mRNA_D-dudresnayi_contig9449.28250.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9449.28250.1
Unique NamemRNA_D-dudresnayi_contig9449.28250.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A482S6F8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6F8_9ARCH)

HSP 1 Score: 128 bits (322), Expect = 5.710e-34
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    7 MSRVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRN 264
            MSRV+MPH NRVS SAAL+TND+WSKTIG+DPYA + E K  + D   Q ASLMLLA+MSNLSG ESRGGCKKCG+LGH+ FQCRN
Sbjct:    1 MSRVKMPHGNRVSGSAALKTNDIWSKTIGYDPYANSSETKN-EADIEAQRASLMLLARMSNLSGSESRGGCKKCGLLGHLAFQCRN 85          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.010e-26
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRNTTG--PPAVANDDS 300
            RVRMPHNNR+ +SAAL+   +W  TIG+DPYAA  EKK++      Q   LM LAK+SN S  + RG CKKCGM+GH+TFQCRN  G     VA+ DS
Sbjct:    7 RVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKKETSETSYEQAKGLMALAKLSNKSN-DVRGACKKCGMVGHLTFQCRNHLGGDEKRVASSDS 103          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A3M6VM93_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM93_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.890e-26
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRNTTGP--PAVANDDSS 303
            RVRMPHNNR+ +SAAL+   +W  TIG+DPYAA DEKK++      Q   LM LAK+SN  G + RG CKKCG +GH+TFQCRN  G     VA+ DSS
Sbjct:   21 RVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKKETTETSYEQAKGLMTLAKLSN-KGSDVRGACKKCGKVGHLTFQCRNHLGELEKRVASSDSS 118          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A225X0W2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0W2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.330e-25
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRNTTG--PPAVANDDSS 303
            RVRMPHNNR+ +SAAL+   +W  TIG+DPYAA +EKK++      Q   LM LAK+SN S  + RG CKKCGM+GH+TFQCRN  G     VA+ DSS
Sbjct:    7 RVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAENEKKETSETSYEQAKGLMALAKLSNKSN-DVRGACKKCGMVGHLTFQCRNHLGGDEKRVASSDSS 104          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A6A3SK00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SK00_9STRA)

HSP 1 Score: 107 bits (266), Expect = 8.450e-25
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRNTTG 273
            RVRMPHNNR+ +SAAL+   +W  TIG+DPYAA DEK+++ +    Q   LM LAK+SN S  + RG CKKCGM+GH+TFQCRN  G
Sbjct:    7 RVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKQETSDTSFEQAKGLMALAKLSNKSN-DVRGACKKCGMVGHLTFQCRNHLG 92          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 102 bits (254), Expect = 8.770e-25
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSN--QTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRN 264
            RVRMPHNNR+ +SAAL+   +W  TIG+DPYAA  E++Q     S+  Q   LM LAK+SN  G E RG CKKCGMLGH+TFQCRN
Sbjct:    7 RVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSN-QGNEVRGACKKCGMLGHLTFQCRN 91          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A5D6YD99_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD99_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.320e-24
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRN 264
            RVRMPHNNR+ +SAAL+   +W  TIG+DPYAA DE+K+       Q   LM LAK+SN S  + RG CKKCGM+GH+TFQCRN
Sbjct:    7 RVRMPHNNRMHSSAALQMTGIWKNTIGYDPYAAEDEEKKVSESAYEQAKGLMALAKLSNKSN-DVRGACKKCGMVGHLTFQCRN 89          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A024G937_9STRA (CCHC-type domain-containing protein n=5 Tax=Albugo candida TaxID=65357 RepID=A0A024G937_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.680e-23
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRN--TTGPPAVA--NDDS 300
            R+RMPHNNR+ +S  L+   MW  TIG+DPYAA+DE  Q      +Q   LM LAK+SN    +SRG CKKCGM+GH+T+QCRN     P AV+  +DDS
Sbjct:    7 RMRMPHNNRMHSSLTLKMTGMWKNTIGYDPYAASDEGVQDSELAQDQAKGLMALAKLSN-QNTQSRGACKKCGMIGHLTYQCRNHLLDQPKAVSESSDDS 105          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 102 bits (254), Expect = 3.470e-23
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAA-ADEKKQSDNDPSNQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRN 264
            RVRMPHNNR+ +SAAL+   +W+ TIG+DPYAA  +EKK+       Q   LM LAK+SN S  + RG CKKCGMLGH+TFQCRN
Sbjct:    7 RVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAEGEEKKEVSQSSYEQAQGLMALAKLSNKSN-DVRGACKKCGMLGHLTFQCRN 90          
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Match: A0A484DTE6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTE6_BRELC)

