mRNA_D-dudresnayi_contig1058.657.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1058.657.1
Unique NamemRNA_D-dudresnayi_contig1058.657.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1058.657.1 vs. uniprot
Match: A0A7S3H4P0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4P0_9STRA)

HSP 1 Score: 259 bits (662), Expect = 9.150e-81
Identity = 128/239 (53.56%), Postives = 177/239 (74.06%), Query Frame = 2 
Query:   47 MFDQLDRLCLIFMLVPVLAYCALFYRQFTNLQTETYRLTVLCVRAALFLPLYAIFMYFSVVAPNSYVLMIVVITIVEGYSFYCFLALITTNLGGPTATIDFMRQSEKQLFCSCCCPSDSTIFYQKTTWAIFNLFITRSILSVLSAVCFYSHTKAGKLVYVLVNCVSAVILFYGVICLVNLYENVFEHCTNLFGVVKLVLLKVSVGAIVVQGLVENFLYSSGTSPFHDDDRYDAEDKTLR 763
            M   L  +C +F ++ V+A+ A+   QF +LQ  TYRL VL  R ALFLPL + F++ +++AP SY++MI ++TI+EGY+F  F AL T NLGGP+AT+  M+ S++QL CS C PSD  +FY++TTWA+F++F+TRS+L +L+A+CFY++T AGK  YV  N +S  +LFYGVICLVN+YE V EHC NL+GV+KLVLLK +VG IVVQGL+E+ LY +G+  +  DD Y  E K LR
Sbjct:    2 MAVTLTLICSLFFVMAVVAFMAVVVCQFRHLQPATYRLIVLSARTALFLPLCSFFIFIALIAPGSYLMMIFLVTIIEGYAFNSFFALTTENLGGPSATVQLMKSSDRQLLCSFCLPSDVVVFYRRTTWAMFHVFVTRSVLGLLAAICFYANTDAGKSAYVFFNALSTAVLFYGVICLVNVYEKVHEHCINLYGVLKLVLLKATVGLIVVQGLIESILYRNGSVTYESDDTYSGEQKALR 240
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1058.657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3H4P0_9STRA9.150e-8153.56Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1058contigD-dudresnayi_contig1058:23520..24387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size763
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1058.657.1prot_D-dudresnayi_contig1058.657.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1058 23566..24387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.3203506-UTR-D-dudresnayi_contig1058:23519..235651622927562.3203506-UTR-D-dudresnayi_contig1058:23519..23565Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1058 23520..23565 +
1690556808.3562117-UTR-D-dudresnayi_contig1058:23519..235651690556808.3562117-UTR-D-dudresnayi_contig1058:23519..23565Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1058 23520..23565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.3338463-CDS-D-dudresnayi_contig1058:23565..241061622927562.3338463-CDS-D-dudresnayi_contig1058:23565..24106Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 23566..24106 +
1690556808.3653016-CDS-D-dudresnayi_contig1058:23565..241061690556808.3653016-CDS-D-dudresnayi_contig1058:23565..24106Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 23566..24106 +
1622927562.3478734-CDS-D-dudresnayi_contig1058:24211..243871622927562.3478734-CDS-D-dudresnayi_contig1058:24211..24387Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 24212..24387 +
1690556808.374006-CDS-D-dudresnayi_contig1058:24211..243871690556808.374006-CDS-D-dudresnayi_contig1058:24211..24387Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 24212..24387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1058.657.1

>prot_D-dudresnayi_contig1058.657.1 ID=prot_D-dudresnayi_contig1058.657.1|Name=mRNA_D-dudresnayi_contig1058.657.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=239bp
MFDQLDRLCLIFMLVPVLAYCALFYRQFTNLQTETYRLTVLCVRAALFLP
LYAIFMYFSVVAPNSYVLMIVVITIVEGYSFYCFLALITTNLGGPTATID
FMRQSEKQLFCSCCCPSDSTIFYQKTTWAIFNLFITRSILSVLSAVCFYS
HTKAGKLVYVLVNCVSAVILFYGVICLVNLYENVFEHCTNLFGVVKLVLL
KVSVGAIVVQGLVENFLYSSGTSPFHDDDRYDAEDKTLR
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mRNA from alignment at D-dudresnayi_contig1058:23520..24387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1058.657.1 ID=mRNA_D-dudresnayi_contig1058.657.1|Name=mRNA_D-dudresnayi_contig1058.657.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=868bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:23520..24387+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGAAATACAACATCCTGGTATATACGTAATAAGTGGCGATCAAGTATGT
TTGACCAACTGGATAGATTATGTTTGATATTTATGCTGGTTCCAGTCCTG
GCCTACTGCGCTCTCTTTTATCGACAGTTCACGAACTTGCAAACAGAAAC
CTACAGGCTCACAGTTCTTTGTGTCCGTGCAGCCCTTTTCTTGCCATTGT
ACGCCATATTTATGTATTTCTCTGTCGTTGCTCCAAATTCTTACGTGTTA
ATGATTGTGGTGATCACGATAGTGGAGGGATACTCTTTCTACTGTTTCTT
AGCATTAATTACAACAAATCTTGGTGGTCCCACAGCAACGATTGATTTTA
TGCGTCAATCAGAAAAACAATTGTTTTGCAGTTGCTGCTGTCCGTCTGAT
AGTACGATTTTTTATCAGAAGACCACATGGGCTATTTTTAATCTATTTAT
TACGCGTTCAATTTTAAGCGTCCTCTCGGCAGTGTGCTTCTACTCTCACA
CTAAAGCAGGGAAACTCGTATATGTACTGGTGAATTGTGTCTCAGCGGTT
ATTTTATTCTATGGGGTAATCTGCTTAGTCAACCTATGTAAGTGTCCTGT
CGCTGCTGTGGTGGTGTGCATCGTCCTGCTGTACTGTATGTAGCTGACTG
ACTGCTGTGCCCTGGTGCCTACTGTATGTGTCTGTGCTTCAGATGAGAAC
GTGTTCGAGCACTGCACCAACCTGTTCGGCGTGGTGAAGCTGGTCCTGCT
GAAGGTGAGCGTGGGCGCCATCGTGGTGCAGGGCCTGGTGGAGAACTTCC
TGTACAGCAGCGGCACATCGCCCTTCCACGACGACGACCGGTACGACGCT
GAGGACAAAACCCTGCGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1058:23520..24387+

