mRNA_D-dudresnayi_contig9670.28454.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9670.28454.1
Unique NamemRNA_D-dudresnayi_contig9670.28454.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9670.28454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9670contigD-dudresnayi_contig9670:424..2346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size380
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.500977-CDS-D-dudresnayi_contig9670:423..5261622930918.500977-CDS-D-dudresnayi_contig9670:423..526Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9670 424..526 -
1690557965.1135406-CDS-D-dudresnayi_contig9670:423..5261690557965.1135406-CDS-D-dudresnayi_contig9670:423..526Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9670 424..526 -
1622930918.5250614-CDS-D-dudresnayi_contig9670:2071..23461622930918.5250614-CDS-D-dudresnayi_contig9670:2071..2346Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9670 2072..2346 -
1690557965.125715-CDS-D-dudresnayi_contig9670:2071..23461690557965.125715-CDS-D-dudresnayi_contig9670:2071..2346Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9670 2072..2346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9670.28454.1prot_D-dudresnayi_contig9670.28454.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9670 424..2346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9670.28454.1

>prot_D-dudresnayi_contig9670.28454.1 ID=prot_D-dudresnayi_contig9670.28454.1|Name=mRNA_D-dudresnayi_contig9670.28454.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=126bp
MRAAPSAVRFVGRIFLFDAFRLPGMMASHESHRCYSPRRCMQPGWRRTAW
GTGLSVAVLLVAVADGFNLSPATTASWLPRTRGCIQRRTRDRPQPPQSAR
LGGEVWTASTTAAAGAAKGRTSPLRA
back to top

mRNA from alignment at D-dudresnayi_contig9670:424..2346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9670.28454.1 ID=mRNA_D-dudresnayi_contig9670.28454.1|Name=mRNA_D-dudresnayi_contig9670.28454.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1923bp|location=Sequence derived from alignment at D-dudresnayi_contig9670:424..2346- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGAGCGGCCCCATCAGCAGTCAGGTTTGTTGGGCGCATTTTCTTGTT
TGATGCGTTCCGCCTGCCCGGCATGATGGCATCACACGAATCCCACCGCT
GCTACTCTCCGCGAAGGTGCATGCAACCTGGCTGGAGAAGGACCGCGTGG
GGGACTGGCCTGTCGGTTGCCGTGCTGCTTGTGGCGGTGGCCGATGGCTT
CAACCTCTCGCCAGCGACAACAGCCAGCTGGTTACCCCGAACTCGAGGGT
GCATTCAGAGAAGGACACGAGATAGGTGGGCTACCCTGGTTATTACAGCG
TATATATTAATCACTGGGGTGCGATGTTGTATATGGTAGGTGCTGCTGTC
TACCACCGTCGTAGCTCGTAGCAGTAGTGCTTTCTTGGAGGAGAGCGGTA
AATATTTGTGACACATGCACACCAAGCTTCGCAGTTCGGGAGAGCGAAGC
ACTTGACCACAGCTGTGCTCCACACACCGTCAGTTGCAGCAAGCGCCATC
GTAGTTTCACAGCGCTGAAGGCTTCTTTTCCCGTTGCCCGTCGATCGTCG
TTCGAATGCACGGCCTCGCGGATAGATAACTGCCTGTCTCCTTGCATTGA
TCCATAGCCCTGTCATGCAATCAGGCAACACGGGCCATGGGCACCTTGTT
GTCATGTTGTCATGTTATCATGATGTGTTCTCCGTTCCTTTGGAGTTCGA
CGTTTGAAATATCTCTCATTTCTCTACCCAACTCTCTACTCAACTCCACG
AGGCGATACCGTACTAATCCAATAGCAATACACACAGAGAGAGAGGGGGA
GAGAGAGAGAGAGAAGGGCGGTGCCGTACGGCACAGATTCCAGCATACGC
ACAGACCACACTCAAGAACCTTGTACGAGTACCGCCACACTGCGTTAGAA
CATGCAGTCAGTAGTGGTACCTATCAATAGCGCTGAGCGTCATATCGGAG
GGAGAACCCATATTGTACGACTCGTATAATCTGCGCGACAGAAGTATCAG
TATCTTGACTCGTGTCATATCACGATAGTACAGTCAGTAGTAGTACTCGT
AGTGAAGTTGACGATGATCCCTTCTGGCCCCCGAACCAGTTTGGAACGTC
ACGGCTGATGTATTTGCACTTTGAAAACAACATACTCAACGGGGTGACGC
TGTACCCTAAGTGGTTAGATTGTCGCGACTGTCGGCGGAAGTTCGGGATA
CGATTCCCAGTGAAAACAAAATGGCACTGTACTGTTGTACAGTTGTTCTG
TTGTGTGTCTTCTTCCGTCGCTGAAAGCGCGAGAGCGCGAGTAAGCACAA
TTCGATGAAGAAAGTCGACAAGCTATGGGAATGCCGAAACCTGTGCACGA
CGAAAACCGAGGCATATACCGCGGAGGAGAAGGATAGACACCTGTGACCA
CAGCTTGCTCAAGACAGGCGCGCTTAGCTATGAGTAGCAGAGCTCCTGTG
AGCTGCGGACTGTAAAGTACTTGTAAAAGTTATCGATAAAAATAAAAAAA
GACAAGACAGACAGACGGACTGGGACAGACACGCCTGTCTTGACACACAC
ACAGACACGGCTGTCTGACACACAAGACAGACAGACGACATACTTGTCAT
GTCCCGGAGTGTACTCGTACTGTTGTATTATATGGCAGTATGATAGTTAT
TATGCTGTGATGGCCAGCCCGCATTTACAATCGCCAGGTCCAGACTCCAG
CCGGGCTCTGACCTTATCTCAGTTTGCGCGCCGATTATCCCCCCGTCCCC
CCCCCCCCCCCCCCCCCCCCCTCCCTCCTTCCCTCCGATGCTATTTTGTG
TACCTTCATTTGCTGCATAGGCCACAGCCGCCGCAATCGGCGCGACTAGG
GGGAGAGGTATGGACGGCATCCACCACAGCCGCCGCTGGCGCCGCAAAGG
GGAGAACGTCGCCGCTCAGAGCC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9670:424..2346-

