mRNA_D-dudresnayi_contig10579.655.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10579.655.1
Unique NamemRNA_D-dudresnayi_contig10579.655.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10579.655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10579contigD-dudresnayi_contig10579:8840..10573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.2589688-CDS-D-dudresnayi_contig10579:8840..89941622927562.2589688-CDS-D-dudresnayi_contig10579:8840..8994Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10579 8841..8994 -
1690556808.3405483-CDS-D-dudresnayi_contig10579:8840..89941690556808.3405483-CDS-D-dudresnayi_contig10579:8840..8994Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10579 8841..8994 -
1622927562.2752454-CDS-D-dudresnayi_contig10579:10484..105731622927562.2752454-CDS-D-dudresnayi_contig10579:10484..10573Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10579 10485..10573 -
1690556808.3478155-CDS-D-dudresnayi_contig10579:10484..105731690556808.3478155-CDS-D-dudresnayi_contig10579:10484..10573Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10579 10485..10573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10579.655.1prot_D-dudresnayi_contig10579.655.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10579 8841..10573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10579.655.1

>prot_D-dudresnayi_contig10579.655.1 ID=prot_D-dudresnayi_contig10579.655.1|Name=mRNA_D-dudresnayi_contig10579.655.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=81bp
LKSCTRDDVTGTAPIGPTPAPTVAPPTSTSDDEEPSSAPVDYRGDGDDED
LLEYSDDDGPLSDDDHHHKPDDDDRGGVGES
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mRNA from alignment at D-dudresnayi_contig10579:8840..10573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10579.655.1 ID=mRNA_D-dudresnayi_contig10579.655.1|Name=mRNA_D-dudresnayi_contig10579.655.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1734bp|location=Sequence derived from alignment at D-dudresnayi_contig10579:8840..10573- (Desmarestia dudresnayi DdudBR16 monoicous)
CTTAAGTCTTGCACCCGCGATGACGTCACCGGGACAGCACCCATCGGGCC
TACCCCTGCCCCGACGGTGGCACCACCAACCTCAACTTCGTAAGTGGAAC
CGGGAAAACTACCAATAGGATTTACCGCACGGTCTTACAGGCAGGATATT
TGGGGTGGTATTTTTTGCTTATTATTGTATTGTTACGGTGTGGTCGTTAA
GGGTGCACTCCCGATTTTGTTTTTTTGTCTTGGCCTAGAAAATAACACCT
GTGACCTTCAAAAATCAGTCTATATCGAAGATAATAACAGTCTACAGTAA
CATTGGGACCCACGGGAAGAGTATATCTCTCGAACTAGGTATTAATAGGC
CCACCTTGGTTTGCTGGTATTGAGGAGAATCGTTTTGCCTCGAAGGTGCA
AGCTCTACGGTACCTTCTTCAGAAAGAAAAACGCGTACAGGACGAACACT
CTTAAAAACACAAGTGACGATTTGCAAATACAGCGTTTTCTCGTGCTGGG
CGGCAAGAGATCTCGCTAGAGCTTTCGATAGATATATCTACTAGTGTTCT
GTGTTGTCCCCGACCTTCGAGACCAAAGAGATAGCGCAGCATAAGAAACG
GTGTATTTGGTATCTGTCCCTTGATTTTTGAAGTATACTGTGCTTGTCGG
TGTGTTTCGTGCCAAATGTTGCAACGTAGAGCTCAGGCGCGTGAGACAAA
AGGTCGTCCTCAACGAAGGCTTTCTGTAGCAAAACGAAGATGGGCCCTTA
GGAAATATCTCGAGAGATGTACTCTTTCCCGTGGCGTCCAATGTTGGATT
TGTTGTTATCTTGGGTATAGACTGATTCAACTGCTCTTTTTTTGGCCGAG
ACGGAAAAAAACAATGTGAAAATGGTTGAAAGCGCACCCTTAAGGTTAAG
GGTAGGTTACTAGAAAATTTTACCGAAATCCTGTTAATGTTATTTTACCA
TCATAATTGTGAGAGCTTCGAAACAAAGTGCTCATTCGAAGCTGTCGTCC
ATATGCCAGAAAGTAGGCACCACAGGGTGCCGAAGTCCGCCTCACAAGTG
GTTCTTAGTAGGATGCAGCTCACCCTTGGTGCGAATCACCGAACACCTCA
CGGCGTTTCGCGATTTGGTACACGCGCGCATGGTCGGTGAACACCCGACG
TGCTTCGTCCCGGCATTGTAGATATGCGAGGGTCTATGGTCGTACGACTA
CGGCCATGCATGAAATGAGCACACCCCCCTCGCGGCACTCTGTCGATTAT
TCGTCTCCCTTTCACGAAAGATTCCCACTCCATGAACGAGGTACGACCAG
GCAGGATTTTTTTTGCGGTGGAGGCGTTTCGAGCGCGCCAAAAAAATATG
GCTTGGACGGGGATTCTTGACCCTTTTTTTCCCGCCAAAATTTATAGTCC
TGAGGGTTGAGGTGTTTGTTGTTGTTGTAATTTCAGTACTTGTGTTGGTT
ATGCTTGCTGCTCAGATAATTGTCTCCGACAGCCAAGTGGTCAAGTCGCG
AGTTTTTTTTTTTGACACGCACGTCTTTTTTTTTCTTCTTGCTCTCATTT
ATCCTCCCCTGACCTACCCTGGTCCCCAGTGATGATGAAGAGCCTTCGTC
AGCCCCTGTTGACTACCGGGGCGATGGTGATGATGAAGACCTGTTGGAGT
ACTCCGATGATGACGGGCCGTTGAGTGACGACGATCATCACCACAAGCCT
GATGATGATGACCGCGGAGGGGTAGGCGAAAGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10579:8840..10573-

>mRNA_D-dudresnayi_contig10579.655.1 ID=mRNA_D-dudresnayi_contig10579.655.1|Name=mRNA_D-dudresnayi_contig10579.655.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at D-dudresnayi_contig10579:8840..10573- (Desmarestia dudresnayi DdudBR16 monoicous)
CTTAAGTCTTGCACCCGCGATGACGTCACCGGGACAGCACCCATCGGGCC
TACCCCTGCCCCGACGGTGGCACCACCAACCTCAACTTCCTTAAGTCTTG
CACCCGCGATGACGTCACCGGGACAGCACCCATCGGGCCTACCCCTGCCC
CGACGGTGGCACCACCAACCTCAACTTCTGATGATGAAGAGCCTTCGTCA
GCCCCTGTTGACTACCGGGGCGATGGTGATGATGAAGACCTGTTGGAGTA
CTCCGATGATGACGGGCCGTTGAGTGACGACGATCATCACCACAAGCCTG
ATGATGATGACCGCGGAGGGGTAGGCGAAAGTTGATGATGAAGAGCCTTC
GTCAGCCCCTGTTGACTACCGGGGCGATGGTGATGATGAAGACCTGTTGG
AGTACTCCGATGATGACGGGCCGTTGAGTGACGACGATCATCACCACAAG
CCTGATGATGATGACCGCGGAGGGGTAGGCGAAAGT
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