mRNA_D-dudresnayi_contig10575.652.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10575.652.1
Unique NamemRNA_D-dudresnayi_contig10575.652.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: A0A519SHY6_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SHY6_FLASP)

HSP 1 Score: 293 bits (750), Expect = 6.630e-98
Identity = 139/227 (61.23%), Postives = 178/227 (78.41%), Query Frame = 1
Query:    1 MSFVLKQLKNNRLKVEKSVPE-VEC--SFVGGKINNKTLHKMIKNGYADDPRETENVDGYILDKSLSGTRAQVYYNPETKHLVINHRGTKGAHDVMTDIGIMFGHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIARQASKSDKHDIVVVNPAVAPLDMFNKQKDNETIIRSTLDPISALHTLNPYANESRTIDIPFETYNPIEEHHAKILDRLGDTDVGV 672
            MSF +KQLKNNR++V+   PE VEC  ++ GGKIN KTL  MI NGY+  P++ + +DGY+LDK LSG RAQVY+NPET HLV+NHRGT+G HDV+TDI +MFG KS KRF+HGK ITD ALKKY+TD VT++GHSLGA +A++A+K    + +VVNPAV P D+  KQ+ N+TIIRSTLDPIS L  LNP+ ++  TIDI  ++ NP+ EH +K+LDRLGD DVG+
Sbjct:    1 MSFEVKQLKNNRIRVQLCRPEHVECHYAYTGGKINVKTLKSMISNGYSRKPKDKDTIDGYVLDKELSGERAQVYHNPETNHLVVNHRGTQGLHDVITDIRLMFGDKSNKRFQHGKTITDKALKKYDTDYVTMTGHSLGASVAKEANKEHGKETIVVNPAVVPTDLTTKQRKNDTIIRSTLDPISMLRNLNPWRSKKNTIDIKAKSINPLTEHSSKVLDRLGDRDVGI 227          
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: A0A4Q5T6N4_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q5T6N4_9BACT)

HSP 1 Score: 251 bits (640), Expect = 1.780e-81
Identity = 117/201 (58.21%), Postives = 154/201 (76.62%), Query Frame = 1
Query:   64 VECSFVGGKINNKTLHKMIKNGYADDPRETENVDGYILDKSLSGTRAQVYYNPETKHLVINHRGTKGAHDVMTDIGIMFGHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIARQASKSDKHDIVVVNPAVAPLDMFNKQKDNETIIRSTLDPISALHTLNPYANESRTIDIPFETYNPIEEHHAKILDRL-GDTD 663
            V    +GGKIN +TLH MIKNGYAD+P++T N+DGY++DK LSG RAQVYY+P+TKHLVINHRGTKG  DVMTDI +M G+K+ KRF HGK+ITD A+KKY+TDN+TLS HSLG++IA+ A++  K   V +NPA+ P D+  KQ+ NE I+RS LDPISALHT  P+ ++  T+DI     + + EH + IL R+ G+T+
Sbjct:    6 VNFGLIGGKINAQTLHHMIKNGYADNPQDTHNIDGYVIDKQLSGQRAQVYYHPDTKHLVINHRGTKGNQDVMTDIKMMLGYKNNKRFAHGKEITDKAIKKYDTDNITLSAHSLGSQIAQYANEKHKVHQVSLNPAILPSDLLRKQRSNEVIVRSELDPISALHTSRPFKSKKNTVDIKPAGLDLLNEHSSDILKRIDGETE 206          
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: A0A519Z4D3_9SPHI (Lipase_3 domain-containing protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519Z4D3_9SPHI)

HSP 1 Score: 184 bits (468), Expect = 2.980e-56
Identity = 83/145 (57.24%), Postives = 113/145 (77.93%), Query Frame = 1
Query:  238 VINHRGTKGAHDVMTDIGIMFGHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIARQASKSDKHDIVVVNPAVAPLDMFNKQKDNETIIRSTLDPISALHTLNPYANESRTIDIPFETYNPIEEHHAKILDRLGDTDVGV 672
            ++NHRGT+G  D++TDI +MFG KS +RF+HGK ITD ALKKY+TDNVT++GHSLGA +A++A+K    + +VVNPAV  +D+  KQ+ N+T+IRSTLDPIS LH LNP+ ++  TIDI  +  N + EH + +LDRLGD DVG+
Sbjct:    1 MVNHRGTQGLKDIITDIRLMFGDKSNERFQHGKMITDKALKKYDTDNVTVTGHSLGAAVAKEANKEHGKETIVVNPAVVQIDLITKQRKNDTVIRSTLDPISMLHNLNPWKSKKSTIDIRAKLINLLTEHSSAVLDRLGDRDVGI 145          
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: A0A0R5K6B7_9VIRU (Uncharacterized protein n=1 Tax=Qinghai Lake virophage TaxID=1516115 RepID=A0A0R5K6B7_9VIRU)