>mRNA_D-dudresnayi_contig9670.28454.1 ID=mRNA_D-dudresnayi_contig9670.28454.1|Name=mRNA_D-dudresnayi_contig9670.28454.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at D-dudresnayi_contig9670:424..2346- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGAGCGGCCCCATCAGCAGTCAGGTTTGTTGGGCGCATTTTCTTGTT
TGATGCGTTCCGCCTGCCCGGCATGATGGCATCACACGAATCCCACCGCT
GCTACTCTCCGCGAAGGTGCATGCAACCTGGCTGGAGAAGGACCGCGTGG
GGGACTGGCCTGTCGGTTGCCGTGCTGCTTGTGGCGGTGGCCGATGGCTT
CAACCTCTCGCCAGCGACAACAGCCAGCTGGTTACCCCGAACTCGAGGGT
GCATTCAGAGAAGGACACGAGATAGATGAGAGCGGCCCCATCAGCAGTCA
GGTTTGTTGGGCGCATTTTCTTGTTTGATGCGTTCCGCCTGCCCGGCATG
ATGGCATCACACGAATCCCACCGCTGCTACTCTCCGCGAAGGTGCATGCA
ACCTGGCTGGAGAAGGACCGCGTGGGGGACTGGCCTGTCGGTTGCCGTGC
TGCTTGTGGCGGTGGCCGATGGCTTCAACCTCTCGCCAGCGACAACAGCC
AGCTGGTTACCCCGAACTCGAGGGTGCATTCAGAGAAGGACACGAGATAG
GCCACAGCCGCCGCAATCGGCGCGACTAGGGGGAGAGGTATGGACGGCAT
CCACCACAGCCGCCGCTGGCGCCGCAAAGGGGAGAACGTCGCCGCTCAGA
GCCGCCACAGCCGCCGCAATCGGCGCGACTAGGGGGAGAGGTATGGACGG
CATCCACCACAGCCGCCGCTGGCGCCGCAAAGGGGAGAACGTCGCCGCTC
AGAGCC
back to top