNTFEGGSGSYHPGYDRERSSTGMGETRDSLDNLAVSASD------RRXXXXXXXXXXXXXXXXXXXGYASQKRQSMGTEES--------GTRVARGGRI----EDPGGRWTGPTRD 425
            G  S+LP GA+ G    SAT+GAYDL  LDNM+GAFP ++ S N +      Y       R     GETRDSLD LAVS SD       R                     +   + + G+E +        G   A GGR     EDPGGRWTGPTR+
Sbjct:   53 GARSKLPPGARVG--DASATQGAYDLTVLDNMDGAFPPKRTSANIYR--DNRYDKADGGVRGPMDFGETRDSLDRLAVSTSDVDRQRLARMGSTSSYSSAVAPPPLPSPTKSESTQDNNGSEHTHRPHAPRAGEEAATGGRRRIIREDPGGRWTGPTRE 207
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9720.28498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR2_ECTSI3.190e-1438.36Zinc finger, C2H2 type family protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9720contigD-dudresnayi_contig9720:426..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size428
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9720.28498.1prot_D-dudresnayi_contig9720.28498.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9720 426..2851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930924.792562-CDS-D-dudresnayi_contig9720:425..5861622930924.792562-CDS-D-dudresnayi_contig9720:425..586Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9720 426..586 -
1690557967.4277852-CDS-D-dudresnayi_contig9720:425..5861690557967.4277852-CDS-D-dudresnayi_contig9720:425..586Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9720 426..586 -
1622930924.8144596-CDS-D-dudresnayi_contig9720:1686..18901622930924.8144596-CDS-D-dudresnayi_contig9720:1686..1890Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9720 1687..1890 -
1690557967.4381397-CDS-D-dudresnayi_contig9720:1686..18901690557967.4381397-CDS-D-dudresnayi_contig9720:1686..1890Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9720 1687..1890 -
1622930924.8372195-CDS-D-dudresnayi_contig9720:2790..28511622930924.8372195-CDS-D-dudresnayi_contig9720:2790..2851Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9720 2791..2851 -
1690557967.4521606-CDS-D-dudresnayi_contig9720:2790..28511690557967.4521606-CDS-D-dudresnayi_contig9720:2790..2851Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9720 2791..2851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9720.28498.1

>prot_D-dudresnayi_contig9720.28498.1 ID=prot_D-dudresnayi_contig9720.28498.1|Name=mRNA_D-dudresnayi_contig9720.28498.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=142bp
MAWALGFLWGPKREETLTVQRGVRTIWPDWTTWKAPSLLGKTAKTPSRAG
AVAIIRATTGSARRRAWGRRGTRWTIWQFQPPTGGDFPVPPPPPPPTTTT
ITTTATRVKNGSRWARKNLAPGLHAGGGSRIPGDDGQGRPGT
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mRNA from alignment at D-dudresnayi_contig9720:426..2851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9720.28498.1 ID=mRNA_D-dudresnayi_contig9720.28498.1|Name=mRNA_D-dudresnayi_contig9720.28498.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2426bp|location=Sequence derived from alignment at D-dudresnayi_contig9720:426..2851- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGTGGGCTCTAGGCTTCCTTTGGGGGCCAAAGCGGGAGGAGACCCT
GACAGTGCAACGTGAGCCCTCTTTTTCTACCCTTTTCTTTTCTTTTTCCG
ATTCGATGAAAGTCGACGAGCTTTGTATGGGAATGCCGAACCCTGTGCGC
GATAACAGCAGTCAAAGCGGGAGAAGGGTAGACACCCGTGACTACGGCTT
GCTCAGACAAGACAGGCGCACTGAGCAATGAATAGAAGAACTCCTGTGAG
CTATAATATCTAGCTATAATAGCTATACTAATTATACTATTAGTAATGGA
CTGGGAAGTTATGGTGGACAAAAATAACGCTGGTGATTTTTGATAAAAAA
TGATGTATAACTACTGTTGTAGTATCATACCGGCTTGTCCTGCTCTGTGC
