mRNA_D-dudresnayi_contig9686.28472.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9686.28472.1
Unique NamemRNA_D-dudresnayi_contig9686.28472.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: D7FJV0_ECTSI (Ribosome production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 1.920e-90
Identity = 132/150 (88.00%), Postives = 145/150 (96.67%), Query Frame = 1
Query:    1 GELPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            GEL GLAKRVGSKPAFVFSGEKWGREEAYRKLQNLL+DFFRGQVV++VAL GLDHC+VCTAA+DKV++RHYH+GF+RSGSKIPSV L+EMGPSLD+ IRRTSFAA+DLWKASVKKPRVAETRK KN+SANQFGDKLGRIHLGRQDLSSMK
Sbjct:  128 GELAGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLLDFFRGQVVNEVALAGLDHCVVCTAAQDKVYVRHYHIGFQRSGSKIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPRVAETRKTKNVSANQFGDKLGRIHLGRQDLSSMK 277          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: A0A7S2UZD7_9STRA (Ribosome production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.410e-55
Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 1
Query:   22 KRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            KR+GSKP  VF G++W  E   + L+NLL+DFFRG  VD VAL GLDH + CTA   KV+LRHYH+ FK+SG KIP V LE  GPSLD+V+RR+   + DLW+A+ K+P+    +KVKN++ N+ GDK+GRIHLGRQDLSSMK
Sbjct:  138 KRIGSKPCIVFQGDEWEVEGPLKSLKNLLLDFFRGDEVDSVALPGLDHVMACTAVGGKVYLRHYHIAFKKSGGKIPRVQLESTGPSLDLVLRRSKLPSPDLWRAACKQPKQLRPKKVKNVTKNEMGDKVGRIHLGRQDLSSMK 280          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: A0A835ZC15_9STRA (Ribosome production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.480e-54
Identity = 90/149 (60.40%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    4 ELPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAED-KVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSM 447
            E  G AKRVGSKPA +F G+ W  EE YRKL+NLLIDFFRG VVD V+L GLDH +V TA E   + LRHY + FKRSG+K+P + LE MGP  D+V+RR  FAA DLWK + +KP+  + +KVKN+++N F + +GRIHLGRQDLSSM
Sbjct:  129 EFRGSAKRVGSKPAMLFEGDLWENEEKYRKLRNLLIDFFRGDVVDSVSLAGLDHVMVVTAVEGGPILLRHYLIAFKRSGTKVPHIQLERMGPHADLVLRRVKFAATDLWKVATRKPKQLKPKKVKNVTSNTF-ETVGRIHLGRQDLSSM 276          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: UPI001458B1DE (ribosome production factor 2 homolog n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458B1DE)

HSP 1 Score: 161 bits (407), Expect = 5.020e-46
Identity = 75/149 (50.34%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    4 ELPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            E+ G     GSKP  +F+GE + ++  +R+L+NL IDFFRG +V  + L GL+H I  TA + K+ LR+Y +  K+SGSK P V LE+MGPSLD VIRRT  A+ DL+K S+++P+ A+ RK+KN+S N FG KLGRIH+ +QDL  ++
Sbjct:  128 EMQGAKSNTGSKPCLLFAGEAFDQDTEHRRLKNLFIDFFRGPIVSQLRLAGLEHVIQITALDGKILLRNYKIKMKKSGSKTPRVELEDMGPSLDFVIRRTKLASDDLYKRSLRQPKTAKPRKIKNVSHNPFGSKLGRIHMDKQDLGKLQ 276          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: A0A5D6XJV5_9STRA (Ribosome production factor 2 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJV5_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.640e-43
Identity = 78/144 (54.17%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   22 KRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQF-GDKLGRIHLGRQDLSSMK 450
            K  GSKP FVF+G++W  +EA++KLQNLLID FRG +V+ V + GLDH IVCTA +DKV  R Y V FK++ +  P V LEEMGP  D+  RR  FA+ DL KA+ KKP+    +KVKN+S ++  GDKLGRIH+ R D+ +M+
Sbjct:  168 KAPGSKPCFVFAGDQWESQEAFQKLQNLLIDMFRGTIVESVNVKGLDHVIVCTAWKDKVFFRSYSVDFKKADAH-PRVELEEMGPRFDLAFRRHKFASADLLKAATKKPKGLAPKKVKNVSRDELTGDKLGRIHIDRADIYTMQ 310          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: A0A8K1FC18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC18_PYTOL)