HSP 1 Score: 101 bits (252), Expect = 6.300e-23
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   13 RVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPS-NQTASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRNTTG 273
            RVRMPHNNR+ +SAAL+   MW  TIG+DPYAA +EK++   D S  Q   LM LAK+SN S  + RG CKKC M+GH+TFQCRN  G
Sbjct:    7 RVRMPHNNRMHSSAALKMTGMWKNTIGYDPYAAENEKQEKTVDTSFEQAKGLMALAKLSNKSN-DVRGACKKCKMVGHLTFQCRNYLG 93          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9449.28250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482S6F8_9ARCH5.710e-3473.26Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2P4YHG3_9STRA5.010e-2656.12Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A3M6VM93_9STRA5.890e-2656.57CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225X0W2_9STRA1.330e-2556.57Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3SK00_9STRA8.450e-2558.62Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2D4C9D1_PYTIN8.770e-2560.47Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6YD99_9STRA9.320e-2459.52Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024G937_9STRA1.680e-2353.00CCHC-type domain-containing protein n=5 Tax=Albugo... [more]
A0A8K1FHX2_PYTOL3.470e-2360.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DTE6_BRELC6.300e-2359.09Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9449contigD-dudresnayi_contig9449:3312..3896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue5.1e-22
Seed eggNOG ortholog115417.EPrPW00000016054
Preferred nameSREK1IP1
KEGG koko:K11493
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Source PGD
EggNOG OGs1MGY4@121069,KOG2985@1,KOG2985@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.8743386-UTR-D-dudresnayi_contig9449:3311..33171622930889.8743386-UTR-D-dudresnayi_contig9449:3311..3317Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9449 3312..3317 +
1690557954.2969072-UTR-D-dudresnayi_contig9449:3311..33171690557954.2969072-UTR-D-dudresnayi_contig9449:3311..3317Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9449 3312..3317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.8971531-CDS-D-dudresnayi_contig9449:3317..38961622930889.8971531-CDS-D-dudresnayi_contig9449:3317..3896Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9449 3318..3896 +
1690557954.308756-CDS-D-dudresnayi_contig9449:3317..38961690557954.308756-CDS-D-dudresnayi_contig9449:3317..3896Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9449 3318..3896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9449.28250.1prot_D-dudresnayi_contig9449.28250.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9449 3318..3896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9449.28250.1

