mRNA_D-dudresnayi_contig9445.28247.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9445.28247.1
Unique NamemRNA_D-dudresnayi_contig9445.28247.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9445.28247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9445contigD-dudresnayi_contig9445:5832..6782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.3454733-CDS-D-dudresnayi_contig9445:5831..59931622930889.3454733-CDS-D-dudresnayi_contig9445:5831..5993Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9445 5832..5993 +
1690557954.1073413-CDS-D-dudresnayi_contig9445:5831..59931690557954.1073413-CDS-D-dudresnayi_contig9445:5831..5993Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9445 5832..5993 +
1622930889.3586998-CDS-D-dudresnayi_contig9445:6695..67821622930889.3586998-CDS-D-dudresnayi_contig9445:6695..6782Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9445 6696..6782 +
1690557954.1176677-CDS-D-dudresnayi_contig9445:6695..67821690557954.1176677-CDS-D-dudresnayi_contig9445:6695..6782Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9445 6696..6782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9445.28247.1prot_D-dudresnayi_contig9445.28247.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9445 5832..6782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9445.28247.1

>prot_D-dudresnayi_contig9445.28247.1 ID=prot_D-dudresnayi_contig9445.28247.1|Name=mRNA_D-dudresnayi_contig9445.28247.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=83bp
LFLLTISCTVRYTDCFEHWRSIQGTGVEDQSPAAKHSSIGVFVNAIIYFR
NNAERWNLFGRRTPNELRKFLTTGKLRKRHCQH
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mRNA from alignment at D-dudresnayi_contig9445:5832..6782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9445.28247.1 ID=mRNA_D-dudresnayi_contig9445.28247.1|Name=mRNA_D-dudresnayi_contig9445.28247.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=951bp|location=Sequence derived from alignment at D-dudresnayi_contig9445:5832..6782+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGTTCTTGTTGACCATCTCATGCACAGTTCGATACACCGACTGCTTTGA
GCACTGGCGATCGATACAGGGGACCGGCGTTGAGGACCAGTCACCTGCTG
CAAAACACAGCAGCATAGGCGTATTTGTCAATGCAATAATATACTTTCGG
AACAACGCAGAGGTAAGCGCAACCCGAAATGCACCTTACTACATGCTAGG
CTAAGCGGTACTGGCACAGCCCCGTGACGGTGACTGGTATGCTCGCACAG
CAATGAATGCCGATCTACAATGAACCTTCGAAGTTGGATCGTGACGTGGT
CTCCAGAACCCCGTCACACTACGAACTAGAGCTGCCGAAAAGCACAACGT
TAATGACGCCCTTAGCCCGTCTTCATTCAGGAGAGGTTATGTTGGTAAGT
AATTTTTGCGACCCAAGCGAGCAAGCAACGCGCAATGTAACTAAAGGTGT
AACTAAAGTTATCTCGTCCGAATTCGTTATTTGGCGTCGTTTCACTGTGT
GTTTTATACCTGGTATGTGATTGGGCGTGTATTTTGCTGTTAAAATGTCA
CTGGCCGAAGGTATTAATAGTGATGGGACTAATCACCGTGATAAATCCTT
ACATGACGTTGCTAACTATTTATTGTAGCCCGCTTTGAGACGACCGATAA
GGCACGCGAAATCGTGACGTATGCCAACTTAGAACTTAAAGATAAACTGA
TATCTTCTGGGGCGCTCACTACCTATCACGGATAACAAAAAAATACTTTC
CCTAAGATGCCGATCAAAGTTCTTCACACCCTCTCCAAATTGACCTCATG
CTACTTGCCACCTTCTTCGTCTTATCCCCGTCCTTCTTCGTCCTCCTTGT
CTTCATCACGCTAGCGGTGGAACTTGTTCGGCCGTCGCACTCCAAACGAG
CTGCGGAAATTTCTTACCACGGGGAAGCTTCGGAAGCGTCATTGCCAGCA
C
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9445:5832..6782+

>mRNA_D-dudresnayi_contig9445.28247.1 ID=mRNA_D-dudresnayi_contig9445.28247.1|Name=mRNA_D-dudresnayi_contig9445.28247.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at D-dudresnayi_contig9445:5832..6782+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGTTCTTGTTGACCATCTCATGCACAGTTCGATACACCGACTGCTTTGA
GCACTGGCGATCGATACAGGGGACCGGCGTTGAGGACCAGTCACCTGCTG
CAAAACACAGCAGCATAGGCGTATTTGTCAATGCAATAATATACTTTCGG
AACAACGCAGAGCTGTTCTTGTTGACCATCTCATGCACAGTTCGATACAC
CGACTGCTTTGAGCACTGGCGATCGATACAGGGGACCGGCGTTGAGGACC
AGTCACCTGCTGCAAAACACAGCAGCATAGGCGTATTTGTCAATGCAATA
ATATACTTTCGGAACAACGCAGAGCGGTGGAACTTGTTCGGCCGTCGCAC
TCCAAACGAGCTGCGGAAATTTCTTACCACGGGGAAGCTTCGGAAGCGTC
ATTGCCAGCACCGGTGGAACTTGTTCGGCCGTCGCACTCCAAACGAGCTG
CGGAAATTTCTTACCACGGGGAAGCTTCGGAAGCGTCATTGCCAGCAC
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