HSP 1 Score: 153 bits (387), Expect = 7.960e-43
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   22 KRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQF-GDKLGRIHLGRQDLSSMK 450
            K  GSKPAFVF+G++W   E + KL+NLLID FRG V++ + + G+DH IVCTA ++KV  R Y + FK++    P V LEEMGP  D+  RR   A+ DL KA+ KKP+    +K+KNIS ++  GDKLGRIHLG+QD+ SM+
Sbjct:  168 KAPGSKPAFVFTGDQWESNETFAKLKNLLIDVFRGTVIEQINVKGIDHAIVCTAWKEKVFFRSYSIDFKKADGVHPRVELEEMGPRFDLHFRRQKLASADLMKAATKKPKGLAPKKIKNISRDELTGDKLGRIHLGKQDIYSMQ 311          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: A0A210QTB5_MIZYE (Ribosome production factor 2 homolog n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QTB5_MIZYE)

HSP 1 Score: 151 bits (381), Expect = 3.910e-42
Identity = 71/148 (47.97%), Postives = 103/148 (69.59%), Query Frame = 1
Query:    7 LPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            + G    +GSKP  +F GE + ++  +++L+NL IDFFRG V+  V L GL+H I  T+ + K+ LR+Y +  K+SGSK P V L++MGPS+D VIRRT  A+ DL+K S+++P+  + RK KNIS N FG KLGRIH+ +QDL  ++
Sbjct:  129 MQGAKCNMGSKPCLLFCGEAFDQDAEHKRLKNLFIDFFRGPVISQVRLAGLEHVIQITSLDGKILLRNYKIMMKKSGSKTPRVELDDMGPSIDFVIRRTKLASDDLYKRSLRQPKTVKPRKRKNISQNAFGSKLGRIHMDKQDLGKLQ 276          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: UPI001E1E049A (ribosome production factor 2 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E049A)

HSP 1 Score: 150 bits (378), Expect = 3.960e-42
Identity = 66/149 (44.30%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    4 ELPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            ++ G    +G+KP  +F+GE++  +  Y +L+NL  DFFRG V+  + L G++H I+ +A + K+++R+Y +  K+SGSK+P + LE+MGPS+D  +RRT  A+ DL+K S+KKP+ A  +K KNIS + FG +LGRIH+ +QDLS+++
Sbjct:   96 DIEGPKCPIGTKPCIMFAGEQFDTDPDYSRLKNLFADFFRGSVIKQIRLQGIEHVIMISAVDGKIYIRNYRILLKKSGSKVPRIELEDMGPSVDFTVRRTKIASDDLYKRSLKKPKTATIKKRKNISQDAFGSQLGRIHMQKQDLSNLQ 244          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: A0A2T7P400_POMCA (Ribosome production factor 2 homolog n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7P400_POMCA)

HSP 1 Score: 151 bits (381), Expect = 4.100e-42
Identity = 72/149 (48.32%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    4 ELPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            E  G     G KP  VFSG+ + ++  Y++++NL  DFF+G VVD+V L GL+H I  TA+  K ++R+Y +  K+SGS+ P V LE+MGPSLD+V+RRT  A+ DL++ ++K+P+ A+ RK+KNIS + FG KLGRIH+ +QDLS ++
Sbjct:  133 EFKGEKCVFGVKPCLVFSGQAFEQDSEYQRIRNLFTDFFKGPVVDNVRLAGLEHVISVTASGRKFYIRNYRILLKKSGSRTPRVELEDMGPSLDLVMRRTKLASDDLFRRALKQPKTAKPRKIKNISHDAFGSKLGRIHMTKQDLSKLQ 281          
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Match: UPI0001CBAF5D (ribosome production factor 2 homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBAF5D)