>prot_D-dudresnayi_contig9449.28250.1 ID=prot_D-dudresnayi_contig9449.28250.1|Name=mRNA_D-dudresnayi_contig9449.28250.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=193bp
MSRVRMPHNNRVSASAALRTNDMWSKTIGHDPYAAADEKKQSDNDPSNQT
ASLMLLAKMSNLSGVESRGGCKKCGMLGHMTFQCRNTTGPPAVANDDSSS
SSSDSDSDDDIKIQSKPAVTVPTQSIKSSEKKSESDRKRSRHDNSDESSS
DESRHKKSSKKSKRSKEDKKDKKHKHKKDKKHKHKKERKSSR*
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mRNA from alignment at D-dudresnayi_contig9449:3312..3896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9449.28250.1 ID=mRNA_D-dudresnayi_contig9449.28250.1|Name=mRNA_D-dudresnayi_contig9449.28250.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at D-dudresnayi_contig9449:3312..3896+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGTAAGATGTCTAGAGTTCGTATGCCTCATAATAACCGTGTTAGTGCCTC TGCTGCATTACGCACAAATGACATGTGGAGTAAGACAATCGGACATGATC CTTATGCTGCAGCAGATGAAAAGAAGCAATCGGACAATGATCCATCCAAC CAGACTGCAAGTCTGATGCTCTTAGCTAAGATGTCAAATCTATCTGGTGT CGAATCTAGAGGAGGATGTAAAAAGTGTGGAATGCTTGGACATATGACGT TTCAGTGCAGGAACACTACTGGACCACCTGCTGTAGCGAACGATGATTCT TCTTCGAGTAGTTCTGACAGTGATAGTGACGATGATATCAAGATACAATC GAAACCTGCTGTTACTGTTCCCACTCAATCTATAAAGAGTTCAGAGAAAA AGTCTGAGTCTGACAGGAAGCGCTCCCGTCATGACAACAGTGACGAATCT AGTAGCGATGAAAGTAGACATAAGAAATCATCCAAAAAGTCGAAAAGATC AAAGGAAGATAAAAAAGATAAGAAACATAAACATAAGAAGGATAAGAAAC ATAAACACAAGAAAGAGCGCAAGTCTTCACGTTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9449:3312..3896+

>mRNA_D-dudresnayi_contig9449.28250.1 ID=mRNA_D-dudresnayi_contig9449.28250.1|Name=mRNA_D-dudresnayi_contig9449.28250.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at D-dudresnayi_contig9449:3312..3896+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTAGAGTTCGTATGCCTCATAATAACCGTGTTAGTGCCTCTGCTGC
ATTACGCACAAATGACATGTGGAGTAAGACAATCGGACATGATCCTTATG
CTGCAGCAGATGAAAAGAAGCAATCGGACAATGATCCATCCAACCAGACT
GCAAGTCTGATGCTCTTAGCTAAGATGTCAAATCTATCTGGTGTCGAATC
TAGAGGAGGATGTAAAAAGTGTGGAATGCTTGGACATATGACGTTTCAGT
GCAGGAACACTACTGGACCACCTGCTGTAGCGAACGATGATTCTTCTTCG
AGTAGTTCTGACAGTGATAGTGACGATGATATCAAGATACAATCGAAACC
TGCTGTTACTGTTCCCACTCAATCTATAAAGAGTTCAGAGAAAAAGTCTG
AGTCTGACAGGAAGCGCTCCCGTCATGACAACAGTGACGAATCTAGTAGC
GATGAAAGTAGACATAAGAAATCATCCAAAAAGTCGAAAAGATCAAAGGA
AGATAAAAAAGATAAGAAACATAAACATAAGAAGGATAAGAAACATAAAC
ACAAGAAAGAGCGCAAGTCTTCACGTTAGATGTCTAGAGTTCGTATGCCT
CATAATAACCGTGTTAGTGCCTCTGCTGCATTACGCACAAATGACATGTG
GAGTAAGACAATCGGACATGATCCTTATGCTGCAGCAGATGAAAAGAAGC
AATCGGACAATGATCCATCCAACCAGACTGCAAGTCTGATGCTCTTAGCT
AAGATGTCAAATCTATCTGGTGTCGAATCTAGAGGAGGATGTAAAAAGTG
TGGAATGCTTGGACATATGACGTTTCAGTGCAGGAACACTACTGGACCAC
CTGCTGTAGCGAACGATGATTCTTCTTCGAGTAGTTCTGACAGTGATAGT
GACGATGATATCAAGATACAATCGAAACCTGCTGTTACTGTTCCCACTCA
ATCTATAAAGAGTTCAGAGAAAAAGTCTGAGTCTGACAGGAAGCGCTCCC
GTCATGACAACAGTGACGAATCTAGTAGCGATGAAAGTAGACATAAGAAA
TCATCCAAAAAGTCGAAAAGATCAAAGGAAGATAAAAAAGATAAGAAACA
TAAACATAAGAAGGATAAGAAACATAAACACAAGAAAGAGCGCAAGTCTT
CACGTTAG
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