mRNA_D-dudresnayi_contig9698.28480.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9698.28480.1
Unique NamemRNA_D-dudresnayi_contig9698.28480.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Match: D7FH67_ECTSI (Hemerythrin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH67_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.570e-45
Identity = 91/174 (52.30%), Postives = 114/174 (65.52%), Query Frame = 1 
Query:    1 MFVHSRFRASGAFLVQEAEAMQALIASGVVRQETEASAKGVESLFRSLVSKIDKHSDFEDSQLFRFFREHVPEIRDDIRDLEADHSEKQGENQAFALLKGLREG--------GGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPELYATYRTYLVGKYRFVY 498
            MFVH +FR+S   +VQ AE+MQ+ +  G    +TE++   +E   RSL+ K+ KHSDFED+QLF FF+E++P++   IRDLEADHSE    N A   ++ LR          GG   A  QA   V ALK+Y  SLE HLEREER LV RWLNL+ E+YA YRTYLVGKYR VY
Sbjct:    1 MFVHGKFRSSATSIVQAAESMQSGVEGGCSSTKTESAVGKIERSLRSLLGKVAKHSDFEDAQLFLFFKENLPDLEGQIRDLEADHSETNLGNDALDRIRNLRSAPTTAGAVSGGADVASAQAV--VVALKAYAESLEIHLEREERVLVPRWLNLSAEMYAKYRTYLVGKYRLVY 172
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BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Match: A0A6H5JCA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.540e-19
Identity = 54/97 (55.67%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  232 IRDLEADHSEKQGENQAFALLKGLREG--------GGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPELYATYRTYLVGKYRFVY 498
            + DLEADHSE    N+A   ++ LR          GG   A  QA   V ALK+Y  SLE HLEREER LV RWLNL+ E+YA YRTYLVGKYR VY
Sbjct:    4 VLDLEADHSETNLGNEALDRVRNLRSAPTTAGAVSGGADVASAQAV--VVALKAYAESLEIHLEREERVLVARWLNLSAEMYAKYRTYLVGKYRLVY 98
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BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Match: A0A6S8Y349_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8Y349_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.580e-17
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:    1 MFVHSRFRASGAFLVQEAEAMQALIASGVVRQETEASAKGVESLFRSLVSKIDKHSDFEDSQLFRFFREHVPE--IRDDIRDLEADHSEKQGEN---QAF--ALLKGLREGGGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPELYATYRTYLVGKYRFVY 498
            ++VH R+R  GA LV  A+ ++      V  +E +   K ++S +   V K+  HS+FEDSQLF+FF E+V +  +++ + +L+ DHS    +     AF  A L        E  + +  T+ +  +  +   ++ H+ +EE A+V  WLNLT E Y  YRTYL  KY  +Y
Sbjct:  101 LWVHERYRGYGAALVDGAKELEK-----VKEKEVKNKLKALQSAYGKFVKKVQGHSEFEDSQLFKFFLENVQDDTLKEQLEELKKDHSTLDNDETIQNAFEAAFLN-------EVISKDDTTKILELMTKFTEDMDQHMRKEENAIVHHWLNLTEEQYKKYRTYLSWKYAAMY 261
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BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Match: A0A067C703_SAPPC (Hemerythrin domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C703_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 4.190e-9
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:  133 FRSLVSKIDKHSDFEDSQLFRFFREHVPEIRDDIRDLEADHSEKQGENQAFALLKGLREGGGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPELYATYRTYLVGKYRFVY 498
            F + ++++D H +FED++LF++F +++    +D  +LEA H++    +Q    L+ L    G  +  E           Y  SL  HL  EE+ ++ +WLNLTP+ Y  +R+YL  K+   Y
Sbjct:  129 FNAFLTELDDHGNFEDAELFKYFIDNIDGCWEDFEELEAQHADHSMTDQIVHRLEKLIAAQGNVSQAELVELQYNFYLFYRGSL-AHLALEEKMILQKWLNLTPQEYRHFRSYLSWKHILTY 249
