mRNA_D-dudresnayi_contig1058.658.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1058.658.1
Unique NamemRNA_D-dudresnayi_contig1058.658.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1058.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1058contigD-dudresnayi_contig1058:25313..25763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.3874314-CDS-D-dudresnayi_contig1058:25312..255901622927562.3874314-CDS-D-dudresnayi_contig1058:25312..25590Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 25313..25590 -
1690556808.383084-CDS-D-dudresnayi_contig1058:25312..255901690556808.383084-CDS-D-dudresnayi_contig1058:25312..25590Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 25313..25590 -
1622927562.3992682-CDS-D-dudresnayi_contig1058:25681..257631622927562.3992682-CDS-D-dudresnayi_contig1058:25681..25763Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 25682..25763 -
1690556808.3975353-CDS-D-dudresnayi_contig1058:25681..257631690556808.3975353-CDS-D-dudresnayi_contig1058:25681..25763Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 25682..25763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1058.658.1prot_D-dudresnayi_contig1058.658.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1058 25313..25763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1058.658.1

>prot_D-dudresnayi_contig1058.658.1 ID=prot_D-dudresnayi_contig1058.658.1|Name=mRNA_D-dudresnayi_contig1058.658.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=120bp
MGGMLSKVGGYMSPGRMSQPWSSAARPGGAGGNHKGPTYSSLPTGAVDDL
DAEFSLTDESEHAGRTSGTAGGSSGSAKQEGSSRSVWGRGGPLVGMGDMY
GSPRGLSPAAGARYVDGDSL
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mRNA from alignment at D-dudresnayi_contig1058:25313..25763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1058.658.1 ID=mRNA_D-dudresnayi_contig1058.658.1|Name=mRNA_D-dudresnayi_contig1058.658.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:25313..25763- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGCGGCATGCTGAGCAAGGTGGGCGGTTACATGTCTCCCGGCCGCAT
GAGCCAGCCCTGGTCCTCCGCGGCTAGACCTGGTACGTCATTCCTTCAGT
ACTACAGCGGCTAAGTACAGTCGGCATCGTCAGTGCAGCAATCTCTCTTA
TCCTGGATTTGTGTGTTGAACAGGTGGCGCAGGCGGAAATCACAAGGGCC
CTACCTACAGCTCCCTGCCCACAGGAGCGGTGGATGACTTGGACGCCGAG
TTCTCGCTGACGGACGAGTCGGAGCATGCTGGCCGAACGAGCGGGACCGC
TGGGGGCAGCTCTGGATCTGCTAAACAAGAGGGTAGCAGCAGGAGCGTGT
GGGGACGCGGCGGCCCCTTGGTGGGCATGGGGGACATGTATGGCAGTCCC
AGGGGTCTGTCGCCGGCTGCTGGGGCGCGCTACGTGGACGGTGACAGCCT
G
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1058:25313..25763-

>mRNA_D-dudresnayi_contig1058.658.1 ID=mRNA_D-dudresnayi_contig1058.658.1|Name=mRNA_D-dudresnayi_contig1058.658.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:25313..25763- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGCGGCATGCTGAGCAAGGTGGGCGGTTACATGTCTCCCGGCCGCAT
GAGCCAGCCCTGGTCCTCCGCGGCTAGACCTGATGGGCGGCATGCTGAGC
AAGGTGGGCGGTTACATGTCTCCCGGCCGCATGAGCCAGCCCTGGTCCTC
CGCGGCTAGACCTGGTGGCGCAGGCGGAAATCACAAGGGCCCTACCTACA
GCTCCCTGCCCACAGGAGCGGTGGATGACTTGGACGCCGAGTTCTCGCTG
ACGGACGAGTCGGAGCATGCTGGCCGAACGAGCGGGACCGCTGGGGGCAG
CTCTGGATCTGCTAAACAAGAGGGTAGCAGCAGGAGCGTGTGGGGACGCG
GCGGCCCCTTGGTGGGCATGGGGGACATGTATGGCAGTCCCAGGGGTCTG
TCGCCGGCTGCTGGGGCGCGCTACGTGGACGGTGACAGCCTGGTGGCGCA
GGCGGAAATCACAAGGGCCCTACCTACAGCTCCCTGCCCACAGGAGCGGT
GGATGACTTGGACGCCGAGTTCTCGCTGACGGACGAGTCGGAGCATGCTG
GCCGAACGAGCGGGACCGCTGGGGGCAGCTCTGGATCTGCTAAACAAGAG
GGTAGCAGCAGGAGCGTGTGGGGACGCGGCGGCCCCTTGGTGGGCATGGG
GGACATGTATGGCAGTCCCAGGGGTCTGTCGCCGGCTGCTGGGGCGCGCT
ACGTGGACGGTGACAGCCTG
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