mRNA_D-dudresnayi_contig9659.28442.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9659.28442.1
Unique NamemRNA_D-dudresnayi_contig9659.28442.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9659.28442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9659contigD-dudresnayi_contig9659:6009..6590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9659.28442.1prot_D-dudresnayi_contig9659.28442.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9659 6219..6569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.6367946-UTR-D-dudresnayi_contig9659:6008..62181622930916.6367946-UTR-D-dudresnayi_contig9659:6008..6218Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9659 6009..6218 -
1690557964.3822415-UTR-D-dudresnayi_contig9659:6008..62181690557964.3822415-UTR-D-dudresnayi_contig9659:6008..6218Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9659 6009..6218 -
1622930916.690221-UTR-D-dudresnayi_contig9659:6569..65901622930916.690221-UTR-D-dudresnayi_contig9659:6569..6590Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9659 6570..6590 -
1690557964.4068515-UTR-D-dudresnayi_contig9659:6569..65901690557964.4068515-UTR-D-dudresnayi_contig9659:6569..6590Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9659 6570..6590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.6549547-CDS-D-dudresnayi_contig9659:6218..63781622930916.6549547-CDS-D-dudresnayi_contig9659:6218..6378Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9659 6219..6378 -
1690557964.390677-CDS-D-dudresnayi_contig9659:6218..63781690557964.390677-CDS-D-dudresnayi_contig9659:6218..6378Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9659 6219..6378 -
1622930916.6731067-CDS-D-dudresnayi_contig9659:6471..65691622930916.6731067-CDS-D-dudresnayi_contig9659:6471..6569Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9659 6472..6569 -
1690557964.398811-CDS-D-dudresnayi_contig9659:6471..65691690557964.398811-CDS-D-dudresnayi_contig9659:6471..6569Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9659 6472..6569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9659.28442.1

>prot_D-dudresnayi_contig9659.28442.1 ID=prot_D-dudresnayi_contig9659.28442.1|Name=mRNA_D-dudresnayi_contig9659.28442.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=86bp
MALWLYKRPAILTDEGAHKESQQVSRLLQRAKRALVSWKRSIRNTLIGQS
TAISGTEMTTMASRKHAVDTDYTKLPSSEIEADIV*
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mRNA from alignment at D-dudresnayi_contig9659:6009..6590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9659.28442.1 ID=mRNA_D-dudresnayi_contig9659.28442.1|Name=mRNA_D-dudresnayi_contig9659.28442.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at D-dudresnayi_contig9659:6009..6590- (Desmarestia dudresnayi DdudBR16 monoicous)
GTCTCCGTGGTGGTCTCCTCGATGGCGCTGTGGTTGTACAAGCGGCCCGC
TATCCTTACCGACGAGGGAGCCCACAAGGAGTCACAGCAGGTCTCACGGC
TCCTGCAGCGCGCTAAGCGGTGAGTCACTACCAGAGCACAGTCTATGCAC
CTCTCTCTGTTTCTATTTAGAATACTTTGATTGATTATATACTACTGTAT
ATCTACAAACAGAGCGCTAGTCTCGTGGAAGCGCAGCATTCGGAATACAC
TCATAGGGCAGAGCACGGCGATCAGCGGCACAGAGATGACCACGATGGCC
AGCAGGAAGCATGCAGTCGATACTGACTACACGAAGCTGCCTAGCTCAGA
GATAGAGGCTGACATCGTGTAGTACGCGCATACCATACAACAGTCTCTGC
TAGTGTCCAGGAGCAGCTATTCATTAATAATACATTTCATAGGCGATGTA
TGCACTACCAGACACAATTGCAGTGCATAGCGATGCGTCTAAAGAGGATG
ATAACAGCAGATAACCCTCAATACCATTATTTTGTATCACAAATATTGTA
ACTAATATAATCTCATCTGTTGAACAGAAAAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9659:6009..6590-

>mRNA_D-dudresnayi_contig9659.28442.1 ID=mRNA_D-dudresnayi_contig9659.28442.1|Name=mRNA_D-dudresnayi_contig9659.28442.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at D-dudresnayi_contig9659:6009..6590- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGCTGTGGTTGTACAAGCGGCCCGCTATCCTTACCGACGAGGGAGC
CCACAAGGAGTCACAGCAGGTCTCACGGCTCCTGCAGCGCGCTAAGCGAT
GGCGCTGTGGTTGTACAAGCGGCCCGCTATCCTTACCGACGAGGGAGCCC
ACAAGGAGTCACAGCAGGTCTCACGGCTCCTGCAGCGCGCTAAGCGAGCG
CTAGTCTCGTGGAAGCGCAGCATTCGGAATACACTCATAGGGCAGAGCAC
GGCGATCAGCGGCACAGAGATGACCACGATGGCCAGCAGGAAGCATGCAG
TCGATACTGACTACACGAAGCTGCCTAGCTCAGAGATAGAGGCTGACATC
GTGTAGAGCGCTAGTCTCGTGGAAGCGCAGCATTCGGAATACACTCATAG
GGCAGAGCACGGCGATCAGCGGCACAGAGATGACCACGATGGCCAGCAGG
AAGCATGCAGTCGATACTGACTACACGAAGCTGCCTAGCTCAGAGATAGA
GGCTGACATCGTGTAG
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