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Homology
BLAST of mRNA_D-dudresnayi_contig9687.28473.1 vs. uniprot
Match: A0A6H5K144_9PHAE (Mago-bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K144_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.080e-35 Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 3
Query: 444 AAVVMAVLVFSRALSKRDRAELHGEAERAGGVGSSSHGVGEARFLTLSCSGVDEGRPAQTELELSATKASLARRLFRMAQDQYHSRYERLSHREIREVVAIGGPTAEDHPDLFRLLKK 797
+ V++AVLVF LSKRDRA LHG+AE+AGGV S+SHGVGE RFL L+C GR ELELS KA LAR LFR+AQ +YHSR+E LSHREIREVVA GGPTA+ HPDLF+LL+K
Sbjct: 394 STVLVAVLVFGAELSKRDRAGLHGQAEKAGGVTSASHGVGEGRFLALACR--LGGRAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTADAHPDLFKLLEK 509
BLAST of mRNA_D-dudresnayi_contig9687.28473.1 vs. uniprot
Match: D7FYZ4_ECTSI (Mago-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ4_ECTSI) HSP 1 Score: 145 bits (367), Expect = 1.290e-34 Identity = 79/116 (68.10%), Postives = 90/116 (77.59%), Query Frame = 3
Query: 450 VVMAVLVFSRALSKRDRAELHGEAERAGGVGSSSHGVGEARFLTLSCSGVDEGRPAQTELELSATKASLARRLFRMAQDQYHSRYERLSHREIREVVAIGGPTAEDHPDLFRLLKK 797
V++AVLVF LSKRDRA LH +AE+AGGV +SSHGVGE RFL L+C G ELELS KA LAR LFR+AQ +YHSR+E LSHREIREVVA GGPTAE HPDLF+LL+K
Sbjct: 319 VLVAVLVFGAELSKRDRAGLHSQAEKAGGVANSSHGVGEGRFLALACR--LGGNAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTAEAHPDLFKLLEK 432
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1356 |
| Cds size | 771 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930921.2526119-UTR-D-dudresnayi_contig9687:1865..1978 | 1622930921.2526119-UTR-D-dudresnayi_contig9687:1865..1978 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9687 1866..1978 + |
| 1690557966.2013516-UTR-D-dudresnayi_contig9687:1865..1978 | 1690557966.2013516-UTR-D-dudresnayi_contig9687:1865..1978 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9687 1866..1978 + |
| 1622930921.3394237-UTR-D-dudresnayi_contig9687:4447..4919 | 1622930921.3394237-UTR-D-dudresnayi_contig9687:4447..4919 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9687 4448..4919 + |
| 1690557966.2438643-UTR-D-dudresnayi_contig9687:4447..4919 | 1690557966.2438643-UTR-D-dudresnayi_contig9687:4447..4919 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9687 4448..4919 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9687.28473.1 >prot_D-dudresnayi_contig9687.28473.1 ID=prot_D-dudresnayi_contig9687.28473.1|Name=mRNA_D-dudresnayi_contig9687.28473.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=257bp
MGVKSSCGGATRNETVLIEPRNNDTNNDSDSDNRAGVPVAITKAGYQRRT
TSRRNHSDQMRERSQEGDSIRAVEDQAGGNSSGIAKKEEVRDDEGDNTRE
TREKAETTGMAAVVMAVLVFSRALSKRDRAELHGEAERAGGVGSSSHGVG
EARFLTLSCSGVDEGRPAQTELELSATKASLARRLFRMAQDQYHSRYERL
SHREIREVVAIGGPTAEDHPDLFRLLKKMNDDDASLTSGDPLAHDGVAAV