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BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Match: A0A7S0RD45_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RD45_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 3.470e-8
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:  133 FRSLVSKIDKHSDFEDSQLFRFFREHVPEI--RDD-------IRDLEADHSEKQG--ENQAFALLKGLREGGGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPELYATYRTYLVGKYRFVY 498
            F  LV+K+ +H +FE+ QLF F+++   ++  +DD       I+ L+ DH  +      +AF      + GG      +Q  +    +++Y    + H+EREE  LV RW+ LT + Y  YRTYL  KY  VY
Sbjct:  157 FEDLVAKMKEHHEFEEKQLFAFYKKEGAKMYAKDDYHQLMAAIKGLQDDHDMRSEIFVRKAFDDYDAKKTGG----KWQQERQIGQQMEAYNIVTKNHMEREETVLVRRWMELTDDQYKLYRTYLSTKYAMVY 285
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BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Match: A0A1V9ZXZ3_9STRA (Hemerythrin domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXZ3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.330e-6
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 1 
Query:   10 HSRFRASGAFLVQEAEAMQALIASGVVRQETEASAKGVESLFRSLVSKIDKHSDFEDSQLFRFFREHVPEIRDDIRDLEADHSEKQGENQAFALLKGLREGGGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPELYATY 462
            H RFRA+    ++E   M A I      Q  +  A  + + F + ++++D H  FED++LF++F +++    +D  +LEA H++    +Q    L+ L    G  +  E           Y  SL  HL  EE+ ++ +WLNLTP+ Y  +
Sbjct:   94 HDRFRAT----MREMVKMIARIPDTASNQRAQL-AYNLGAKFNAFLTELDDHGSFEDAELFKYFIDNIEGCWEDFEELEAQHADHSMTDQIVHRLEKLIAAQGNVSQAELVELQYNFYLFYRGSL-AHLALEEKTILQKWLNLTPQEYRHF 238
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9698.28480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FH67_ECTSI3.570e-4552.30Hemerythrin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JCA2_9PHAE3.540e-1955.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S8Y349_9STRA1.580e-1733.53Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A067C703_SAPPC4.190e-931.15Hemerythrin domain-containing protein n=3 Tax=Sapr... [more]
A0A7S0RD45_9CHLO3.470e-833.08Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A1V9ZXZ3_9STRA2.330e-629.14Hemerythrin domain-containing protein n=1 Tax=Thra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9698contigD-dudresnayi_contig9698:2938..5972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog2880.D7FH67
EggNOG free text desc.Hemerythrin HHE cation binding domain
EggNOG OGs2D5TW@1,2SZNI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHaemerythrin/HHE cation-binding motif
Ec32 orthologEc-13_000960.1
Exons3
Model size832
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9698.28480.1prot_D-dudresnayi_contig9698.28480.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9698 2938..5641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.285963-CDS-D-dudresnayi_contig9698:2937..30271622930922.285963-CDS-D-dudresnayi_contig9698:2937..3027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9698 2938..3027 +
1690557966.6198282-CDS-D-dudresnayi_contig9698:2937..30271690557966.6198282-CDS-D-dudresnayi_contig9698:2937..3027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9698 2938..3027 +
