mRNA_D-dudresnayi_contig9687.28475.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9687.28475.1
Unique NamemRNA_D-dudresnayi_contig9687.28475.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig9687.28475.1 vs. uniprot
Match: D7FYZ2_ECTSI (GBBH-like_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.240e-23
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 2 
Query:  374 HDAAVDATKLVDTNRTVQVHWDDGHTSNYDFTWLRVNCPSFLHESGQRTVFPGDVDPELRPIK 562
            +D  V +T+++   R V+V WDDGH S +D+TWLRVNCPSFLHESGQRTVFPGDVDP L+P++
Sbjct:   76 NDPKVSSTQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGDVDPGLKPVE 138
[Close]
BLAST of mRNA_D-dudresnayi_contig9687.28475.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.100e-21
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:  374 HDAAVDATKLVDTNRTVQVHWDDGHTSNYDFTWLRVNCPSFLHESGQRTVFPGDVDPELRPIK 562
            +D  V +T+++ + R V+V WDDGH S +D+TWLRVNCPSFLHESGQRT+FPGDVDP L+P++
Sbjct:   74 NDPKVSSTEVLPSERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTLFPGDVDPGLKPVE 136
[Close]
BLAST of mRNA_D-dudresnayi_contig9687.28475.1 vs. uniprot
Match: A0A1Z9SNZ8_9PROT (Gamma-butyrobetaine hydroxylase (Fragment) n=1 Tax=Pelagibacteraceae bacterium TMED258 TaxID=1986820 RepID=A0A1Z9SNZ8_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 3.140e-5
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 2 
Query:  416 RTVQVHWDDGHTSNYDFTWLRVNCPSFLHESGQRTVF 526
            R++Q+ W DG+TS+Y+F WLR NCPS +H + +   F
Sbjct:   15 RSIQIEWSDGNTSDYNFLWLRDNCPSEIHPTARERTF 51
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9687.28475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYZ2_ECTSI1.240e-2365.08GBBH-like_N domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBM7_9PHAE3.100e-2163.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z9SNZ8_9PROT3.140e-548.65Gamma-butyrobetaine hydroxylase (Fragment) n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9687contigD-dudresnayi_contig9687:10547..11108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size562
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.597132-UTR-D-dudresnayi_contig9687:10546..107241622930921.597132-UTR-D-dudresnayi_contig9687:10546..10724Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9687 10547..10724 +
1690557966.3211305-UTR-D-dudresnayi_contig9687:10546..107241690557966.3211305-UTR-D-dudresnayi_contig9687:10546..10724Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9687 10547..10724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.61927-CDS-D-dudresnayi_contig9687:10724..111081622930921.61927-CDS-D-dudresnayi_contig9687:10724..11108Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9687 10725..11108 +
1690557966.3319683-CDS-D-dudresnayi_contig9687:10724..111081690557966.3319683-CDS-D-dudresnayi_contig9687:10724..11108Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9687 10725..11108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9687.28475.1prot_D-dudresnayi_contig9687.28475.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9687 10725..11108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9687.28475.1

>prot_D-dudresnayi_contig9687.28475.1 ID=prot_D-dudresnayi_contig9687.28475.1|Name=mRNA_D-dudresnayi_contig9687.28475.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=128bp
MCYSIIRSYMPATRRLALWPARYLSASKVGLPQATAALLRSTINGRPAPF
ATSSRQHSDIHFSGMHDAAVDATKLVDTNRTVQVHWDDGHTSNYDFTWLR
VNCPSFLHESGQRTVFPGDVDPELRPIK
back to top

mRNA from alignment at D-dudresnayi_contig9687:10547..11108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9687.28475.1 ID=mRNA_D-dudresnayi_contig9687.28475.1|Name=mRNA_D-dudresnayi_contig9687.28475.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at D-dudresnayi_contig9687:10547..11108+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACCGTGAAGGCTGCTAGCATAGTTCTCTTTGCAACGGTGTTCAGCGCAG
CGGGTTGCATCCACGATATCGATTGATCGACACATCTCTCTCTACAACAC
TTGTGTGTCTTGCTTGAGTGTTTCAACGAGTTTGTGTTGTCAATACAACA
GGCAACAAAAAACAGTGTAGTCAGTAGAATGTGTTATTCAATCATCCGTT
CGTACATGCCAGCAACAAGACGTCTTGCGCTCTGGCCTGCGAGGTATCTC
AGTGCAAGTAAGGTAGGGCTACCCCAAGCAACAGCAGCGCTACTGCGCAG
CACGATCAACGGTCGCCCCGCCCCGTTCGCCACGTCATCACGGCAACATA
GCGACATCCACTTTTCTGGGATGCACGACGCTGCGGTGGACGCAACCAAG
CTCGTAGATACCAACCGCACAGTTCAAGTTCACTGGGACGACGGCCATAC
GTCGAACTACGACTTCACGTGGCTGCGGGTAAACTGCCCGTCATTTTTGC
ACGAGAGTGGGCAGCGGACGGTGTTCCCCGGGGATGTGGATCCGGAGCTG
AGACCTATAAAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9687:10547..11108+

>mRNA_D-dudresnayi_contig9687.28475.1 ID=mRNA_D-dudresnayi_contig9687.28475.1|Name=mRNA_D-dudresnayi_contig9687.28475.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at D-dudresnayi_contig9687:10547..11108+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTGTTATTCAATCATCCGTTCGTACATGCCAGCAACAAGACGTCTTGC
GCTCTGGCCTGCGAGGTATCTCAGTGCAAGTAAGGTAGGGCTACCCCAAG
CAACAGCAGCGCTACTGCGCAGCACGATCAACGGTCGCCCCGCCCCGTTC
GCCACGTCATCACGGCAACATAGCGACATCCACTTTTCTGGGATGCACGA
CGCTGCGGTGGACGCAACCAAGCTCGTAGATACCAACCGCACAGTTCAAG
TTCACTGGGACGACGGCCATACGTCGAACTACGACTTCACGTGGCTGCGG
GTAAACTGCCCGTCATTTTTGCACGAGAGTGGGCAGCGGACGGTGTTCCC
CGGGGATGTGGATCCGGAGCTGAGACCTATAAAGATGTGTTATTCAATCA
TCCGTTCGTACATGCCAGCAACAAGACGTCTTGCGCTCTGGCCTGCGAGG
TATCTCAGTGCAAGTAAGGTAGGGCTACCCCAAGCAACAGCAGCGCTACT
GCGCAGCACGATCAACGGTCGCCCCGCCCCGTTCGCCACGTCATCACGGC
AACATAGCGACATCCACTTTTCTGGGATGCACGACGCTGCGGTGGACGCA
ACCAAGCTCGTAGATACCAACCGCACAGTTCAAGTTCACTGGGACGACGG
CCATACGTCGAACTACGACTTCACGTGGCTGCGGGTAAACTGCCCGTCAT
TTTTGCACGAGAGTGGGCAGCGGACGGTGTTCCCCGGGGATGTGGATCCG
GAGCTGAGACCTATAAAG
back to top