mRNA_D-dudresnayi_contig1058.660.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1058.660.1
Unique NamemRNA_D-dudresnayi_contig1058.660.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1058.660.1 vs. uniprot
Match: A0A7S3H4P0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4P0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.480e-8
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 GKSVAIVIQVICAALVVTMIIHLVNLYEMVYAHTTNIFGLIKLFLLKFSVGIIVLEGLICNFLINSGKTPYSSDDGDDTYDSAEK 255
            GKS  +    +  A++   +I LVN+YE V+ H  N++G++KL LLK +VG+IV++GLI + L  +G   Y SDD   TY   +K
Sbjct:  156 GKSAYVFFNALSTAVLFYGVICLVNVYEKVHEHCINLYGVLKLVLLKATVGLIVVQGLIESILYRNGSVTYESDD---TYSGEQK 237
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BLAST of mRNA_D-dudresnayi_contig1058.660.1 vs. uniprot
Match: A0A482SC88_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SC88_9ARCH)

HSP 1 Score: 48.1 bits (113), Expect = 6.030e-5
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   85 MVYAHTTNIFGLIKLFLLKFSVGIIVLEGLICNFLINSGKTPYSSD 222
            M+Y++ +N+F + K+ +LK S+ +IVLEGLI  F++  G +PY  D
Sbjct:    1 MIYSNCSNVFNVYKVMMLKLSITVIVLEGLIAEFMVRFGGSPYDDD 46
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1058.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3H4P0_9STRA4.480e-841.18Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A482SC88_9ARCH6.030e-543.48Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1058contigD-dudresnayi_contig1058:27647..27967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.5089178-CDS-D-dudresnayi_contig1058:27646..277251622927562.5089178-CDS-D-dudresnayi_contig1058:27646..27725Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 27647..27725 +
1690556808.446687-CDS-D-dudresnayi_contig1058:27646..277251690556808.446687-CDS-D-dudresnayi_contig1058:27646..27725Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 27647..27725 +
1622927562.526099-CDS-D-dudresnayi_contig1058:27787..279661622927562.526099-CDS-D-dudresnayi_contig1058:27787..27966Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 27788..27966 +
1690556808.456223-CDS-D-dudresnayi_contig1058:27787..279661690556808.456223-CDS-D-dudresnayi_contig1058:27787..27966Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 27788..27966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1058.660.1prot_D-dudresnayi_contig1058.660.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1058 27647..27966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1058.660.1

>prot_D-dudresnayi_contig1058.660.1 ID=prot_D-dudresnayi_contig1058.660.1|Name=mRNA_D-dudresnayi_contig1058.660.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=86bp
GKSVAIVIQVICAALVVTMIIHLVNLYEMVYAHTTNIFGLIKLFLLKFSV
GIIVLEGLICNFLINSGKTPYSSDDGDDTYDSAEKT
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mRNA from alignment at D-dudresnayi_contig1058:27647..27967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1058.660.1 ID=mRNA_D-dudresnayi_contig1058.660.1|Name=mRNA_D-dudresnayi_contig1058.660.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:27647..27967+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAAAATCTGTCGCCATTGTCATTCAAGTCATCTGTGCAGCACTTGTGGT
CACAATGATTATTCACTTGGTGAATTTATGTAAGTTATATGCTGAGCTTC
TAAAATAACCCCTGTTTTCGTCTCACTCCCTCCCTCTGCAGACGAGATGG
TGTACGCCCACACCACCAACATCTTCGGACTCATCAAGCTCTTCCTGCTC
AAATTCTCAGTGGGGATTATCGTACTGGAGGGGCTGATCTGCAACTTCCT
GATCAACTCGGGTAAGACCCCCTACAGCTCGGACGACGGCGACGACACCT
ACGACTCCGCAGAGAAGACCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1058:27647..27967+

>mRNA_D-dudresnayi_contig1058.660.1 ID=mRNA_D-dudresnayi_contig1058.660.1|Name=mRNA_D-dudresnayi_contig1058.660.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:27647..27967+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAAAATCTGTCGCCATTGTCATTCAAGTCATCTGTGCAGCACTTGTGGT
CACAATGATTATTCACTTGGTGAATTTATGGAAAATCTGTCGCCATTGTC
ATTCAAGTCATCTGTGCAGCACTTGTGGTCACAATGATTATTCACTTGGT
GAATTTATACGAGATGGTGTACGCCCACACCACCAACATCTTCGGACTCA
TCAAGCTCTTCCTGCTCAAATTCTCAGTGGGGATTATCGTACTGGAGGGG
CTGATCTGCAACTTCCTGATCAACTCGGGTAAGACCCCCTACAGCTCGGA
CGACGGCGACGACACCTACGACTCCGCAGAGAAGACCACGAGATGGTGTA
CGCCCACACCACCAACATCTTCGGACTCATCAAGCTCTTCCTGCTCAAAT
TCTCAGTGGGGATTATCGTACTGGAGGGGCTGATCTGCAACTTCCTGATC
AACTCGGGTAAGACCCCCTACAGCTCGGACGACGGCGACGACACCTACGA
CTCCGCAGAGAAGACC
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