HSP 1 Score: 71.6 bits (174), Expect = 7.950e-11
Identity = 60/229 (26.20%), Postives = 98/229 (42.79%), Query Frame = 1
Query:    4 SFVLKQLKNNRLKVEKSVPEVECSFVGGKINNKTLHKMIKNGYADDPRETENVD--GYILDKSLSGTRAQVYYNPETKHLVINHRGTKGAHDVMTDIGIMFGH--KSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIARQASKSDKH---DIVVVNPAVAPLDMFNKQKDNETIIRSTLDPISALHTLNPYANESRTIDIPFETYNPIEEHHAKILDRLGDTDVG 669
            S +  ++ N R +   + PE E    G  +    L+        D   +  N D   Y +D  LS  R +VY N +T  ++  HRG+    D + +  ++     KS   ++  KK  D   KKY  +N  L GHS   +   + +K   +   + +  N A    D+     +N+T IR + DP+SAL  L    N+   + I  + +NP + H    L  LG   +G
Sbjct:  121 SNLFNRMLNTRPETPDTEPESEDEQEGAGMMGAGLYADDMKDLLDASYDKRNYDVGDYKIDHDLSDPRVKVYTNEKTGKVLSVHRGSADWRDWLDNYKLVTRGEMKSSNTYKEHKKKQDAINKKYGIENQILLGHSRAGKYVEELNKEKGNKYGETLTYNKATNWTDIGRNNPNNQTDIRVSNDPVSALRFLQKGKNK---VTIKNKGFNPFKAHGTGKLSFLGKKLIG 346          
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: G5JMT8_STRCG (Uncharacterized protein n=1 Tax=Streptococcus criceti HS-6 TaxID=873449 RepID=G5JMT8_STRCG)

HSP 1 Score: 61.2 bits (147), Expect = 9.480e-8
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  142 PRETENVDGYILDKSLSGTRAQVYYNPETKHLVINHRGT--KG--AHDVMTDIG-IMFGHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIA-RQASKSDKHDIVVVNPAVAPLDMFNKQ-KDNETIIRSTLDPISALHTLNPYANESRT 585
            P   E VD +  DKS +GT    + +  T  +++ + GT  KG  A DV TD+  I+ G  +G  +E   +  D   KKY +DN+TL+GHSLG  +A R A K +    VV N A   + +  +  K N  +  + L  +S    +N   ++ +T
Sbjct:   55 PSNLEYVDSFY-DKS-TGTSGTAFKDTNTGEIIVAYTGTNLKGDMAFDVKTDVADILVG--TGGHYEAAYQFYDKMAKKYGSDNITLTGHSLGGNVAQRVALKKNAQSTVVYNAAPLYIPLVTQALKSNPAL--TLLVTLSTTDNINDIKHDQKT 203          
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: G5JMT6_STRCG (Uncharacterized protein n=1 Tax=Streptococcus criceti HS-6 TaxID=873449 RepID=G5JMT6_STRCG)

HSP 1 Score: 57.0 bits (136), Expect = 5.900e-6
Identity = 56/186 (30.11%), Postives = 83/186 (44.62%), Query Frame = 1
Query:   61 EVECSFVGGKIN---NKTLHKMIKNGYADDPRETENVDGYILDKSLSGTRAQVYYNPETKHLVINHRGTK----GAHDVMTD-IGIMFGHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIA-RQASKSDKHDIVVVN--PAVAPLDMFNKQKDNETIIRSTLDPISALHTLNPYANESRT 585
            EVE   V   ++   NKT    I +     P   E VD +  D S +GT    + +  T  ++I + GT        DV TD + I+ G  +G  +E   +  D   KKY +D +TL+GHSLG  +A R A K +    VV N  P   PL +    K N  +  + L  +S    +N    + +T
Sbjct:   22 EVENMRVNDDVDPNKNKTSTNNILHDKQSLPSNLEYVDSF-RDAS-TGTSGTAFKDKNTDEIIIAYTGTNLNADPVQDVKTDAVDILVG--TGSHYEAAYQFYDKMAKKYGSDTITLTGHSLGGNVAQRVALKKNAQSTVVYNAAPLYVPL-VTQAMKANPAL--TLLVTLSTTDNINDIKQDRKT 200          
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Match: UPI00036FB681 (DUF2974 domain-containing protein n=1 Tax=Streptococcus orisratti TaxID=114652 RepID=UPI00036FB681)