>mRNA_D-dudresnayi_contig1058.657.1 ID=mRNA_D-dudresnayi_contig1058.657.1|Name=mRNA_D-dudresnayi_contig1058.657.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:23520..24387+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTTGACCAACTGGATAGATTATGTTTGATATTTATGCTGGTTCCAGT
CCTGGCCTACTGCGCTCTCTTTTATCGACAGTTCACGAACTTGCAAACAG
AAACCTACAGGCTCACAGTTCTTTGTGTCCGTGCAGCCCTTTTCTTGCCA
TTGTACGCCATATTTATGTATTTCTCTGTCGTTGCTCCAAATTCTTACGT
GTTAATGATTGTGGTGATCACGATAGTGGAGGGATACTCTTTCTACTGTT
TCTTAGCATTAATTACAACAAATCTTGGTGGTCCCACAGCAACGATTGAT
TTTATGCGTCAATCAGAAAAACAATTGTTTTGCAGTTGCTGCTGTCCGTC
TGATAGTACGATTTTTTATCAGAAGACCACATGGGCTATTTTTAATCTAT
TTATTACGCGTTCAATTTTAAGCGTCCTCTCGGCAGTGTGCTTCTACTCT
CACACTAAAGCAGGGAAACTCGTATATGTACTGGTGAATTGTGTCTCAGC
GGTTATTTTATTCTATGGGGTAATCTGCTTAGTCAACCTATATGTTTGAC
CAACTGGATAGATTATGTTTGATATTTATGCTGGTTCCAGTCCTGGCCTA
CTGCGCTCTCTTTTATCGACAGTTCACGAACTTGCAAACAGAAACCTACA
GGCTCACAGTTCTTTGTGTCCGTGCAGCCCTTTTCTTGCCATTGTACGCC
ATATTTATGTATTTCTCTGTCGTTGCTCCAAATTCTTACGTGTTAATGAT
TGTGGTGATCACGATAGTGGAGGGATACTCTTTCTACTGTTTCTTAGCAT
TAATTACAACAAATCTTGGTGGTCCCACAGCAACGATTGATTTTATGCGT
CAATCAGAAAAACAATTGTTTTGCAGTTGCTGCTGTCCGTCTGATAGTAC
GATTTTTTATCAGAAGACCACATGGGCTATTTTTAATCTATTTATTACGC
GTTCAATTTTAAGCGTCCTCTCGGCAGTGTGCTTCTACTCTCACACTAAA
GCAGGGAAACTCGTATATGTACTGGTGAATTGTGTCTCAGCGGTTATTTT
ATTCTATGGGGTAATCTGCTTAGTCAACCTATATGAGAACGTGTTCGAGC
ACTGCACCAACCTGTTCGGCGTGGTGAAGCTGGTCCTGCTGAAGGTGAGC
GTGGGCGCCATCGTGGTGCAGGGCCTGGTGGAGAACTTCCTGTACAGCAG
CGGCACATCGCCCTTCCACGACGACGACCGGTACGACGCTGAGGACAAAA
CCCTGCGCATGAGAACGTGTTCGAGCACTGCACCAACCTGTTCGGCGTGG
TGAAGCTGGTCCTGCTGAAGGTGAGCGTGGGCGCCATCGTGGTGCAGGGC
CTGGTGGAGAACTTCCTGTACAGCAGCGGCACATCGCCCTTCCACGACGA
CGACCGGTACGACGCTGAGGACAAAACCCTGCGC
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