EMTTTV* back to topmRNA from alignment at D-dudresnayi_contig9687:1866..4919+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9687.28473.1 ID=mRNA_D-dudresnayi_contig9687.28473.1|Name=mRNA_D-dudresnayi_contig9687.28473.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3054bp|location=Sequence derived from alignment at D-dudresnayi_contig9687:1866..4919+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGAGCGACGTCAGGTGCGCAGACGGGCAGGCCGCTGTCGTGGATTTCTTG
AAGAGAAGAGTATGTGACTGCGAACAGGTGGGGACGGAGGTTGAGGAGGA
AGAGGATTGTTGCATGGGCGTCAAGAGCTCATGCGGTGGGGCGACGCGGA
ACGAAACGGTCTTGATTGAACCGCGCAACAACGACACTAACAACGACAGC
GACAGCGACAATAGAGCCGGTGTGCCAGTAGCAATAACTAAGGCAGGATA
TCAGCGGCGCACGACCAGCAGGAGGAATCATAGCGACCAAATGCGTGAGC
GATCACAGGAGGGAGACAGCATCAGGGCAGTGGAAGACCAAGCAGGCGGC
AACAGCAGCGGCATCGCCAAGAAAGAGGAGGTGAGGGACGATGAAGGAGA
TAACACACGCGAGACACGCGAGAAAGCGGAAACGACAGGGATGGCCGCCG
TTGTCATGGCGGTACTGGTATTCAGCAGGGCGTTGTCGAAGAGAGACCGG
GCCGAACTGCACGGCGAAGCGGAGAGGGCCGGCGGGGTTGGAAGTTCCAG
CCACGGAGTCGGAGAAGCGAGGTTTTTGACCCTCTCCTGCTCCGGTGTTG
ATGAGGGTCGACCCGCGCAGACGGAGCTTGAGCTGTCGGCGACCAAGGTA
GGGTTTCATTTGAGGCGTTATAGTTGATATTTATATTTCCGTGTGAATCG
TACACACGGTATTATTCATGAGAACAGTACAACCGCGTGGATGTCCCCTT
CCAACCCTGTCGTCGAGGCTAGCGTTATGTTTGTGTCCCAAGGAGTCGAG
CCTCCCCACTCTCTACGTTATGGGGGTATTTTCACGGATAGATAAGATGC
AGTAGTTTTTGCTTTCTAGTTTTACGAGCGTTGTTTGTTTTTGTTTACCA
TTGATTGCTCTGCCGTTTTTTTCGTTGTTGACCACACTTGGTGTAGGCGT
TTGAGTTATGTTGGTTCATGAGCTTACTTGTTTTCTACGTTTTATTCCAG
CGGCTCTTGTCCCTGCGTCATCCTCGGAAATCCCACGCGAGAGAATGGCA
ACCGTGGACGTATATGCATACGTTCAATTTATGTTTCCCCGACTATTGTA
TGATGCACGTGGCGGACGGCAGTGCGCCTAGAGATTGACCCGCGATTTTT
TCTTTGTGTACCATAGGCCTGTCGGCCACCTCCACGATATGATTGGGTGT
CCGTTGAGAGGTTTCATCCGCATCGTGTGGCCATCTGTACCCGTGCCTCC
CCACAACCGCTTGGACATCACAGTTTCGACAGCGGCTTGTATGATAGGCG
GGCAGAGCGTTCCTCGTGTGTTTTTTTTCGCTTCGCGGTTTCATCGCGGT
GGTTGATTGATTGATTGATTGATTGATTGATTGATTGGTTGGTTGGTTGG
TTGGTTGATTGACTGCGGTCTGCATATCGTCTCCTTCGGCAGTGAAAATT
AATTGATTCAAACGATTATTACATCATAATGTTATCGTCCTATACGGATC
CCGCGATGTTGCCCATCTTCCTATCTTACTTCGAAGTATATCATTCCCAA
TACTGTACGAGTACTGCTGTTTGCGTGGGTATGCACCCGGCGAACAGAGC
GGGGCATGCACCCATGATAGAGGTAGCATAAACACTTTATCAATACACAC
CGATCTCACACGCACACTCTGTCTGCTGTATTACACGGCGACAGGCACAC
GTAGCAAGCACCCTGATGATGATTGTAAAACCGTTTGACTCGAAACATCG
TTCGTCTCACAGGCGAGTCTGGCACGACGATTGTTCCGGATGGCTCAGGA
TCAATACCACTCTCGTTACGAGCGTTTGAGCCATCGGGAGATCAGGTCAG
AGACAAGGCTCCTACGCCTGAAATTACTTTTGGTGTGGTCGGGGTATACG
TGATGCCTTGAAGGACAACCTGCCTGAGACGCCGCCACTGCGAAGAGGCG
TTCCTGTTGCCACGAAACCACCAACGTCCCTCCAGAAATAACGGTGTACG
TTTCGGCCTAATTAACGCAGGCGGCGGCCCGTGTGTGTCCAAGAAAGGAT
GTTTTTTCCGATTGTTATCCATCATCAGTACTGCTTCGGAGTACACGGGT
GCCCGCGAAAGAAAGCGTGGTGCTATTGATAGGCTTCGTGGCACATGTTA
AATGCAATGTGGTAATTTGGGTGTGACGCTTGATTTTTTTTGTTTTTTCA
GTGATGTTTTTTTTCTTATCCTACGTTATGTGTTCTACCCTGTGATCATA
GACTAGCGATTTGGATAGACCAATCGGTTAACGGTGTGATCGATCAATCT
