mRNA_D-dudresnayi_contig10575.653.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10575.653.1
Unique NamemRNA_D-dudresnayi_contig10575.653.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Match: A0A519SWK9_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SWK9_FLASP)

HSP 1 Score: 140 bits (353), Expect = 4.690e-39
Identity = 65/93 (69.89%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    4 MQNQSQPILKSTNGYQLSIIRFSLNTETLPVFIPVMQST--NTTIYSVTMEINGKQYQQFMQFEPQNLNPADPDEYYYVYNYQFVIYLINKCL 276
            MQ QSQPILK+TNG+++SIIRF+LNTETLPVFIP M+ST  +TTIYS TM+ NG  YQQ+M ++PQNLN  DPDEYYY+Y+YQF+IYL+N C+
Sbjct:    1 MQTQSQPILKNTNGFKMSIIRFTLNTETLPVFIPTMKSTADSTTIYSFTMDYNGISYQQYMVYQPQNLNSVDPDEYYYIYSYQFLIYLVNNCI 93
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BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Match: A0A520CLJ5_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A520CLJ5_9SPHI)

HSP 1 Score: 72.0 bits (175), Expect = 9.090e-15
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  151 INGKQYQQFMQFEPQNLNPADPDEYYYVYNYQFVIYLINKCL 276
            +NG  YQQFMQF PQN+NP D DEY+YVYNYQ++IYL+N CL
Sbjct:    1 MNGVSYQQFMQFAPQNVNPIDADEYFYVYNYQYLIYLVNPCL 42
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BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Match: V6BPN3_9VIRU (Minor virion protein n=2 Tax=Zamilon virus TaxID=1411887 RepID=V6BPN3_9VIRU)

HSP 1 Score: 55.8 bits (133), Expect = 4.810e-7
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 FMQNQSQPILKSTNGYQLSIIRFSLNTETLPVFIPVMQ-----STNTTIYSVTMEINGK-QYQQFMQFEPQNLNPAD 213
            F    +QP+L + + Y LS++RFS+ T+ +P+ IP +Q     + N TIYSVT+E NG    Q F+Q++    NP D
Sbjct:   34 FQAQLTQPLLYNPDKYYLSVVRFSIPTQYVPLMIPEIQPFPNTNVNNTIYSVTLEYNGVFSSQTFVQYDVSLTNPND 110
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BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Match: V18_SPTNK (Uncharacterized protein V18 n=1 Tax=Sputnik virophage TaxID=543939 RepID=V18_SPTNK)

HSP 1 Score: 53.5 bits (127), Expect = 1.080e-6
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    1 FMQNQSQPILKSTNGYQLSIIRFSLNTETLPVFIPVMQ-----STNTTIYSVTMEINGK-QYQQFMQFEPQNLNPADP 216
            F    +QPI+ + + Y LS++RFS+ T+ +P+ IP +Q     + N TIYSV++  NG    Q F+QF+P   +P  P
Sbjct:   36 FQAQLTQPIVHNPSEYFLSVVRFSIPTQNIPLTIPQIQPYPNTNVNNTIYSVSIGYNGTYSSQNFVQFDPSLTSPNIP 113
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BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Match: A0A0A0RJU7_9VIRU (Putative minor capsid protein n=1 Tax=Yellowstone Lake virophage 6 TaxID=1557034 RepID=A0A0A0RJU7_9VIRU)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-6
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 FMQNQSQPILKSTNGYQLSIIRFSLNTETLPVFIPVMQST----NTTIYSVTMEINGK-QYQQFMQFEPQNLNPADPDEYYYVYN 240
            + +N+S PI+     Y L I R+ L+T  LP+FIP++QS+    N TIYS+T+E +G      ++ F PQNL  + P   +Y  N
Sbjct:   34 YNENRSSPIVYDPYKYDLIIARWQLDTNYLPIFIPLIQSSSIDPNLTIYSITLEYSGTIGNPAYVSFAPQNLVASVPLAPFYTTN 118
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BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Match: I0CEQ9_9VIRU (Minor virion protein n=3 Tax=Lavidaviridae TaxID=1914302 RepID=I0CEQ9_9VIRU)