HSP 1 Score: 150 bits (379), Expect = 4.430e-42
Identity = 72/140 (51.43%), Postives = 106/140 (75.71%), Query Frame = 1
Query:   31 GSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVALVGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRRTSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK 450
            GSKP  VFSGE + ++  +++L++LL+DFFRG VV +V L GL+H +   A + K++LR Y +  K+SGS+ P V LEE+GPSLD+V+RRT  AA DL+K S+K+P+ A+ RKVKN+S + FG K GRIH+ +QDL++++
Sbjct:  130 GSKPCLVFSGEPFEQDTEHKRLKSLLVDFFRGPVVTNVRLAGLEHALHFVAIDGKIYLRSYRIILKKSGSRTPRVELEEIGPSLDLVMRRTRLAADDLFKKSMKQPKEAKIRKVKNVSRDVFGTKHGRIHMQKQDLNTLQ 269          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9686.28472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJV0_ECTSI1.920e-9088.00Ribosome production factor 2 homolog n=2 Tax=Ectoc... [more]
A0A7S2UZD7_9STRA3.410e-5559.44Ribosome production factor 2 homolog n=1 Tax=Fibro... [more]
A0A835ZC15_9STRA1.480e-5460.40Ribosome production factor 2 homolog n=1 Tax=Tribo... [more]
UPI001458B1DE5.020e-4650.34ribosome production factor 2 homolog n=2 Tax=Pecte... [more]
A0A5D6XJV5_9STRA6.640e-4354.17Ribosome production factor 2 homolog n=1 Tax=Pythi... [more]
A0A8K1FC18_PYTOL7.960e-4352.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A210QTB5_MIZYE3.910e-4247.97Ribosome production factor 2 homolog n=1 Tax=Mizuh... [more]
UPI001E1E049A3.960e-4244.30ribosome production factor 2 homolog n=1 Tax=Merce... [more]
A0A2T7P400_POMCA4.100e-4248.32Ribosome production factor 2 homolog n=2 Tax=Pomac... [more]
UPI0001CBAF5D4.430e-4251.43ribosome production factor 2 homolog n=1 Tax=Sacco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9686contigD-dudresnayi_contig9686:8217..11029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.9
Seed ortholog evalue5.4e-72
Seed eggNOG ortholog2880.D7FJV0
KEGG koko:K14847
GOsGO:0000027,GO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004611,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008964,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016829,GO:0016830,GO:0016831,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0099402,GO:1901360,GO:1901363
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG5106@1,KOG3031@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size453
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9686.28472.1prot_D-dudresnayi_contig9686.28472.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9686 8219..11029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.085587-CDS-D-dudresnayi_contig9686:8218..83151622930921.085587-CDS-D-dudresnayi_contig9686:8218..8315Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 8219..8315 -
1690557966.1392102-CDS-D-dudresnayi_contig9686:8218..83151690557966.1392102-CDS-D-dudresnayi_contig9686:8218..8315Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 8219..8315 -
1622930921.111133-CDS-D-dudresnayi_contig9686:8836..89461622930921.111133-CDS-D-dudresnayi_contig9686:8836..8946Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 8837..8946 -
1690557966.1546247-CDS-D-dudresnayi_contig9686:8836..89461690557966.1546247-CDS-D-dudresnayi_contig9686:8836..8946Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 8837..8946 -
1622930921.1328166-CDS-D-dudresnayi_contig9686:9453..95841622930921.1328166-CDS-D-dudresnayi_contig9686:9453..9584Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 9454..9584 -
1690557966.167425-CDS-D-dudresnayi_contig9686:9453..95841690557966.167425-CDS-D-dudresnayi_contig9686:9453..9584Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 9454..9584 -
1622930921.1552653-CDS-D-dudresnayi_contig9686:10917..110291622930921.1552653-CDS-D-dudresnayi_contig9686:10917..11029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 10918..11029 -
1690557966.189181-CDS-D-dudresnayi_contig9686:10917..110291690557966.189181-CDS-D-dudresnayi_contig9686:10917..11029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9686 10918..11029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9686.28472.1

>prot_D-dudresnayi_contig9686.28472.1 ID=prot_D-dudresnayi_contig9686.28472.1|Name=mRNA_D-dudresnayi_contig9686.28472.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=150bp
GELPGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLIDFFRGQVVDDVAL
VGLDHCIVCTAAEDKVHLRHYHVGFKRSGSKIPSVALEEMGPSLDIVIRR
TSFAARDLWKASVKKPRVAETRKVKNISANQFGDKLGRIHLGRQDLSSMK
back to top

