mRNA_D-dudresnayi_contig9601.28385.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9601.28385.1
Unique NamemRNA_D-dudresnayi_contig9601.28385.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig9601.28385.1 vs. uniprot
Match: A0A6H5L564_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L564_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.450e-30
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 1 
Query:   37 MESCPVCYENFSL----SVARKLPCGHVACTQCLEECFEGDSEGRDKSESEGPGVRCPECFVLFLFDSVQSVSTYD--AAGEECEADGRDLPNTILEEPGDQ----------SVSQTNGGRSGTSKMAAFLSTNKAQNHVPTF 417
            M+SCPVCY  FS     +V R+LPCGHVACT CL +C++   E RD  E +G GVRCPECF L + DSV+SV  YD  AA  E + DG +    + EE GD           +VS         SK+AAFLS NKA+ HVPTF
Sbjct:    1 MDSCPVCYSAFSSEEAGTVGRRLPCGHVACTACLHDCWDAPPEHRDPKEPKGAGVRCPECFTLHVLDSVESVPVYDVEAATLEGQGDGDNELERVEEELGDAGQDETIEEAAAVSPPPSPAPKASKLAAFLSANKAEKHVPTF 143
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9601.28385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L564_9PHAE1.450e-3048.95Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9601contigD-dudresnayi_contig9601:2882..9178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9601.28385.1prot_D-dudresnayi_contig9601.28385.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9601 2882..9178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.0288906-CDS-D-dudresnayi_contig9601:2881..30261622930909.0288906-CDS-D-dudresnayi_contig9601:2881..3026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 2882..3026 -
1690557961.6628275-CDS-D-dudresnayi_contig9601:2881..30261690557961.6628275-CDS-D-dudresnayi_contig9601:2881..3026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 2882..3026 -
1622930909.0472264-CDS-D-dudresnayi_contig9601:3643..37861622930909.0472264-CDS-D-dudresnayi_contig9601:3643..3786Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 3644..3786 -
1690557961.6734524-CDS-D-dudresnayi_contig9601:3643..37861690557961.6734524-CDS-D-dudresnayi_contig9601:3643..3786Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 3644..3786 -
1622930909.0684829-CDS-D-dudresnayi_contig9601:9004..91781622930909.0684829-CDS-D-dudresnayi_contig9601:9004..9178Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 9005..9178 -
