mRNA_D-dudresnayi_contig9681.28469.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9681.28469.1
Unique NamemRNA_D-dudresnayi_contig9681.28469.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9681.28469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9681contigD-dudresnayi_contig9681:9552..9989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size440
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.6348345-CDS-D-dudresnayi_contig9681:9551..99891622930920.6348345-CDS-D-dudresnayi_contig9681:9551..9989Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9681 9552..9989 +
1690557965.943747-CDS-D-dudresnayi_contig9681:9551..99891690557965.943747-CDS-D-dudresnayi_contig9681:9551..9989Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9681 9552..9989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9681.28469.1prot_D-dudresnayi_contig9681.28469.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9681 9552..9989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9681.28469.1

>prot_D-dudresnayi_contig9681.28469.1 ID=prot_D-dudresnayi_contig9681.28469.1|Name=mRNA_D-dudresnayi_contig9681.28469.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=146bp
TKSWCGWVKCHTHAHARTHTQHGPTSGLLIINQSIKINVIIKGKINPSIK
FATRRTHAMYLLLRDMQQNIYGSTLTHRHPRYVQATRKKSSRFIHIHTCI
DGAMDGTDLSQQPTPAMPTTYSSSSYRQTVKSYHPFRRSRRYVFQP
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mRNA from alignment at D-dudresnayi_contig9681:9552..9989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9681.28469.1 ID=mRNA_D-dudresnayi_contig9681.28469.1|Name=mRNA_D-dudresnayi_contig9681.28469.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at D-dudresnayi_contig9681:9552..9989+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTAAATCCTGGTGCGGTTGGGTGAAATGTCACACACACGCACACGCACG
TACGCACACACAACACGGACCAACAAGCGGCCTTCTCATCATCAATCAAT
CAATCAAAATCAATGTGATAATAAAAGGAAAAATCAACCCATCAATCAAG
TTCGCCACGAGGAGGACGCATGCCATGTACTTGCTGCTGCGTGATATGCA
ACAAAACATTTATGGCAGTACACTCACCCACCGCCACCCTCGATATGTTC
AGGCTACCCGAAAAAAAAGTAGTAGATTCATACATATACATACGTGCATC
GACGGTGCTATGGACGGTACAGATCTATCGCAACAGCCAACCCCCGCCAT
GCCCACTACATATAGCAGCAGCTCGTACCGCCAAACCGTCAAGTCATACC
ACCCTTTCCGAAGATCGCGTAGATATGTCTTCCAGCCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9681:9552..9989+

>mRNA_D-dudresnayi_contig9681.28469.1 ID=mRNA_D-dudresnayi_contig9681.28469.1|Name=mRNA_D-dudresnayi_contig9681.28469.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at D-dudresnayi_contig9681:9552..9989+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTAAATCCTGGTGCGGTTGGGTGAAATGTCACACACACGCACACGCACG
TACGCACACACAACACGGACCAACAAGCGGCCTTCTCATCATCAATCAAT
CAATCAAAATCAATGTGATAATAAAAGGAAAAATCAACCCATCAATCAAG
TTCGCCACGAGGAGGACGCATGCCATGTACTTGCTGCTGCGTGATATGCA
ACAAAACATTTATGGCAGTACACTCACCCACCGCCACCCTCGATATGTTC
AGGCTACCCGAAAAAAAAGTAGTAGATTCATACATATACATACGTGCATC
GACGGTGCTATGGACGGTACAGATCTATCGCAACAGCCAACCCCCGCCAT
GCCCACTACATATAGCAGCAGCTCGTACCGCCAAACCGTCAAGTCATACC
ACCCTTTCCGAAGATCGCGTAGATATGTCTTCCAGCCCACTAAATCCTGG
TGCGGTTGGGTGAAATGTCACACACACGCACACGCACGTACGCACACACA
ACACGGACCAACAAGCGGCCTTCTCATCATCAATCAATCAATCAAAATCA
ATGTGATAATAAAAGGAAAAATCAACCCATCAATCAAGTTCGCCACGAGG
AGGACGCATGCCATGTACTTGCTGCTGCGTGATATGCAACAAAACATTTA
TGGCAGTACACTCACCCACCGCCACCCTCGATATGTTCAGGCTACCCGAA
AAAAAAGTAGTAGATTCATACATATACATACGTGCATCGACGGTGCTATG
GACGGTACAGATCTATCGCAACAGCCAACCCCCGCCATGCCCACTACATA
TAGCAGCAGCTCGTACCGCCAAACCGTCAAGTCATACCACCCTTTCCGAA
GATCGCGTAGATATGTCTTCCAGCCC
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