HSP 1 Score: 55.1 bits (131), Expect = 1.510e-5
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 1
Query:   61 EVECSFVGGKINNKTL--HKMIKNGYA---DDPRETENVDGYILDKSLSGTRAQVYYNPETKHLVINHRGTKGA---HDVMTDIGIMFGHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIA-RQASKSDKHDIVVVNPA 468
            + E   V   IN +T    K I+  Y+   D P     +D +    S +GT    + + ET  ++I + GT       D++TDI +  G  SG  ++   +  D   +KY + N+TL+GHSLG  +A R A + +  + +V N A
Sbjct:   19 DTETYAVKNNINLETESGQKQIRKYYSHIEDFPSNLNYLDSFY--DSSTGTSRTAFKDTETGEVIIAYTGTNAKVNKQDIVTDI-VSIGLGSGYHYDSAYQFYDKIAEKYGSANLTLTGHSLGGNVAQRVALEKNAKNTIVYNAA 160          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10575.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A519SHY6_FLASP6.630e-9861.23Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
A0A4Q5T6N4_9BACT1.780e-8158.21Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A519Z4D3_9SPHI2.980e-5657.24Lipase_3 domain-containing protein n=1 Tax=Pedobac... [more]
A0A0R5K6B7_9VIRU7.950e-1126.20Uncharacterized protein n=1 Tax=Qinghai Lake virop... [more]
G5JMT8_STRCG9.480e-832.26Uncharacterized protein n=1 Tax=Streptococcus cric... [more]
G5JMT6_STRCG5.900e-630.11Uncharacterized protein n=1 Tax=Streptococcus cric... [more]
UPI00036FB6811.510e-529.66DUF2974 domain-containing protein n=1 Tax=Streptoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10575contigD-dudresnayi_contig10575:8785..9459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog873449.STRCR_0053
EggNOG free text desc.multivesicular body membrane disassembly
EggNOG OGs1VI5A@1239,4HPEX@91061,COG5153@1,COG5153@2
COG Functional cat.IU
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size675
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.0082774-CDS-D-dudresnayi_contig10575:8784..94591622927562.0082774-CDS-D-dudresnayi_contig10575:8784..9459Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10575 8785..9459 +
1690556808.209058-CDS-D-dudresnayi_contig10575:8784..94591690556808.209058-CDS-D-dudresnayi_contig10575:8784..9459Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10575 8785..9459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10575.652.1prot_D-dudresnayi_contig10575.652.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10575 8785..9459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10575.652.1

>prot_D-dudresnayi_contig10575.652.1 ID=prot_D-dudresnayi_contig10575.652.1|Name=mRNA_D-dudresnayi_contig10575.652.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=225bp
MSFVLKQLKNNRLKVEKSVPEVECSFVGGKINNKTLHKMIKNGYADDPRE
TENVDGYILDKSLSGTRAQVYYNPETKHLVINHRGTKGAHDVMTDIGIMF
GHKSGKRFEHGKKITDDALKKYNTDNVTLSGHSLGAEIARQASKSDKHDI
VVVNPAVAPLDMFNKQKDNETIIRSTLDPISALHTLNPYANESRTIDIPF
ETYNPIEEHHAKILDRLGDTDVGV*
back to top