1690557961.6839755-CDS-D-dudresnayi_contig9601:9004..91781690557961.6839755-CDS-D-dudresnayi_contig9601:9004..9178Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 9005..9178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9601.28385.1

>prot_D-dudresnayi_contig9601.28385.1 ID=prot_D-dudresnayi_contig9601.28385.1|Name=mRNA_D-dudresnayi_contig9601.28385.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=154bp
ARANLIWGWGGAMESCPVCYENFSLSVARKLPCGHVACTQCLEECFEGDS
EGRDKSESEGPGVRCPECFVLFLFDSVQSVSTYDAAGEECEADGRDLPNT
ILEEPGDQSVSQTNGGRSGTSKMAAFLSTNKAQNHVPTFGVDEGEGDDEE
GDAA
back to top

mRNA from alignment at D-dudresnayi_contig9601:2882..9178-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9601.28385.1 ID=mRNA_D-dudresnayi_contig9601.28385.1|Name=mRNA_D-dudresnayi_contig9601.28385.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=6297bp|location=Sequence derived from alignment at D-dudresnayi_contig9601:2882..9178- (Desmarestia dudresnayi DdudBR16 monoicous)
GCGAGAGCAAATTTGATTTGGGGTTGGGGGGGAGCGATGGAGAGCTGCCC
GGTTTGCTACGAAAATTTCTCATTGAGCGTTGCGAGGAAGTTACCGTGCG
GTCACGTCGCGTGCACGCAATGCCTGGAGGAGTGCTTCGAGGGCGACAGC
GAAGGACGCGACAAATCAGAGTCTGTAAGAAGTGAAGACTACTACACAGT
AAGCTATGATAGTACAACGAGTACTACAGAGTCGTATTAATAGTACTATC
TTATCATAGCATACTGATATTGATTGCGGCCACGCTTCGCTGTGTGTTAT
CTTGCAGTATGTATTACTCTGTCGTGAACGCGATCGCAGCAACGTGATGG
AGTGCAGTCTATAATTCAGCGATTACGCTGTCACTGCATAGCGAGTTTGC
ATTTTACTCGTAGGAATACCAGTACAGTAGAGTAGATAGACCGATGAGGC
AGAATTATTGAGCATTGTTATAATAGAGGGCACAACAACAGATAGATGAC
ACGAAACAATGGCAGGGACTTCAATACTTGTTTGAACTGGAACAGAGGCA
GGATCAATACTAAGTATACTATTATACTACTACTGTCGTTGTACTACTGT
CGTAGTGGAATGTTATACTCGTAGTCCGCCTATCTGAGGGATAATAGATA
ATAGGCGCTCGCCCGAAATAAAATCATAATGCGACACTTGTGGCGGTATG
GTGTTGAAATGGCTCCCCAAAGTAAAGCTCGTGGCCAGCAGTAGTATGTA
TAGTAGTATAGTAGTATAGTAGTATAGCATCGGTGAGTTAGGTGCGCACT
CCTATCCTGCGCACGAAGAGACACAGACTATTAATACAACTCTCTGTCTA
TGAAGAGTACTCCGTGTTCATCGACTTGACCTTGTTTTTTTACGTGTGAC
GGATCAAAATGAGGATAACACTACTTGCACGATACGATACCAGGTATTAT
TATTTTTACTTGCGAAGACATCAGCCGTGACATTCCAAACTGGTTCGGGG
GGCAGGGGATAATCGTCAACCTCACTGTGTGATACTATCGGTCGCGCGGA
TTCTATCGGTCCTCAGATAAGTTTTAACGCAGTGGCTCCCCTGGGGTGTC