mRNA from alignment at D-dudresnayi_contig9686:8217..11029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9686.28472.1 ID=mRNA_D-dudresnayi_contig9686.28472.1|Name=mRNA_D-dudresnayi_contig9686.28472.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2813bp|location=Sequence derived from alignment at D-dudresnayi_contig9686:8217..11029- (Desmarestia dudresnayi DdudBR16 monoicous)
GGCGAGCTGCCGGGGCTCGCGAAGCGCGTGGGGTCAAAGCCGGCGTTTGT GTTCTCGGGGGAGAAATGGGGCAGGGAGGAGGCCTACCGGAAACTTCAAA ACCTTTTGATAGGTGTGTGTTTGTGTGTGTTGGTGTTTTTGGTTTTCTCA GGCCGGCCGTGGAGCATTTTGTGTTAAAAGCCGACGGCTCTTTCCTCTGT GCCGTATTGTTCGTGTCATTGTAGATACGTCTGTGGTTCGTCTGTTTGAC GGCATGGCTTTGATACCATGTGTTTTTTTTGTCAAGCAAGCCGGCAGAGC ACTCCTGCTCGCTACTCGCTACGACCCGTTTGTGTTGCGCCTCTGTCGCT ATATTAGCGCTAGGGTGATAATCGCCACTCCCAAGATGGAGAGGGTGAGT TCATAGTTACTTCATCCGTCGGTATTATATCGTTCAGCAAGGGAGCAACC GAGCCCAAGTGGAAACCATAGAGCGGGCTAAGGCTATTTTTTTTGAGGCA GTCTCAGGCGTGGTTGTGCATCTACGAGGGTGTCACTGATGTTCTGTTGC TTTAATACATTTTATTGGATTCCACCTGATGTGCATGTGTGTGTGTGTAT TGTCCCGTCTCAATGCGAGCACGCGGCTCTTGCGTTCGTGTCGGTGCCAT CGTTGATGTTTTCATGCCGTTTTATCGTGGGAGTCTACAATGGTGTTGGT CTTGTTTATTCATTGCGGTCGGCGCTGAGGCAATTAGGAATGTTGGATGC TGTTGTCGAAACCTGTTCTCGTCGCGGACGGCGGCAAAAGCGGGAGACGG TTGGGATATCTCCGTCGGCTAGGGCAAGGGTGCATAGTGCCGACCGCGGC TTGTGTTTGAAACGCTTTGCCGCAGTTCAACACAATGTTTCGCTGGCGGG TCCTGATCTAGATTTTTTTTTTTTTTTTTTTTGTTCTCTACGTGACTGCA GCATCGAACCTATCCACCTCTTGCAAACCACAGAGCCCAGCGATTCTCCC TGTGCAGCTATTATGGCTCAGCTCCCCAGCCCGAACACGTGTAGGAGGTC GTAGCTTCGTTTGCTTCCCACCGTCTCACCTTCAAACCTCGCTTTCCCGG GGGCGACGGCTTGCAGGGCGTGGTCGCTCCGCTAGAGCCGCAACCCTTGC GATCGATTGATCGGCGTTTCCGGTCGAAGAAAAGTGTAGCCCAGTGTTCC GCCACAGATGAATAGTTCGTCGACGATGCCTGCAGTGGTTTATCGGGCCG AGCGGTCTTACGTCACCGTTTTTAGTCGTGTATTGCGTTAGCGCGGGGGG GGGGGGGGGGGTACACCTGATATTTATGTGAGACTCTTGCATTATTTGTA CCCGATTCGTGATGTTGTACACTATGCCAGTCGTATTTTACCTAGTGTGA CTCTTTAACTACACGCGCTGTTTGGCCTCTTGTGCTGTGCTGCAGACTTT TTCCGTGGGCAAGTGGTGGACGACGTGGCCTTGGTGGGGCTGGACCACTG CATCGTCTGCACGGCGGCTGAGGACAAGGTTCACCTCCGTCACTATCACG TCGGCTTCAAGCGCTCGGGGTCAAAGGTCGGTCGTGGGTGTCTGCTGCAT TCACTACAGTAGTCACGGCCAGGTATAGCGGGTCGGGGACCTTTTGTTCT GATTGGATGTCGTGGTGTTACGTTATCAACTATGATATTATAGTCCACTT GTCCTCTTTTGTACACAAGAGTACATATGAAGCTGGGCGGAATATGTTCT CATTTTCTTTTGGTGCTACGTAAAGCGTGTGTGTGTGTGTGTGTTTTTTT GCAGCAGATGTCGTGGCTTGAACAGAGACGCAAGGCGGTCTGCGTTGTGG CGCTTGTCCTGTCGATCCACCGTAGTACTCTCTTGCACGGTTTGACAACC ATGGTTGGCAACAGCGCGATGTTTCGTTTAACCTTGAACGTAATACGGCA TTTCCGAAAGTTTTTTTATTACTCAATATCTGTCGAAACGCCGATTCGGC GATTATATCTGATTGTGTGACGTCACATACCCCCCTTTTTTCGTGTTTTT GGTGTTTTGGCGTGTTTTGGCGCCAACAATCAGATCCCGAGCGTTGCTTT GGAAGAGATGGGGCCGTCGTTGGACATAGTCATCCGACGCACCAGCTTTG CCGCGAGGGACCTGTGGAAAGCTTCCGTCAAGAAGCCCAGAGTGTGAGTG GGCTACCTCATAATACACGACGTTTTGCCACGGTTTTGGACGAAAACGAT GAAGAACTTTTAAAGTCGAGGCTCTTGTATTTTTTTCGGTGCTGGCCTTG GCAAAGGTGTAAATTGGGAGTTGGCAAGTCGATGAATGCGTTTCTCTGTG GCAATAATATGTAGTTCAAGAGTGTGCCGTGTCAACTTGTGGGGGTTGGC CTACGAGACGGACGACACTTGTGGAGGGTAGGCGTCGGTTGAGAATATCG AAGGACTGGGTGCATACGCTGTCTGTCTATATGGTATCCTGTAGTGTTTT AATTTTTCACATGCGTGTAACAGGGTTTCCATCTCTGAAATGCTCTAGCT GGGTAGCCATAGGTATGGTAGAAGTCCATGAAGAACCGGTATAATACCTT GTACCGTAAAATAGATACCTTCATGAGTATGCAGTGTGCATGATTTCGTT GTATGACGAACCTGTTTTGGAAACATATTCGATTGATCCGCTTTCTTTTT TTGCTTTCAAGCAGCGCGGAGACAAGGAAGGTCAAGAACATTTCCGCAAA CCAGTTCGGAGACAAGCTGGGACGCATCCACCTCGGGCGACAGGACCTGT CCAGCATGAAGGT
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9686:8217..11029-

