mRNA_D-dudresnayi_contig9678.28466.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9678.28466.1
Unique NamemRNA_D-dudresnayi_contig9678.28466.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9678.28466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9678contigD-dudresnayi_contig9678:583..1224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9678.28466.1prot_D-dudresnayi_contig9678.28466.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9678 753..1100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.1300132-UTR-D-dudresnayi_contig9678:582..7521622930920.1300132-UTR-D-dudresnayi_contig9678:582..752Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9678 583..752 +
1690557965.8294456-UTR-D-dudresnayi_contig9678:582..7521690557965.8294456-UTR-D-dudresnayi_contig9678:582..752Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9678 583..752 +
1622930920.1703243-UTR-D-dudresnayi_contig9678:1100..12241622930920.1703243-UTR-D-dudresnayi_contig9678:1100..1224Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9678 1101..1224 +
1690557965.8520696-UTR-D-dudresnayi_contig9678:1100..12241690557965.8520696-UTR-D-dudresnayi_contig9678:1100..1224Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9678 1101..1224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.151548-CDS-D-dudresnayi_contig9678:752..11001622930920.151548-CDS-D-dudresnayi_contig9678:752..1100Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9678 753..1100 +
1690557965.841342-CDS-D-dudresnayi_contig9678:752..11001690557965.841342-CDS-D-dudresnayi_contig9678:752..1100Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9678 753..1100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9678.28466.1

>prot_D-dudresnayi_contig9678.28466.1 ID=prot_D-dudresnayi_contig9678.28466.1|Name=mRNA_D-dudresnayi_contig9678.28466.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=116bp
MCKLEEYDGTQSVHRRSSISGSFVNPECTNVSTRNAGGLGMASGSRPRRA
EFLCVFSLCVSKHTQNNRRSPQQEPAFFVYLFAGFTLSRLILQYTTTAAL
TIHVFLPKHRPEAGE*
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mRNA from alignment at D-dudresnayi_contig9678:583..1224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9678.28466.1 ID=mRNA_D-dudresnayi_contig9678.28466.1|Name=mRNA_D-dudresnayi_contig9678.28466.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=642bp|location=Sequence derived from alignment at D-dudresnayi_contig9678:583..1224+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGGCTTAATCTAGGGACGGATACGGATCTCATGCGGTCGCTGGGCGGC
AGTGCTCGGCAAGCAGGACCCTTGACCCACGGCTTCTGACGGAAGGCGGT
TGTATTGATTGGCGATCTTGGTGGGATAGTAGTGAAGCGGTCGTCTGGAC
TGTACTGTGAGGTGTTCCGCATGTGTAAACTTGAAGAATACGATGGTACA
CAAAGCGTTCACAGAAGAAGCAGCATTTCCGGATCCTTCGTGAATCCGGA
GTGTACCAATGTTTCGACCCGGAACGCAGGTGGCCTTGGGATGGCGTCGG
GATCCCGCCCGAGAAGAGCCGAATTTTTGTGTGTGTTCTCCTTGTGTGTG
TCCAAACATACGCAAAACAATAGGAGGAGTCCACAACAAGAGCCAGCTTT
TTTCGTGTATTTATTTGCAGGCTTTACACTTAGTAGGCTCATTCTACAGT
ATACAACAACAGCAGCACTCACCATCCATGTGTTTTTGCCTAAGCACAGG
CCCGAGGCAGGGGAGTGAGATGGTACGATGCCAGAGCTAAAGATAGATAG
ATGGCGTGGGAGTATGGGGAGCAGGGCTGTTGAGACAGTTGGGGACGTGT
ACGCGTAGGAAAGGAATCTGTGAAAAAAACGTCGGCAACGAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9678:583..1224+

>mRNA_D-dudresnayi_contig9678.28466.1 ID=mRNA_D-dudresnayi_contig9678.28466.1|Name=mRNA_D-dudresnayi_contig9678.28466.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at D-dudresnayi_contig9678:583..1224+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTGTAAACTTGAAGAATACGATGGTACACAAAGCGTTCACAGAAGAAG
CAGCATTTCCGGATCCTTCGTGAATCCGGAGTGTACCAATGTTTCGACCC
GGAACGCAGGTGGCCTTGGGATGGCGTCGGGATCCCGCCCGAGAAGAGCC
GAATTTTTGTGTGTGTTCTCCTTGTGTGTGTCCAAACATACGCAAAACAA
TAGGAGGAGTCCACAACAAGAGCCAGCTTTTTTCGTGTATTTATTTGCAG
GCTTTACACTTAGTAGGCTCATTCTACAGTATACAACAACAGCAGCACTC
ACCATCCATGTGTTTTTGCCTAAGCACAGGCCCGAGGCAGGGGAGTGAAT
GTGTAAACTTGAAGAATACGATGGTACACAAAGCGTTCACAGAAGAAGCA
GCATTTCCGGATCCTTCGTGAATCCGGAGTGTACCAATGTTTCGACCCGG
AACGCAGGTGGCCTTGGGATGGCGTCGGGATCCCGCCCGAGAAGAGCCGA
ATTTTTGTGTGTGTTCTCCTTGTGTGTGTCCAAACATACGCAAAACAATA
GGAGGAGTCCACAACAAGAGCCAGCTTTTTTCGTGTATTTATTTGCAGGC
TTTACACTTAGTAGGCTCATTCTACAGTATACAACAACAGCAGCACTCAC
CATCCATGTGTTTTTGCCTAAGCACAGGCCCGAGGCAGGGGAGTGA
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