CCAGGCTCTTATAGCGGTACGCCATCACGGTACAGAGGCAACACTACCCC
CCCCCCCCCCGCGCGCGCTTGTGCACGATGTTCGGGCGGTGCTGTTGTCG
ATAGACAAAATAGTCTAATAATAAAGAAGAGCTTCGTGTTCTTATCTCAT
CAGTGATATCGCACTTACGTCTGGAAGAGTATCATCCGTGTTTTGTGCCG
CGCGGAGATGAAAAGAAGAAGCTGAAAACAGGAAACAGAGGACATAGTGC
AGCTGCAGCCAGAGTGATTCGACGTTGATTTGCTGATAATAGCGTACAAT
ACAAATTCTATCATATGATACGATAGATGATAGCACAAATGTACGAATCG
GTTCTGAGAAGGCGACATATCGAACAGACCCGCCGCTTTATACATACCTA
TAGTTTATACTATAATATCATACGAGATACAAGTATAGTTTATGACTTCA
TGATGTGGTCTGCATCTAACGGCGACCTTTGAAATCGGACCTGCGATAGC
TAACATGCGAGCCCAACAATCTGCGTCTTGGTTGCCAGGTTGCGGTACTA
CTGTTGTTACAACAGTACAGAACATATACGAAGTATGCGCGAACGAGCTC
AGTATGATGATGGTAGTAGAGCTATGATATGGTATGATACAAAGTATGAT
ACGAGTGAGCGATCGCGAGGTGATCATCTTGCTCTGATATTATGATGATA
TTATGATGTTGCGTTTACTGCCCCCTCGTGCCTTTTGATGACATCGTGAC
CTGCCTGTTCTGCTTGCGGTGTCGGTAGTGTGGTGTGCCTGCTTTTTATC
TGACATTTGTTATTATAGCACGGAAGTATCATGATACTTACTATTAATAC
TTTTTACTCCCGTTTGAGCAGCATCGCATTTTTTTATGAAGTACTACTGT
ATGAATGTGAATGTGAATGTATCAATTGCCGATAAAGGATGGCGTGCCTC
TGTTTTCTGTTTGCTGTTTGTTGTCTGTTGAAAGCCGTGTCACGTTGTGC
GCACGCCGCACGCCCCCGACACCCCGGTATTTCTTAGTTTTACGACTTAT
TGATTGTGATCGCACAGCGCAGCAGGAGCTTTTCTTTTTTTTTTAACCTG
CCTGGTATGGCATTATACTCGCACACCGCGCAAGTCCGTATCGAGCTCTA
TCAATACATGACTTATGTGTCTGTTGTGGCATTACCGTATACTGGCTCTG
TTGTTGTACTGCACTATAATACACGTATATCAAGCGATCCTCGTACTACT
ACTGTTGTATTGCTGACTCTCAAGTCGTCACGGGACTTCCCTGGGAGTAG
TCTCAGAACAGAGTACAGAGGAGGACAAAGCAGGCCGCGCCCTTTATCAT
ATCATATCATATCATATCATATCATATCATATCATATCATGTCTTATCAT
ATCATGTCATATCATACCGGGCGTGAATCAATTGATTCGTCGCACTCACA
AATCCATCATTGCATTTTTTCGTTAGAGCTATAGCACCATCATACTCGCA
CTGTTCGAAGGTTAAGGTTAGGACTGCACGAGGCTATGCGCTTGGTTAGT
ATTGCAATGTCCTCAACAATAGTACGGTAGTGCTATGATAATAGGTACCT
GGTAACTGCTCTATTCTGCGGGTGTTGAAGTCGTTCTATGACAGTTGTTG
TTGTTTCTCACATTAGCTCATCTCAAACGATTTCGCCCGTGGTCACAAAA
CCCGGCACCATAACGCTCCAGAAGGAACGACAAAGAAAAATAAAGCAAAA
CATACATATGAGAAAGAGCAATACAGTGCGCCCAAGGAGGGCGGCTCCTT
TCGCAAGAAAAAGAAAATACTTTCACAGACTCGAAATAAACTCATGACAA
AAATAAGCCCACAACCAAGAAACCAAAGAACACCACAGACAACAAAAAAG
GTGTGGTAAAAGAGGTTTTGTCTCGACAGACTTTGTGGGATATCGTCTCC
TCCGGAAGTGAAAATTAATTAGTTCAAACTATTATTATTATTATTATTAT
TATTATTATATTATACTAGAACAGCAACAGCACCAATCTCATCAGTGCGA
GATTTTACCCGTTATAAAGGTCATCTCCACATTACCCCCCCTTTTTGAGA
CTTTGCTCTTAGGGCCTGTCCTAACCAAATTTAAGGATTCAGAATTTTTG