1622930922.3069227-CDS-D-dudresnayi_contig9698:3365..35111622930922.3069227-CDS-D-dudresnayi_contig9698:3365..3511Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9698 3366..3511 +
1690557966.6314952-CDS-D-dudresnayi_contig9698:3365..35111690557966.6314952-CDS-D-dudresnayi_contig9698:3365..3511Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9698 3366..3511 +
1622930922.3295515-CDS-D-dudresnayi_contig9698:5376..56411622930922.3295515-CDS-D-dudresnayi_contig9698:5376..5641Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9698 5377..5641 +
1690557966.6424613-CDS-D-dudresnayi_contig9698:5376..56411690557966.6424613-CDS-D-dudresnayi_contig9698:5376..5641Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9698 5377..5641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.3534198-UTR-D-dudresnayi_contig9698:5641..59721622930922.3534198-UTR-D-dudresnayi_contig9698:5641..5972Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9698 5642..5972 +
1690557966.6528275-UTR-D-dudresnayi_contig9698:5641..59721690557966.6528275-UTR-D-dudresnayi_contig9698:5641..5972Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9698 5642..5972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9698.28480.1

>prot_D-dudresnayi_contig9698.28480.1 ID=prot_D-dudresnayi_contig9698.28480.1|Name=mRNA_D-dudresnayi_contig9698.28480.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=167bp
MFVHSRFRASGAFLVQEAEAMQALIASGVVRQETEASAKGVESLFRSLVS
KIDKHSDFEDSQLFRFFREHVPEIRDDIRDLEADHSEKQGENQAFALLKG
LREGGGEAAAGEQATEAVAALKSYVASLEGHLEREERALVDRWLNLTPEL
YATYRTYLVGKYRFVY*
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mRNA from alignment at D-dudresnayi_contig9698:2938..5972+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9698.28480.1 ID=mRNA_D-dudresnayi_contig9698.28480.1|Name=mRNA_D-dudresnayi_contig9698.28480.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3035bp|location=Sequence derived from alignment at D-dudresnayi_contig9698:2938..5972+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTCGTGCACTCCCGATTCCGTGCGTCGGGCGCGTTTCTCGTGCAAGA
GGCAGAGGCAATGCAAGCGTTGATTGCGTCAGGTGTGGTGGTCCATATGC
CCCCGGCGGGAGATTGCCCTCTCCCAACATAACATTGCGTTGTCGTGTAG
CTTTCACAACGGCAAAAAATATACGGAATAGTAGTAAGTTTTTTGCCGTT
GTTGTTGTTGTTGTTGTCTTGCCAAAAAAAACGGCCTTTCTACCCCACGG
TATCCATTGGTGTACTTCGAGTCTGTATTCATTCTTCTGTCCTAAAAGAG
AGATACGAAACTCTGTAGTCACAAACTAAATATTTACAGACGAGCAAACC
AAAAACACAAGAAAGAGATCCGCAAAAGACACGAAAATAGTTAACTACGT
AAAACGAAACTGAAAATTAGGTGACGAGAGGCAAGAGACAGAGGCATCGG
CGAAGGGCGTCGAGAGCTTGTTCCGGAGCCTCGTATCGAAAATAGACAAG
CACAGCGACTTTGAGGATTCTCAGCTCTTTCGCTTCTTCAGGGAGCACGT
CCCGGAGATAAGAGATGATATCAGGTGCGAAATACGAAAAAGCATCCCCC
CAGATGGCGCTGTGGTGGAGAGGTTCGTGGAAGCATTTTTGTTGTGCGCG
CGCGCACGCGGGGGGGGGGGGGGGGGGGCGCGTTTGTTGTTTTCCCTAGT
CTTTTGACCCTTCACCACCCACCCCTTTCCCGACAGAGCACCNNNNGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTACTCGTTTGTTGCTTTCCC
TAGTCATTTGACCATTCACCACTCATCCCTTTCCAGACAGAGCACCGTTC
CTACTCCTAATAGAGATACCTCCAACATTTGGGCGCTCTTTACGTTTTTG
CCATGTCTTACACAAAAAAGTTTTTGCGTGTCTTATCCCCTTCCTGATTC
GCATTTTGTCGCCACCAAGGATAGCGATCCTTTTCTCGCGACTATCTAGT
TTACCAACGTTCTCCATGTCACGTTCGTCTATTTCTCTCATCTCCTCCCC
CAACACATCCCGTTCCTCGTTGTATAGTTCACAATCTCCCGCGATGTGAA
TTGTATTCTCTTCGGCCTTGCCACAAGGGCTCATCTGTGCATCTTCTTCC
TCCTACTCCCGACTGCTGGTGTACCTCTTTCTTCTGTCTGGCAAGTCCAG