>mRNA_D-dudresnayi_contig9686.28472.1 ID=mRNA_D-dudresnayi_contig9686.28472.1|Name=mRNA_D-dudresnayi_contig9686.28472.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at D-dudresnayi_contig9686:8217..11029- (Desmarestia dudresnayi DdudBR16 monoicous)
GGCGAGCTGCCGGGGCTCGCGAAGCGCGTGGGGTCAAAGCCGGCGTTTGT
GTTCTCGGGGGAGAAATGGGGCAGGGAGGAGGCCTACCGGAAACTTCAAA
ACCTTTTGATAGGGCGAGCTGCCGGGGCTCGCGAAGCGCGTGGGGTCAAA
GCCGGCGTTTGTGTTCTCGGGGGAGAAATGGGGCAGGGAGGAGGCCTACC
GGAAACTTCAAAACCTTTTGATAGACTTTTTCCGTGGGCAAGTGGTGGAC
GACGTGGCCTTGGTGGGGCTGGACCACTGCATCGTCTGCACGGCGGCTGA
GGACAAGGTTCACCTCCGTCACTATCACGTCGGCTTCAAGCGCTCGGGGT
CAAAGACTTTTTCCGTGGGCAAGTGGTGGACGACGTGGCCTTGGTGGGGC
TGGACCACTGCATCGTCTGCACGGCGGCTGAGGACAAGGTTCACCTCCGT
CACTATCACGTCGGCTTCAAGCGCTCGGGGTCAAAGATCCCGAGCGTTGC
TTTGGAAGAGATGGGGCCGTCGTTGGACATAGTCATCCGACGCACCAGCT
TTGCCGCGAGGGACCTGTGGAAAGCTTCCGTCAAGAAGCCCAGAGTATCC
CGAGCGTTGCTTTGGAAGAGATGGGGCCGTCGTTGGACATAGTCATCCGA
CGCACCAGCTTTGCCGCGAGGGACCTGTGGAAAGCTTCCGTCAAGAAGCC
CAGAGTCGCGGAGACAAGGAAGGTCAAGAACATTTCCGCAAACCAGTTCG
GAGACAAGCTGGGACGCATCCACCTCGGGCGACAGGACCTGTCCAGCATG
AAGCGCGGAGACAAGGAAGGTCAAGAACATTTCCGCAAACCAGTTCGGAG
ACAAGCTGGGACGCATCCACCTCGGGCGACAGGACCTGTCCAGCATGAAG
back to top