GAAAATTTTGAATTGCACTGCTGAAAATTACCGTTTGTGTCTTAACAAAT
TTCTCGAGCTTTGAACTTACAAGCAAACAGTGCCTATCGCACAAGAAACC
CAATTGCACCACCGCAACACGTACACGACGACAAAACGCCCACAAAGGAC
GCAGCAAGCCTCTAGTTTGGTTCACGTACTCACTACACAGCTCGATACCG
CCGGCCTGCTTTGGCAGTTCGGCAAAATCCGCGAAAACCACAACATGTTT
TGCTCTTGGCGCGAGCTCGCAGTACTGTTGTGCTATATTTCAGCTTCTGT
GTGGGTCAATTGGGACGCGTGACACCTCTTCGTTATATTTGTGATCCTGT
TGTGTTTGTGCCTTGTGCTGCGACCTCGGGTGCGGCGCTACGGGCTTCGC
GGCACCTTGTTTAGTACTGTGCTATGTTGCAGCTCCTGGGCGAGTTCCAA
CAGTCGAGGCGTTTATTTGCTGAATTGTGAATCCTGAACAAATTAAATGC
TTCGCTACTTCTTTTCTTCAGCCTTCAGATAGTTCAAGAATTTCTTGCTC
TTAACAAACTACGCAGAAGGGCTGCCCAATCAGAGTTTCGCATTGCAGGT
GTCAACTGAATTCTTGCAGAATTCTGAATTATTAAATTTTGATAAGAGAC
CCTTAGGCAACAAGTTTTCTTAAGGGTAACCGGAACCCGACTAAAGGGAC
AAAAGGGACCGGCTGGCGGCGAAACGTTCCCTTTTTTTCTTGGGTTGGGG
TTCAGTGCGTGTTTAGTGTGGGTTTGCTACGTCACCACGTCATCAGAAGC
TTCGTCAGTTGGAAGATCGAACTTTTTGGTTCCCTATTAATAACCGTTTT
TCTAACATTAATGTTTTTTTTGTTGTTGGAGGATTATTGGTGGGTGGCGG
GAATTGAACCCGGGTCTTTGCCAACCTAAAGTCAGATATCTCATCGACGG
TGCCAATGTAATAAAAATTATCCTGTCTGTAGAGCCTGGGACACCCCAGG
GGAGCCACTGCGTTATAACTTATTGGAGGACCGATAGAATCCGCGCGACC
GATGTATCACACAGTGAGGTTGACGATTATCCCCTGACCCCCGAACCAGT
TTGGAACGTCACGGCTGATGTCTTTGTAAGATAAAATAATAATATGATAG
GATTATCTAAGCGTCAACTACAGGTAGCTAAAGCTACAGCTGCACCCCCC
CCCCTTCTCTGTAGGTCTAGCCATAGATCATGGATACACGCATGGGGTCC
CCAGGGGGGGGGGCATCACGGTCGTACGGCAATAAGGCAGTACCAGCGCA
CACTCAGGAGTAAACATACCATGTGTACTATCACAGTACTATCGTGGCGT
AATACAGCTACAGCTATGATATACACAGCATGCGTGCAAGAAGGACATGC
TATGGTGGTGTTCAGTCCTTGGGCCCATTGTTGTATGTATGCACTATAGG
GCAGGGCGGTCGACTACGCACATACCGCAGTCCACTTTTGTAGCTTACCT
CTGTTGTGATGTTAGTTACGTACTAGCGGCGTTGTTGGCGTATTAATACA
CCTCGAAGTATTAATATGTTGATAGTGGATACTCAAACACTCCCCCGGTC
CCGCTATTCGAATAGACCTAATAGACCTAATAGAACTAATATACCTAATG
CAGCTTTGGTACAACTGCACATGCGGCTGACCCTAACAATCGTAGCCCTT
GCGATATAGGTGGTCACTGATGACTGATGAGTGATGAGTGATGAGCTAAT
GTGAGAAGGGCAACGACATGTGGTTCTTGCCGATCTTGTTGCCTCAAAGC
TAAGCACGCACAACAAACGTGCTACAGTAGTAGTAGTAGTAGCTGGTTCG
TGCCCCGTGCAGCATCCATCCTCGTGTTCCGTAATGACTTCCCTCTGTTA
CACTGACCTCATCTATATATATATATTATATATATATCATACTGCTCGAT
AATCGCAGACTACAGTATTATTAGATTAATAATATATCTGTTCGGGAGAT
ATATCTCGGCGTAGGTCTGGAGTATTCATGTCGAATGTTCCGGCCGCATA
TGTCGTTACCTGCGGTGTTTCCTGTTAACCTCGGGGAATATTGCGATGTC
GTCATGTCTTTTCGTGTCGTGTGCCGGATGTGGGACACTCAGGAGGGGCC