GTCCCCTACACGATATTGCAGTTTCAGCGTTTTCGCGTAGTTCATTGTTT
GGGCCGTGTAAATACGTTTTCATTCCTTTCACTTCTCTTATGCTCCCGTA
TATCTCTAAATGTTCTTCCCCTTCCACCTTGTTTTTTAACGCTAGCCTTT
CCCTTCTTTCTATCTTTTCTTTTACGTCTGTCTTGTACCCCCGAACCTTC
TCGATCGAGAGTATCTCTTCTTGGTTGCCTCCTATTCCCTTCCATAATTT
CTCGAAAACGTTATCCCACCTTATTCGAGATCGCCCTTTTGTTGCTTTCT
CCCATACAAGCCCTATTGACTCTAGCTGGCAACCTCTTTTGTGGCATGCT
CCTTAGTTTATATTATCATTTCAACTTTTTTTTCGCGTCTCTATTTGTTT
TGAAGTGGGTACTTTCCCGGTTCTGCTCTTACAACTATTGGTCGTCGTAT
TTGAGATTCCTAGTACTTTTGTAGCTGCTTTACGAACTTCGCGTTTCCTT
CCCATACTTCTCCTGCATATTTATATAAATACACCCCTTCCAGACGAACA
GTATGTCCACCCCCCCCCGCCCCCCGCACAGCTCACCACGGCCGTAGAAA
TTCGACAAAACCGGCCGCTGGCACATCACTAGTATCACATGTTAGGTATG
ATATTGTCTCGTAGCTAGTTTTTGTTTGCGGTGTGATATCTACCCACGGT
TGTGTTGTCGTCGCCACCCCCCCCCCCCTTCCCCCCCCTCCCCGCAATAA
TGATGTTACTGCTGCCGCTGTTGGTGTCATGTTATGGCGTGTGCTGTGCG
GTGCGGTACGGTGTGGGAAATGTATGGTCGCTCTGCCCATGGCATCCCGA
CCTCGTCCGTCACCCGTGTTGCTTCTGTGGCTAGTTGAGGTTTGATTTTG
CGGCTGGCTGCTCCTTGCGTCGCAATTTTCGTGGCGACAAAGCCATCGCA
TGTATATCATATGATACTATATCATATCATAGCATATCATATCATATAAT
GTAATATAATATCGTATCATACCCCGATAATATGCTTTCCCCGCCCCCGC
CCCCGCTCCCTCCCTGCCCATCGGCCTCCCTTCTTGCCTCCCTGCCTGTC
TTCGGTGCTGCCGAGGTGGCCACCCCACCCCACCCCACCCAACCTAACCC
AACCCAACCCAACCCGCCCCCTTAATGTCGATGCCATAGGGATCTCGAGG
CGGACCACTCCGAAAAACAGGGAGAAAATCAGGCGTTCGCGCTGCTGAAG
GGCCTCCGCGAAGGGGGGGGCGAAGCGGCCGCCGGCGAACAGGCGACGGA
AGCCGTGGCCGCCCTCAAGAGCTATGTCGCCAGCCTCGAGGGACACCTGG
AGAGAGAGGAGAGGGCGCTAGTCGATCGATGGCTCAACCTTACCCCCGAG
CTGTACGCAACGTACAGGACGTACTTGGTGGGGAAGTACCGCTTTGTGTA
CTAGTAGAGCTAACCTTATTGATGTCGTTTTTTTGTTTGGTATAGATTTC
CTCCGTTAAGGGCCCTTTTTTCGATAAAGCATCTGGGGCGGGGGTCACAG
AAGAAGAAATATCGGATCTTAGGGTAACGAGCGCAGTTTGCCGCTGAAGT
CAGTACTATAAATACTCCGCCCCAGATGCGCTTTAGGAAAAAACACGCTT
AGCGGAGGAAGTCTATTGATTTTGGTTTGGTTTGGTTTGTTTTGTTAGAG
GCAGGCTCTGTGGTGTTTTACTGCAAGCAATTGTTGTTTTGGTGACCCTG
TGCTGAGTTTGCAATTTTTGCGTTTAAGAGGGAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9698:2938..5972+

>mRNA_D-dudresnayi_contig9698.28480.1 ID=mRNA_D-dudresnayi_contig9698.28480.1|Name=mRNA_D-dudresnayi_contig9698.28480.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at D-dudresnayi_contig9698:2938..5972+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTCGTGCACTCCCGATTCCGTGCGTCGGGCGCGTTTCTCGTGCAAGA
GGCAGAGGCAATGCAAGCGTTGATTGCGTCAGGTGTGGTGATGTTCGTGC
ACTCCCGATTCCGTGCGTCGGGCGCGTTTCTCGTGCAAGAGGCAGAGGCA
ATGCAAGCGTTGATTGCGTCAGGTGTGGTGAGGCAAGAGACAGAGGCATC
GGCGAAGGGCGTCGAGAGCTTGTTCCGGAGCCTCGTATCGAAAATAGACA
AGCACAGCGACTTTGAGGATTCTCAGCTCTTTCGCTTCTTCAGGGAGCAC
GTCCCGGAGATAAGAGATGATATCAGAGGCAAGAGACAGAGGCATCGGCG
AAGGGCGTCGAGAGCTTGTTCCGGAGCCTCGTATCGAAAATAGACAAGCA
CAGCGACTTTGAGGATTCTCAGCTCTTTCGCTTCTTCAGGGAGCACGTCC
CGGAGATAAGAGATGATATCAGGGATCTCGAGGCGGACCACTCCGAAAAA
CAGGGAGAAAATCAGGCGTTCGCGCTGCTGAAGGGCCTCCGCGAAGGGGG
GGGCGAAGCGGCCGCCGGCGAACAGGCGACGGAAGCCGTGGCCGCCCTCA
AGAGCTATGTCGCCAGCCTCGAGGGACACCTGGAGAGAGAGGAGAGGGCG
CTAGTCGATCGATGGCTCAACCTTACCCCCGAGCTGTACGCAACGTACAG
GACGTACTTGGTGGGGAAGTACCGCTTTGTGTACTAGGGATCTCGAGGCG
GACCACTCCGAAAAACAGGGAGAAAATCAGGCGTTCGCGCTGCTGAAGGG
CCTCCGCGAAGGGGGGGGCGAAGCGGCCGCCGGCGAACAGGCGACGGAAG
CCGTGGCCGCCCTCAAGAGCTATGTCGCCAGCCTCGAGGGACACCTGGAG
AGAGAGGAGAGGGCGCTAGTCGATCGATGGCTCAACCTTACCCCCGAGCT
GTACGCAACGTACAGGACGTACTTGGTGGGGAAGTACCGCTTTGTGTACT
AG
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