mRNA_D-dudresnayi_contig9665.28448.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9665.28448.1
Unique NamemRNA_D-dudresnayi_contig9665.28448.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig9665.28448.1 vs. uniprot
Match: A0A7S3HGJ4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGJ4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.260e-40
Identity = 62/104 (59.62%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:  214 GMVQFIDIITGKYLSASNNRLILQQRMDRSTYFMCFMKESHLYGFRNEKTLKFIGCAMLGHIIAESEYFGTQEECYIDINAKTTGILFIARHWGAGGWLKRPLT 525
            GM QF+D +T ++LS  + RL+L   ++R+TYF CF+KE++L+  +N+K  K+IGCA LGHI+ ES YFGTQEE +ID  A+ TGI+FIARHWGAGGWLKRP T
Sbjct:    4 GMYQFVDTVTNQFLSVQDGRLVLSPILNRATYFHCFVKETNLFAAQNDKFQKYIGCAFLGHIVVESTYFGTQEEVFIDFKAEKTGIMFIARHWGAGGWLKRPPT 107
[Close]
BLAST of mRNA_D-dudresnayi_contig9665.28448.1 vs. uniprot
Match: A0A482SKF7_9ARCH (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKF7_9ARCH)

HSP 1 Score: 121 bits (304), Expect = 5.040e-30
Identity = 59/167 (35.33%), Postives = 112/167 (67.07%), Query Frame = 1 
Query:   19 LDEISSAVATLHKMSLDIGEQIDNHNTTIEKISEKTDKVTEQTLAVTIRASQLS-NRTNNRKPKIVGMVQFIDIITGKYLSASNNRLILQQRMDRSTYFMCFMKESHLYGFRNEKTLKFIGCAMLGHIIAESEYFGTQEECYIDINAKTTGILFIARHWGAGGWLKR 516
            L+E++ +V++LH +S+ IGE +++    I+++    DK+ ++TL  ++RAS+L+ ++ ++   K + + QFI       L++  ++L++ +   RS  F C++K   + G R+E TLK++GC + G I    EYFG+QEEC++D+N + +G+L ++R++GAGGWLK+
Sbjct:  148 LEELARSVSSLHTVSVTIGEALESSTKQIDRLDLNADKLHDETLYASLRASRLTASKASSSLIKPIALFQFIT--DDGLLASIGDKLVVTKDATRSCIFGCYVKNQIIIGMRSETTLKYLGCTIWGTIAISGEYFGSQEECFVDLNGRRSGLLLMSRNFGAGGWLKK 312
[Close]
BLAST of mRNA_D-dudresnayi_contig9665.28448.1 vs. uniprot
Match: A0A7S3HGX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGX7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.360e-19
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    4 KEKDDLDEISSAVATLHKMSLDIGEQIDNHNTTIEKISEKTDKVTEQTLAVTIRASQLSNRTNNRKPKIVGMVQFIDIIT 243
            ++KDDL EIS+AVATLH+MSL+IG Q++  + TIE +S K++KVTEQTLAVTI+ASQL +R+   +P+  GM QF+D +T
Sbjct:  102 RDKDDLQEISAAVATLHQMSLEIGTQLELQSNTIEGLSAKSEKVTEQTLAVTIKASQLRDRSRGSRPQYGGMYQFVDTVT 181
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9665.28448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3HGJ4_9STRA1.260e-4059.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SKF7_9ARCH5.040e-3035.33t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3HGX7_9STRA1.360e-1958.75Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9665contigD-dudresnayi_contig9665:72..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue8.4e-08
Seed eggNOG ortholog44056.XP_009038386.1
EggNOG free text desc.zinc finger
EggNOG OGs28M8X@1,2QTS4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.888053-CDS-D-dudresnayi_contig9665:71..5991622930917.888053-CDS-D-dudresnayi_contig9665:71..599Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9665 72..599 +
1690557964.881716-CDS-D-dudresnayi_contig9665:71..5991690557964.881716-CDS-D-dudresnayi_contig9665:71..599Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9665 72..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9665.28448.1prot_D-dudresnayi_contig9665.28448.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9665 72..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9665.28448.1

