mRNA_D-dudresnayi_contig10574.650.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10574.650.1
Unique NamemRNA_D-dudresnayi_contig10574.650.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.730e-28
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP+SY+ AR S YS +   A+S E  GL+ AGTF    ++P GCN ++A+W+YKWK +  GK+ + KA  VA G+ Q  GVDYFETF+PTA A S RL+ ALAC+
Sbjct:   14 EPSSYNEARQSKYSSIWDKAISAEFGGLLRAGTFALAVKIPIGCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHAASIRLLVALACK 118          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.340e-27
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  A  S ++ +   AMS E++GL+ AGTFT  +++PEGCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RLV ALAC+
Sbjct:  212 EPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACK 316          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.430e-27
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  A  S ++ +   AMS E++GL+ AGTFT  +++PEGCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RLV ALAC+
Sbjct:  417 EPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACK 521          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.440e-27
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  A  S ++ +   AMS E++GL+ AGTFT  +++PEGCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RLV ALAC+
Sbjct:  481 EPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACK 585          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.440e-27
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  A  S ++ +   AMS E++GL+ AGTFT  +++PEGCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RLV ALAC+
Sbjct:  625 EPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACK 729          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.460e-27
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  A  S ++ +   AMS E++GL+ AGTFT  +++PEGCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RLV ALAC+
Sbjct:  831 EPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACK 935          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.590e-26
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    4 PASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            P SY  A+ S Y+ +   AMS E++GL+ AGTFT  +++P GCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S+RLV ALAC+
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACK 818          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.910e-26
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  A  + ++ +   AM  E++GL+ AGTFT  +++PEGCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RLV ALAC+
Sbjct:  145 EPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACK 249          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 7.580e-26
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            EP SY  AR S ++ +   AMS E++GL+ AGTFT   ++P GCN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S RL+ ALAC+
Sbjct:  779 EPGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACK 883          
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.010e-25
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    4 PASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAKWLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVAALACQ 315
            P SY  A+ S Y+ +   AMS E++GL+ AGTFT  +++P  CN ++A+W++KWK D  GK+ + KA  VA G+ Q  GVDY ETF+PTA+A S+RLV ALAC+
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACK 551          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10574.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLE6_9PHAE5.730e-2852.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE2.340e-2752.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE2.430e-2752.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE2.440e-2752.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.440e-2752.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE2.460e-2752.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE1.590e-2651.92Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JP36_9PHAE2.910e-2650.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE7.580e-2651.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.010e-2550.96Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10574contigD-dudresnayi_contig10574:318..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score79.7
Seed ortholog evalue8.9e-13
Seed eggNOG ortholog7029.ACYPI24114-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927561.9018724-CDS-D-dudresnayi_contig10574:317..6321622927561.9018724-CDS-D-dudresnayi_contig10574:317..632Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10574 318..632 -
1690556808.191199-CDS-D-dudresnayi_contig10574:317..6321690556808.191199-CDS-D-dudresnayi_contig10574:317..632Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10574 318..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10574.650.1prot_D-dudresnayi_contig10574.650.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10574 318..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10574.650.1

>prot_D-dudresnayi_contig10574.650.1 ID=prot_D-dudresnayi_contig10574.650.1|Name=mRNA_D-dudresnayi_contig10574.650.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=105bp
EPASYSAARSSAYSDVRLTAMSMELDGLVAAGTFTEVSELPEGCNAVNAK
WLYKWKGDSNGKVKRVKAPTVAMGYSQVEGVDYFETFAPTASATSNRLVA
ALACQ
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mRNA from alignment at D-dudresnayi_contig10574:318..632-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10574.650.1 ID=mRNA_D-dudresnayi_contig10574.650.1|Name=mRNA_D-dudresnayi_contig10574.650.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at D-dudresnayi_contig10574:318..632- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGCCTGCCTCGTATTCCGCGGCACGTTCATCGGCGTATTCGGATGTGCG GTTGACGGCAATGAGTATGGAGCTAGATGGACTCGTAGCGGCCGGGACGT TTACAGAAGTGTCTGAATTGCCTGAGGGATGCAACGCTGTGAACGCAAAG TGGCTGTATAAATGGAAGGGCGACTCGAATGGTAAGGTGAAAAGAGTAAA GGCGCCTACGGTAGCTATGGGGTACAGTCAGGTAGAGGGAGTAGACTACT TCGAGACTTTCGCTCCCACTGCTTCCGCGACGTCTAACAGGTTGGTAGCT GCCCTGGCGTGCCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10574:318..632-

>mRNA_D-dudresnayi_contig10574.650.1 ID=mRNA_D-dudresnayi_contig10574.650.1|Name=mRNA_D-dudresnayi_contig10574.650.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at D-dudresnayi_contig10574:318..632- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGCCTGCCTCGTATTCCGCGGCACGTTCATCGGCGTATTCGGATGTGCG
GTTGACGGCAATGAGTATGGAGCTAGATGGACTCGTAGCGGCCGGGACGT
TTACAGAAGTGTCTGAATTGCCTGAGGGATGCAACGCTGTGAACGCAAAG
TGGCTGTATAAATGGAAGGGCGACTCGAATGGTAAGGTGAAAAGAGTAAA
GGCGCCTACGGTAGCTATGGGGTACAGTCAGGTAGAGGGAGTAGACTACT
TCGAGACTTTCGCTCCCACTGCTTCCGCGACGTCTAACAGGTTGGTAGCT
GCCCTGGCGTGCCAGGAGCCTGCCTCGTATTCCGCGGCACGTTCATCGGC
GTATTCGGATGTGCGGTTGACGGCAATGAGTATGGAGCTAGATGGACTCG
TAGCGGCCGGGACGTTTACAGAAGTGTCTGAATTGCCTGAGGGATGCAAC
GCTGTGAACGCAAAGTGGCTGTATAAATGGAAGGGCGACTCGAATGGTAA
GGTGAAAAGAGTAAAGGCGCCTACGGTAGCTATGGGGTACAGTCAGGTAG
AGGGAGTAGACTACTTCGAGACTTTCGCTCCCACTGCTTCCGCGACGTCT
AACAGGTTGGTAGCTGCCCTGGCGTGCCAG
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