AAGTATCTGTGATATATTGTGGACTGTAGTAGCATATAACGCTTCCAGCA
AATGACTTTTGGAATAGATAACCACGCGTTTTTTTTTTTGTATTTTTTGT
ATGTTGTGTGCTGGCTGTACGTGCTTCTGGCTTGGATATAATGAATTTGT
TCCAATCAAGCGGCCTTAAGTGTTATTATTAGCGTATCGTACCTTTTTGA
CGGCAACCCAACCCGTTGTACCTTTTCTCGTCGCGATACCCTCTTTGGTG
GAGGTGTAAGTCCTAGCCTTTTTTTCACGCGCTGTCTTTGTGAACCGTGA
AACCGTTTGAGTCGCTACATGTCCATGCGTTTATTGTTTTGCGCACGCCA
TCCATGCAGACATACTGTCTGCGATTGCACGGATCCAGCCTCCGACAAAC
TCCTGTTGTGGTAAAAAACATGTATGTATGTGTGTGTTTGTTCGTTCGTC
GGGGGGGGGTGCATGTAATGTCCGTCTCCGGCCAAGTACTACAATCCATA
CTATGTGATACGTACCGCTGAGTTGTTTCACAAAGAACACCTCGTTATTG
TAACACCTCAGGCGGGGTGCGTACGATTTGGCCGGACTGGACAACATGGA
AGGCGCCTTCCCTTCTAGGAAAAACAGCAAAAACACCTTCGAGGGCGGGA
GCGGTAGCTATCATCCGGGCTACGACAGGGAGCGCTCGTCGACGGGCATG
GGGGAGACGAGGGACTCGTTGGACAATCTGGCAGTTTCAGCCTCCGACAG
GCGGCGACTTTCCAGGTGAGAGCGGTCGCCGCCCGTTTTTTGTTGTCGTC
GTTGCTTATGGTATGTATGCAAGCGCGTGGATGTGTGATGGAACAGGGTA
TAGAAGGATCAGATTGGCAAAAGCGATCGGGTATACGTACCTCTTTTAGT
GGTCTCTGTTGTCCAGTAGTACCAGATGGGTGTTGGTTTTCGAGGAATGT
TGGGAAGCTTTCTTGCTGCTGTTGTTGTTGTTTTCTAGCTGTTGTACAGA
AGTAGTACAAGTACAGGGCAAAGAATAGAAAAGAAACAGGACTCCTGGCT
CAGACTGTTTTCGTTACTATTGCTACTACTATGGCAATGGTGTGTCCCAT
GTCCTACACTAACTTCAGCACAGCCGTGTCGGACTTTCTTAGTTCCCGAC
CATTTTCATCGTGGGTTTCTTATCAGTGGCGTTTTTATTTTATTTTACTA
TGTCTCTTTTTATCCTCCGGCGGGTGGTAAGGTAAAAGTACATCTCCAGC
TCCCAAACTTCAGAAGCTATGATAGCCACGTCGTGACCAACCATTGCCGA
TTTAACCCTGATCAACCATCGTAGACCACAACATTGGCGTTAGTTACAGC
GCGGGTGCGTCGGTCGCCCTTCTACTCCTATAGGATCATCAGGCATCAAC
CATGGGAGGTAGCCGCCCGAAGAGGCAACGTGTAAAAGTTTCCCCCCTGG
TACCATTTCTTATTGGGTCTTCTGTACTGAAACTGTATTATCGTATGCAT
GCTACGCGCACACCAACAAGCACGCCAAACGTATTTTTGGTGCATTTATT
TGTTTCTTCCCTTTATTTTCCCCTGTTCGGTTTGTGCTTCTTGTCGTCAC
CCTTCATAAAGACACAGTACAGTACAGTACAGTACAGTACAGTACAGTAC
AGTACAGTACAGTACAGTACAGTACAGTACAGTACAGTACAGTACACCTA
TCAGTATAGTTAACAGCACGGTACACCTAACAGTGCAGTTAACAGCACGG
TTGCATCAGGGCGCCACATTTTACTACATATTTCCTCCTGACCCGCAAAC
ATCCCACTTGCCACACCTCGACCGACACCACTCGATATGGCACTCAACGC
CGACAACACGACCAGTACCACCACCACCACCACCACCAACAACAACAACA
ATAACAACAACGGCTACGCGAGTCAAAAACGGCAGTCGATGGGCACGGAA
GAATCTGGCACCCGGGTTGCACGCGGGGGGAGGATCGAGGATCCCGGGGG
ACGATGGACAGGGCCGACCAGGGACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9720:426..2851-

>mRNA_D-dudresnayi_contig9720.28498.1 ID=mRNA_D-dudresnayi_contig9720.28498.1|Name=mRNA_D-dudresnayi_contig9720.28498.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at D-dudresnayi_contig9720:426..2851- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGTGGGCTCTAGGCTTCCTTTGGGGGCCAAAGCGGGAGGAGACCCT
GACAGTGCAACATGGCGTGGGCTCTAGGCTTCCTTTGGGGGCCAAAGCGG
GAGGAGACCCTGACAGTGCAACGCGGGGTGCGTACGATTTGGCCGGACTG
GACAACATGGAAGGCGCCTTCCCTTCTAGGAAAAACAGCAAAAACACCTT
CGAGGGCGGGAGCGGTAGCTATCATCCGGGCTACGACAGGGAGCGCTCGT
CGACGGGCATGGGGGAGACGAGGGACTCGTTGGACAATCTGGCAGTTTCA
GCCTCCGACAGGCGGCGACTTTCCAGGCGGGGTGCGTACGATTTGGCCGG
ACTGGACAACATGGAAGGCGCCTTCCCTTCTAGGAAAAACAGCAAAAACA
CCTTCGAGGGCGGGAGCGGTAGCTATCATCCGGGCTACGACAGGGAGCGC
TCGTCGACGGGCATGGGGGAGACGAGGGACTCGTTGGACAATCTGGCAGT
TTCAGCCTCCGACAGGCGGCGACTTTCCAGTACCACCACCACCACCACCA
CCAACAACAACAACAATAACAACAACGGCTACGCGAGTCAAAAACGGCAG
TCGATGGGCACGGAAGAATCTGGCACCCGGGTTGCACGCGGGGGGAGGAT
CGAGGATCCCGGGGGACGATGGACAGGGCCGACCAGGGACGTACCACCAC
CACCACCACCACCAACAACAACAACAATAACAACAACGGCTACGCGAGTC
AAAAACGGCAGTCGATGGGCACGGAAGAATCTGGCACCCGGGTTGCACGC
GGGGGGAGGATCGAGGATCCCGGGGGACGATGGACAGGGCCGACCAGGGA
CG
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