mRNA from alignment at D-dudresnayi_contig10575:8785..9459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10575.652.1 ID=mRNA_D-dudresnayi_contig10575.652.1|Name=mRNA_D-dudresnayi_contig10575.652.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=675bp|location=Sequence derived from alignment at D-dudresnayi_contig10575:8785..9459+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGTTTTGTATTGAAACAATTGAAGAACAATCGTTTGAAAGTGGAGAA GAGTGTTCCTGAAGTGGAGTGTAGTTTTGTAGGAGGTAAAATCAACAACA AAACATTACATAAAATGATCAAGAACGGGTACGCTGATGACCCTAGAGAG ACCGAGAACGTAGATGGCTACATACTGGATAAATCGTTGAGTGGCACTCG TGCGCAAGTGTATTACAATCCTGAAACGAAGCATCTCGTAATCAACCATC GAGGGACTAAGGGAGCACATGATGTAATGACAGATATCGGAATAATGTTT GGACACAAAAGTGGGAAACGATTCGAGCACGGTAAAAAGATCACCGATGA CGCTCTAAAGAAATACAACACTGATAATGTGACACTGAGTGGACACTCAT TAGGTGCAGAAATTGCAAGGCAAGCTAGTAAGAGTGACAAACACGATATA GTAGTAGTAAACCCAGCTGTCGCCCCTTTGGATATGTTCAACAAACAAAA AGACAACGAGACAATCATACGAAGCACCCTTGATCCGATTAGTGCTTTAC ACACGCTTAATCCGTATGCCAATGAATCTAGGACGATTGATATTCCATTT GAAACATACAATCCCATCGAAGAGCACCATGCGAAAATATTGGATCGTCT CGGAGATACAGACGTTGGCGTTTAA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10575:8785..9459+

>mRNA_D-dudresnayi_contig10575.652.1 ID=mRNA_D-dudresnayi_contig10575.652.1|Name=mRNA_D-dudresnayi_contig10575.652.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at D-dudresnayi_contig10575:8785..9459+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGTTTTGTATTGAAACAATTGAAGAACAATCGTTTGAAAGTGGAGAA
GAGTGTTCCTGAAGTGGAGTGTAGTTTTGTAGGAGGTAAAATCAACAACA
AAACATTACATAAAATGATCAAGAACGGGTACGCTGATGACCCTAGAGAG
ACCGAGAACGTAGATGGCTACATACTGGATAAATCGTTGAGTGGCACTCG
TGCGCAAGTGTATTACAATCCTGAAACGAAGCATCTCGTAATCAACCATC
GAGGGACTAAGGGAGCACATGATGTAATGACAGATATCGGAATAATGTTT
GGACACAAAAGTGGGAAACGATTCGAGCACGGTAAAAAGATCACCGATGA
CGCTCTAAAGAAATACAACACTGATAATGTGACACTGAGTGGACACTCAT
TAGGTGCAGAAATTGCAAGGCAAGCTAGTAAGAGTGACAAACACGATATA
GTAGTAGTAAACCCAGCTGTCGCCCCTTTGGATATGTTCAACAAACAAAA
AGACAACGAGACAATCATACGAAGCACCCTTGATCCGATTAGTGCTTTAC
ACACGCTTAATCCGTATGCCAATGAATCTAGGACGATTGATATTCCATTT
GAAACATACAATCCCATCGAAGAGCACCATGCGAAAATATTGGATCGTCT
CGGAGATACAGACGTTGGCGTTTAAATGAGTTTTGTATTGAAACAATTGA
AGAACAATCGTTTGAAAGTGGAGAAGAGTGTTCCTGAAGTGGAGTGTAGT
TTTGTAGGAGGTAAAATCAACAACAAAACATTACATAAAATGATCAAGAA
CGGGTACGCTGATGACCCTAGAGAGACCGAGAACGTAGATGGCTACATAC
TGGATAAATCGTTGAGTGGCACTCGTGCGCAAGTGTATTACAATCCTGAA
ACGAAGCATCTCGTAATCAACCATCGAGGGACTAAGGGAGCACATGATGT
AATGACAGATATCGGAATAATGTTTGGACACAAAAGTGGGAAACGATTCG
AGCACGGTAAAAAGATCACCGATGACGCTCTAAAGAAATACAACACTGAT
AATGTGACACTGAGTGGACACTCATTAGGTGCAGAAATTGCAAGGCAAGC
TAGTAAGAGTGACAAACACGATATAGTAGTAGTAAACCCAGCTGTCGCCC
CTTTGGATATGTTCAACAAACAAAAAGACAACGAGACAATCATACGAAGC
ACCCTTGATCCGATTAGTGCTTTACACACGCTTAATCCGTATGCCAATGA
ATCTAGGACGATTGATATTCCATTTGAAACATACAATCCCATCGAAGAGC
ACCATGCGAAAATATTGGATCGTCTCGGAGATACAGACGTTGGCGTTTAA
back to top