mRNA_D-dudresnayi_contig971.28484.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig971.28484.1
Unique NamemRNA_D-dudresnayi_contig971.28484.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig971.28484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig971contigD-dudresnayi_contig971:6711..7811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.625176-CDS-D-dudresnayi_contig971:6710..67971622930922.625176-CDS-D-dudresnayi_contig971:6710..6797Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig971 6711..6797 +
1690557966.7167807-CDS-D-dudresnayi_contig971:6710..67971690557966.7167807-CDS-D-dudresnayi_contig971:6710..6797Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig971 6711..6797 +
1622930922.644371-CDS-D-dudresnayi_contig971:7651..78101622930922.644371-CDS-D-dudresnayi_contig971:7651..7810Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig971 7652..7810 +
1690557966.729065-CDS-D-dudresnayi_contig971:7651..78101690557966.729065-CDS-D-dudresnayi_contig971:7651..7810Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig971 7652..7810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig971.28484.1prot_D-dudresnayi_contig971.28484.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig971 6711..7810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig971.28484.1

>prot_D-dudresnayi_contig971.28484.1 ID=prot_D-dudresnayi_contig971.28484.1|Name=mRNA_D-dudresnayi_contig971.28484.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=82bp
AGAGRGWPTGEGVRPGRGSGRGNPTVVLTIDDGEEDNAYSAAIKGIAPKR
SRRGGGGNAGSHNKRTNTNISRATGLGGEAAG
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mRNA from alignment at D-dudresnayi_contig971:6711..7811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig971.28484.1 ID=mRNA_D-dudresnayi_contig971.28484.1|Name=mRNA_D-dudresnayi_contig971.28484.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1101bp|location=Sequence derived from alignment at D-dudresnayi_contig971:6711..7811+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTGGTGCGGGACGGGGCTGGCCAACAGGGGAGGGCGTACGGCCTGGACG
GGGATCGGGTCGCGGCAATCCGACGGTGGTTTTAACGGTGCGTGGTGTTT
TCGTCCTCGCTTCGGTACTTACGCGGCAAGGACCCGGACCTGTTTGTGCA
GTGTGATACTCTCGGCTTGGAGGTTATTTTTTATTATGTCTTGCCAGGAT
GTACACCTTGCCACTGAGTATTATACAACACACGCCCTCACCCGTGCTGG
TGAGTGCTTTGTTTGGACAATGATCCCAAGTGATTTGGTTTGTTCGCCTT
GTCGTTGACCGCGTTCTGCGCACCCGTTGCTACTGCTCGGCCCACATTGG
CGTGCTTATACGATGCGTACGTTGGCTTGGTCGATTTCGGTTTTTGAGGG
TTGCCGGTCTCAACCTAGGTCAATAATATGCTCGGGAAACAGTTATATGT
GGTTTGAGTTTTGTAAATATGTATCGCGGTAGCCGCTAGCGAGTGCAGCG
GCGAGAAAGGGCGTTTCGGATGATGCCGTGTAGTGGGAGAGGTTCCTGCT
TGTGGTGGTGCGTAAATAATCGCTTACACGGCGATATGAACTCGCCATGT
CACGCCCAGCCGACTTGGTGGAGTCTTGGGCACACCACCTTCAACGGAAG
CAGGATGGTGACACTTCTGGGAGAAGATTTGCTTTCAAGGCAGGCGCCAC
GGGATCGAATCCATGCCCGCCCTCCCCGTTCTTCCTGGTCTCGTTACTAT
CGCACTGTATGGTACTGAAACGCCATATATAGGGGAGATTAAAGGGCCAT
ACTGTTACGCTCGGATATATATATATATATATATATATAGGCCATGAGTG
TCGAATAACCCCCCACCTCCACCACCACCACTACCACCACTACCACCCCT
CCCTTCCACCCCGATTTTGGCGCCTTTTGCTCTCCAATAAGATTGATGAC
GGTGAGGAAGATAACGCCTACAGCGCAGCTATTAAGGGCATCGCGCCGAA
GAGAAGTCGCCGAGGGGGCGGTGGGAACGCGGGCAGCCACAACAAGCGCA
CAAACACTAACATCAGCCGAGCGACTGGCTTGGGGGGTGAAGCAGCAGGA
C
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Coding sequence (CDS) from alignment at D-dudresnayi_contig971:6711..7811+

>mRNA_D-dudresnayi_contig971.28484.1 ID=mRNA_D-dudresnayi_contig971.28484.1|Name=mRNA_D-dudresnayi_contig971.28484.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at D-dudresnayi_contig971:6711..7811+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTGGTGCGGGACGGGGCTGGCCAACAGGGGAGGGCGTACGGCCTGGACG
GGGATCGGGTCGCGGCAATCCGACGGTGGTTTTAACGGCTGGTGCGGGAC
GGGGCTGGCCAACAGGGGAGGGCGTACGGCCTGGACGGGGATCGGGTCGC
GGCAATCCGACGGTGGTTTTAACGATTGATGACGGTGAGGAAGATAACGC
CTACAGCGCAGCTATTAAGGGCATCGCGCCGAAGAGAAGTCGCCGAGGGG
GCGGTGGGAACGCGGGCAGCCACAACAAGCGCACAAACACTAACATCAGC
CGAGCGACTGGCTTGGGGGGTGAAGCAGCAGGAATTGATGACGGTGAGGA
AGATAACGCCTACAGCGCAGCTATTAAGGGCATCGCGCCGAAGAGAAGTC
GCCGAGGGGGCGGTGGGAACGCGGGCAGCCACAACAAGCGCACAAACACT
AACATCAGCCGAGCGACTGGCTTGGGGGGTGAAGCAGCAGGA
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