HSP 1 Score: 53.5 bits (127), Expect = 3.140e-6
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    1 FMQNQSQPILKSTNGYQLSIIRFSLNTETLPVFIPVMQ-----STNTTIYSVTMEINGK-QYQQFMQFEPQNLNPADP 216
            F    +QPI+ + + Y LS++RFS+ T+ +P+ IP +Q     + N TIYSV++  NG    Q F+QF+P   +P  P
Sbjct:   36 FQAQLTQPIVHNPSEYFLSVVRFSIPTQNIPLTIPQIQPYPNTNVNNTIYSVSIGYNGTYSSQNFVQFDPSLTSPNIP 113
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10575.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A519SWK9_FLASP4.690e-3969.89Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
A0A520CLJ5_9SPHI9.090e-1571.43Uncharacterized protein n=1 Tax=Pedobacter sp. Tax... [more]
V6BPN3_9VIRU4.810e-740.26Minor virion protein n=2 Tax=Zamilon virus TaxID=1... [more]
V18_SPTNK1.080e-638.46Uncharacterized protein V18 n=1 Tax=Sputnik viroph... [more]
A0A0A0RJU7_9VIRU1.230e-638.82Putative minor capsid protein n=1 Tax=Yellowstone ... [more]
I0CEQ9_9VIRU3.140e-638.46Minor virion protein n=3 Tax=Lavidaviridae TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10575contigD-dudresnayi_contig10575:10558..10833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog1411887.V6BPN3_9VIRU
GOsGO:0005575,GO:0019012
EggNOG OGs4QBPV@10239
Best tax levelViruses
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size273
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.050551-UTR-D-dudresnayi_contig10575:10557..105601622927562.050551-UTR-D-dudresnayi_contig10575:10557..10560Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10575 10558..10560 +
1690556808.2209053-UTR-D-dudresnayi_contig10575:10557..105601690556808.2209053-UTR-D-dudresnayi_contig10575:10557..10560Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10575 10558..10560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.0635803-CDS-D-dudresnayi_contig10575:10560..108331622927562.0635803-CDS-D-dudresnayi_contig10575:10560..10833Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10575 10561..10833 +
1690556808.2411819-CDS-D-dudresnayi_contig10575:10560..108331690556808.2411819-CDS-D-dudresnayi_contig10575:10560..10833Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10575 10561..10833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10575.653.1prot_D-dudresnayi_contig10575.653.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10575 10561..10833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10575.653.1

>prot_D-dudresnayi_contig10575.653.1 ID=prot_D-dudresnayi_contig10575.653.1|Name=mRNA_D-dudresnayi_contig10575.653.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
MQNQSQPILKSTNGYQLSIIRFSLNTETLPVFIPVMQSTNTTIYSVTMEI
NGKQYQQFMQFEPQNLNPADPDEYYYVYNYQFVIYLINKCL
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mRNA from alignment at D-dudresnayi_contig10575:10558..10833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10575.653.1 ID=mRNA_D-dudresnayi_contig10575.653.1|Name=mRNA_D-dudresnayi_contig10575.653.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at D-dudresnayi_contig10575:10558..10833+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTTATGCAGAATCAGTCTCAGCCTATTCTGAAATCAACCAATGGTTATCA
ACTGAGTATCATTCGATTCTCACTCAATACTGAGACACTTCCTGTTTTCA
TTCCCGTCATGCAATCCACAAACACGACCATTTACTCAGTTACCATGGAG
ATCAACGGCAAGCAGTATCAGCAGTTTATGCAGTTTGAACCACAGAACCT
GAATCCCGCAGATCCCGATGAGTACTATTACGTTTACAACTATCAATTTG
TAATTTACCTCATCAACAAGTGCCTT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10575:10558..10833+

>mRNA_D-dudresnayi_contig10575.653.1 ID=mRNA_D-dudresnayi_contig10575.653.1|Name=mRNA_D-dudresnayi_contig10575.653.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig10575:10558..10833+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAGAATCAGTCTCAGCCTATTCTGAAATCAACCAATGGTTATCAACT
GAGTATCATTCGATTCTCACTCAATACTGAGACACTTCCTGTTTTCATTC
CCGTCATGCAATCCACAAACACGACCATTTACTCAGTTACCATGGAGATC
AACGGCAAGCAGTATCAGCAGTTTATGCAGTTTGAACCACAGAACCTGAA
TCCCGCAGATCCCGATGAGTACTATTACGTTTACAACTATCAATTTGTAA
TTTACCTCATCAACAAGTGCCTTATGCAGAATCAGTCTCAGCCTATTCTG
AAATCAACCAATGGTTATCAACTGAGTATCATTCGATTCTCACTCAATAC
TGAGACACTTCCTGTTTTCATTCCCGTCATGCAATCCACAAACACGACCA
TTTACTCAGTTACCATGGAGATCAACGGCAAGCAGTATCAGCAGTTTATG
CAGTTTGAACCACAGAACCTGAATCCCGCAGATCCCGATGAGTACTATTA
CGTTTACAACTATCAATTTGTAATTTACCTCATCAACAAGTGCCTT
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