ATCAATCAACCAACCAACCAATCAATCTTTCGCGTCGATTTTTTCCAATC
TATATACTTGTACCATTTTCGTTTTTTTGTTTTTTTGCGGCCATCGCACC
GTCTCGTTTCGTGTGTACGCACCAGCAGGGAAGTGGTTGCGATCGGAGGC
CCCACCGCGGAGGACCACCCAGACCTGTTTCGCCTACTCAAAAAAATGAA
CGACGACGATGCCTCCTTGACGAGCGGTGACCCATTGGCCCACGACGGCG
TTGCTGCAGTAGAAATGACCACTACGGTCTAGGAAGAGTTCGGTCAACCT
GTAGAGGTCGCCGACATAGGGCTACGGGCGCTTTTTCGCGGGATGTATTG
CAACCATGCTCCTGTGTCGCCGACTTGATGCGCTTTTATTTTGAGGGTGG
TTTACGCAGGGGTTCCTACGAACGAAAGACGACTTTCCAAAGGAGAAGCG
CTGTGTGCGGTAGAAAGTGGATATACTTATTCGTGGTGCTTGTTGTGCGC
TTGAGCCGTAGGTCGGCTTTCTCCGGGTATGGGAATGGTGCGCTTGTTTT
CCGTTTTCTGGTGATGATGGTGGTACTTCTCTAAAAGTGGATTTGGTAGT
CGATTGCGCGCTTGCGTGGCGTCGAATGTCTTTGTTCGCGCTGTCCAGTG
CGCGAGAAGAGGGAGAATATTTATGATTGAAGAAACATGCCACCTTTTGC
TTGATGCCGCTTCAAATTCGGACCTCGTTTCGCCGCCGTTTGCTCAAAAC
GACG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9687:1866..4919+ >mRNA_D-dudresnayi_contig9687.28473.1 ID=mRNA_D-dudresnayi_contig9687.28473.1|Name=mRNA_D-dudresnayi_contig9687.28473.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at D-dudresnayi_contig9687:1866..4919+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGCGTCAAGAGCTCATGCGGTGGGGCGACGCGGAACGAAACGGTCTT
GATTGAACCGCGCAACAACGACACTAACAACGACAGCGACAGCGACAATA
GAGCCGGTGTGCCAGTAGCAATAACTAAGGCAGGATATCAGCGGCGCACG
ACCAGCAGGAGGAATCATAGCGACCAAATGCGTGAGCGATCACAGGAGGG
AGACAGCATCAGGGCAGTGGAAGACCAAGCAGGCGGCAACAGCAGCGGCA
TCGCCAAGAAAGAGGAGGTGAGGGACGATGAAGGAGATAACACACGCGAG
ACACGCGAGAAAGCGGAAACGACAGGGATGGCCGCCGTTGTCATGGCGGT
ACTGGTATTCAGCAGGGCGTTGTCGAAGAGAGACCGGGCCGAACTGCACG
GCGAAGCGGAGAGGGCCGGCGGGGTTGGAAGTTCCAGCCACGGAGTCGGA
GAAGCGAGGTTTTTGACCCTCTCCTGCTCCGGTGTTGATGAGGGTCGACC
CGCGCAGACGGAGCTTGAGCTGTCGGCGACCAAGATGGGCGTCAAGAGCT
CATGCGGTGGGGCGACGCGGAACGAAACGGTCTTGATTGAACCGCGCAAC
AACGACACTAACAACGACAGCGACAGCGACAATAGAGCCGGTGTGCCAGT
AGCAATAACTAAGGCAGGATATCAGCGGCGCACGACCAGCAGGAGGAATC
ATAGCGACCAAATGCGTGAGCGATCACAGGAGGGAGACAGCATCAGGGCA
GTGGAAGACCAAGCAGGCGGCAACAGCAGCGGCATCGCCAAGAAAGAGGA
GGTGAGGGACGATGAAGGAGATAACACACGCGAGACACGCGAGAAAGCGG
AAACGACAGGGATGGCCGCCGTTGTCATGGCGGTACTGGTATTCAGCAGG
GCGTTGTCGAAGAGAGACCGGGCCGAACTGCACGGCGAAGCGGAGAGGGC
CGGCGGGGTTGGAAGTTCCAGCCACGGAGTCGGAGAAGCGAGGTTTTTGA
CCCTCTCCTGCTCCGGTGTTGATGAGGGTCGACCCGCGCAGACGGAGCTT
GAGCTGTCGGCGACCAAGGCGAGTCTGGCACGACGATTGTTCCGGATGGC
TCAGGATCAATACCACTCTCGTTACGAGCGTTTGAGCCATCGGGAGATCA
GGCGAGTCTGGCACGACGATTGTTCCGGATGGCTCAGGATCAATACCACT
CTCGTTACGAGCGTTTGAGCCATCGGGAGATCAGGGAAGTGGTTGCGATC
GGAGGCCCCACCGCGGAGGACCACCCAGACCTGTTTCGCCTACTCAAAAA
AATGAACGACGACGATGCCTCCTTGACGAGCGGTGACCCATTGGCCCACG
ACGGCGTTGCTGCAGTAGAAATGACCACTACGGTCTAGGGAAGTGGTTGC
GATCGGAGGCCCCACCGCGGAGGACCACCCAGACCTGTTTCGCCTACTCA
AAAAAATGAACGACGACGATGCCTCCTTGACGAGCGGTGACCCATTGGCC
CACGACGGCGTTGCTGCAGTAGAAATGACCACTACGGTCTAG back to top
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