TGGCGTTCGCTGCCCGGAGTGCTTCGTTTTGTTCCTGTTCGATAGCGTCC
AGTCTGTCAGCACGTATGACGCGGCTGGAGAGGAGTGCGAAGCGGATGGG
CGAGATTTACCTAACACTATTCTTGAGGAGCCAGGGTGAGCGCGTTTTTT
ATCACCACATTAAATCACAACTCGGCGTGACGTGACATGACGTGACGTGA
CGTGACGTGACGTGACGTGACGTGACGTGACGAGCGTGGTTTGTTGTTGC
GGTGCCCTACCTTTAAGTTCAAGCCAAGCCGAATTTGACTCGTGTTCACA
GCTATCATAGCAACCATTGCTCTCGTGATATCATAACGCTATGTAGATGA
TCGAGATCGATTAATAGACTGGTTGGGCATACCGTATACGGTATACTGTT
TACCGTTTACCGTATACTGTACCTTTGTACGAAGGGGGAGAGACCTGCGT
GGATAGAGGCGCCTTCATGTTCCACCAACGATCCTCCTGTGAGCCACGAA
TGATCCATTTATGGTCCACCTATGTATGGAGGGGTCATATTGCACGTGGT
AGACGTGACGAGACGGCATTCAAGACGCGCTCAAAGGCCGTGTGTAGCTT
TTCGTAGTATCATACTTCGTATCATGAATACTATACTACTCGTACTGTGT
TGTCGTTATATCTGATATCCTCAGTTGGTACTACCATAGCCCGGCAAACC
AGGTTCTGTTGTTTTGAAATCGCGGTCTGTATTCTGCCGTTTCGTACAAT
AGGGACCAATCTGTTTCGCAAACAAATGGCGGACGCAGCGGGACTTCAAA
GATGGCTGCGTTTTTGAGCACCAACAAGGCCCAAAACCACGTTCCGACAT
TCGGGGTAGATGAGGGGGAAGGAGATGACGAGGAGGGAGATGCCGCG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9601:2882..9178-

>mRNA_D-dudresnayi_contig9601.28385.1 ID=mRNA_D-dudresnayi_contig9601.28385.1|Name=mRNA_D-dudresnayi_contig9601.28385.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at D-dudresnayi_contig9601:2882..9178- (Desmarestia dudresnayi DdudBR16 monoicous)
GCGAGAGCAAATTTGATTTGGGGTTGGGGGGGAGCGATGGAGAGCTGCCC
GGTTTGCTACGAAAATTTCTCATTGAGCGTTGCGAGGAAGTTACCGTGCG
GTCACGTCGCGTGCACGCAATGCCTGGAGGAGTGCTTCGAGGGCGACAGC
GAAGGACGCGACAAATCAGAGTCTGCGAGAGCAAATTTGATTTGGGGTTG
GGGGGGAGCGATGGAGAGCTGCCCGGTTTGCTACGAAAATTTCTCATTGA
GCGTTGCGAGGAAGTTACCGTGCGGTCACGTCGCGTGCACGCAATGCCTG
GAGGAGTGCTTCGAGGGCGACAGCGAAGGACGCGACAAATCAGAGTCTGA
GGGGCCTGGCGTTCGCTGCCCGGAGTGCTTCGTTTTGTTCCTGTTCGATA
GCGTCCAGTCTGTCAGCACGTATGACGCGGCTGGAGAGGAGTGCGAAGCG
GATGGGCGAGATTTACCTAACACTATTCTTGAGGAGCCAGGGAGGGGCCT
GGCGTTCGCTGCCCGGAGTGCTTCGTTTTGTTCCTGTTCGATAGCGTCCA
GTCTGTCAGCACGTATGACGCGGCTGGAGAGGAGTGCGAAGCGGATGGGC
GAGATTTACCTAACACTATTCTTGAGGAGCCAGGGGACCAATCTGTTTCG
CAAACAAATGGCGGACGCAGCGGGACTTCAAAGATGGCTGCGTTTTTGAG
CACCAACAAGGCCCAAAACCACGTTCCGACATTCGGGGTAGATGAGGGGG
AAGGAGATGACGAGGAGGGAGATGCCGCGGGACCAATCTGTTTCGCAAAC
AAATGGCGGACGCAGCGGGACTTCAAAGATGGCTGCGTTTTTGAGCACCA
ACAAGGCCCAAAACCACGTTCCGACATTCGGGGTAGATGAGGGGGAAGGA
GATGACGAGGAGGGAGATGCCGCG
back to top