>prot_D-dudresnayi_contig9665.28448.1 ID=prot_D-dudresnayi_contig9665.28448.1|Name=mRNA_D-dudresnayi_contig9665.28448.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=176bp
EKEKDDLDEISSAVATLHKMSLDIGEQIDNHNTTIEKISEKTDKVTEQTL
AVTIRASQLSNRTNNRKPKIVGMVQFIDIITGKYLSASNNRLILQQRMDR
STYFMCFMKESHLYGFRNEKTLKFIGCAMLGHIIAESEYFGTQEECYIDI
NAKTTGILFIARHWGAGGWLKRPLTD
back to top

mRNA from alignment at D-dudresnayi_contig9665:72..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9665.28448.1 ID=mRNA_D-dudresnayi_contig9665.28448.1|Name=mRNA_D-dudresnayi_contig9665.28448.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at D-dudresnayi_contig9665:72..599+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAAAAGGAAAAGGACGATCTGGATGAAATATCCTCAGCAGTCGCAACTTT
ACATAAAATGAGTCTCGATATAGGGGAACAAATAGATAATCACAATACAA
CCATTGAGAAAATATCAGAAAAAACTGATAAAGTTACAGAACAAACTTTA
GCTGTAACAATTCGTGCTAGTCAATTAAGTAATCGTACTAATAATCGCAA
ACCTAAAATTGTTGGAATGGTACAATTTATTGATATAATCACTGGAAAAT
ATTTATCAGCATCAAATAATAGATTAATTTTACAACAAAGAATGGATAGA
TCAACATATTTTATGTGTTTTATGAAAGAATCTCATTTATATGGGTTTCG
TAATGAGAAAACATTAAAATTCATTGGATGCGCAATGTTAGGGCATATTA
TCGCAGAAAGCGAATATTTTGGTACACAAGAAGAATGTTATATTGATATA
AATGCGAAAACTACAGGGATATTGTTTATAGCTAGACATTGGGGTGCAGG
TGGGTGGTTGAAACGACCATTAACTGAT
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9665:72..599+

>mRNA_D-dudresnayi_contig9665.28448.1 ID=mRNA_D-dudresnayi_contig9665.28448.1|Name=mRNA_D-dudresnayi_contig9665.28448.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at D-dudresnayi_contig9665:72..599+ (Desmarestia dudresnayi DdudBR16 monoicous)
GAAAAGGAAAAGGACGATCTGGATGAAATATCCTCAGCAGTCGCAACTTT
ACATAAAATGAGTCTCGATATAGGGGAACAAATAGATAATCACAATACAA
CCATTGAGAAAATATCAGAAAAAACTGATAAAGTTACAGAACAAACTTTA
GCTGTAACAATTCGTGCTAGTCAATTAAGTAATCGTACTAATAATCGCAA
ACCTAAAATTGTTGGAATGGTACAATTTATTGATATAATCACTGGAAAAT
ATTTATCAGCATCAAATAATAGATTAATTTTACAACAAAGAATGGATAGA
TCAACATATTTTATGTGTTTTATGAAAGAATCTCATTTATATGGGTTTCG
TAATGAGAAAACATTAAAATTCATTGGATGCGCAATGTTAGGGCATATTA
TCGCAGAAAGCGAATATTTTGGTACACAAGAAGAATGTTATATTGATATA
AATGCGAAAACTACAGGGATATTGTTTATAGCTAGACATTGGGGTGCAGG
TGGGTGGTTGAAACGACCATTAACTGATGAAAAGGAAAAGGACGATCTGG
ATGAAATATCCTCAGCAGTCGCAACTTTACATAAAATGAGTCTCGATATA
GGGGAACAAATAGATAATCACAATACAACCATTGAGAAAATATCAGAAAA
AACTGATAAAGTTACAGAACAAACTTTAGCTGTAACAATTCGTGCTAGTC
AATTAAGTAATCGTACTAATAATCGCAAACCTAAAATTGTTGGAATGGTA
CAATTTATTGATATAATCACTGGAAAATATTTATCAGCATCAAATAATAG
ATTAATTTTACAACAAAGAATGGATAGATCAACATATTTTATGTGTTTTA
TGAAAGAATCTCATTTATATGGGTTTCGTAATGAGAAAACATTAAAATTC
ATTGGATGCGCAATGTTAGGGCATATTATCGCAGAAAGCGAATATTTTGG
TACACAAGAAGAATGTTATATTGATATAAATGCGAAAACTACAGGGATAT
TGTTTATAGCTAGACATTGGGGTGCAGGTGGGTGGTTGAAACGACCATTA
ACTGAT
back to top