mRNA_D-dudresnayi_contig10546.601.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10546.601.1
Unique NamemRNA_D-dudresnayi_contig10546.601.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10546.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10546contigD-dudresnayi_contig10546:8969..9956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size989
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.8993204-UTR-D-dudresnayi_contig10546:8968..93981622927557.8993204-UTR-D-dudresnayi_contig10546:8968..9398Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10546 8969..9398 +
1690556806.4834473-UTR-D-dudresnayi_contig10546:8968..93981690556806.4834473-UTR-D-dudresnayi_contig10546:8968..9398Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10546 8969..9398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.9174857-CDS-D-dudresnayi_contig10546:9398..99561622927557.9174857-CDS-D-dudresnayi_contig10546:9398..9956Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 9399..9956 +
1690556806.4953666-CDS-D-dudresnayi_contig10546:9398..99561690556806.4953666-CDS-D-dudresnayi_contig10546:9398..9956Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 9399..9956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10546.601.1prot_D-dudresnayi_contig10546.601.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10546 9399..9956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10546.601.1

>prot_D-dudresnayi_contig10546.601.1 ID=prot_D-dudresnayi_contig10546.601.1|Name=mRNA_D-dudresnayi_contig10546.601.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=186bp
MYCISTVFTCCSCASQNQSLPTYNNLDLLSFRDRIELTRPKSRDRSSLFT
RPKSLHTRMKTILLCTQRGSKRPCRDRVPPQRSSRRNHCMHTCMRACNNQ
QWLAHPVARLCNPRTTTRICYACNAITILATSILKIWYSSNSSSSGAGTN
IIWCLKYPLVTTTAQTDPLLRKVLQKKSIASLSIFR
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mRNA from alignment at D-dudresnayi_contig10546:8969..9956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10546.601.1 ID=mRNA_D-dudresnayi_contig10546.601.1|Name=mRNA_D-dudresnayi_contig10546.601.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=988bp|location=Sequence derived from alignment at D-dudresnayi_contig10546:8969..9956+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGCGTGTTTGCTCTCCGAAGTTTGTGCTCTACCACAGCAGGTACATATAA
ACAAACATCCCAGTGTTGTAAGATGGGTCACAGCTCACCACCACCCTGCT
GACACGTATAAAATGCATGTATCATGGAATGTAGTACGCGGACGTTTCAT
TAACGAGCTGAGCAGAAAAGATGCTATCACGCCACTTCGGAACACAACAA
ATAAATACCCGCATACTGCTACACCTGAGCAATAATGCTTCCTTAAAAAC
GACACCCCACACCAACAACACACCTACTATCTACCGGACTGAGCAAAATG
CCTTCTTCAAAAACAACACCCTACACCAACAACAGAACACACATCTGAGT
TTTTCCTTGCTACCATCCATACTGTACCACAGAGTATCAATACTACAGTA
CTTCGAAATATACCATAATATCACACTGCAATGTATTGTATTTCTACGGT
ATTTACTTGTTGCTCGTGCGCAAGTCAAAATCAATCTCTACCGACCTATA
ATAACCTCGACCTACTATCGTTCCGTGATCGAATTGAACTCACCAGGCCA
AAAAGTCGCGATCGCTCTTCGCTCTTCACACGACCAAAAAGCCTCCATAC
ACGAATGAAAACCATACTGTTGTGCACTCAGCGGGGGTCTAAGCGTCCAT
GCAGGGACCGCGTGCCGCCTCAACGCTCATCACGTCGCAACCACTGCATG
CACACATGCATGCGTGCATGTAATAACCAACAATGGTTAGCCCATCCAGT
AGCCAGGCTCTGTAACCCGAGAACAACAACTCGTATATGTTACGCCTGTA
ACGCTATTACCATACTTGCTACAAGTATTCTTAAAATATGGTACAGCAGC
AACAGTAGTAGTAGTGGAGCTGGTACCAACATTATTTGGTGTTTGAAGTA
CCCGCTCGTGACTACGACTGCACAGACAGACCCATTATTACGAAAAGTCC
TACAAAAAAAAAGTATTGCTTCGCTCAGTATTTTTCGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10546:8969..9956+

>mRNA_D-dudresnayi_contig10546.601.1 ID=mRNA_D-dudresnayi_contig10546.601.1|Name=mRNA_D-dudresnayi_contig10546.601.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at D-dudresnayi_contig10546:8969..9956+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTATTGTATTTCTACGGTATTTACTTGTTGCTCGTGCGCAAGTCAAAA
TCAATCTCTACCGACCTATAATAACCTCGACCTACTATCGTTCCGTGATC
GAATTGAACTCACCAGGCCAAAAAGTCGCGATCGCTCTTCGCTCTTCACA
CGACCAAAAAGCCTCCATACACGAATGAAAACCATACTGTTGTGCACTCA
GCGGGGGTCTAAGCGTCCATGCAGGGACCGCGTGCCGCCTCAACGCTCAT
CACGTCGCAACCACTGCATGCACACATGCATGCGTGCATGTAATAACCAA
CAATGGTTAGCCCATCCAGTAGCCAGGCTCTGTAACCCGAGAACAACAAC
TCGTATATGTTACGCCTGTAACGCTATTACCATACTTGCTACAAGTATTC
TTAAAATATGGTACAGCAGCAACAGTAGTAGTAGTGGAGCTGGTACCAAC
ATTATTTGGTGTTTGAAGTACCCGCTCGTGACTACGACTGCACAGACAGA
CCCATTATTACGAAAAGTCCTACAAAAAAAAAGTATTGCTTCGCTCAGTA
TTTTTCGCATGTATTGTATTTCTACGGTATTTACTTGTTGCTCGTGCGCA
AGTCAAAATCAATCTCTACCGACCTATAATAACCTCGACCTACTATCGTT
CCGTGATCGAATTGAACTCACCAGGCCAAAAAGTCGCGATCGCTCTTCGC
TCTTCACACGACCAAAAAGCCTCCATACACGAATGAAAACCATACTGTTG
TGCACTCAGCGGGGGTCTAAGCGTCCATGCAGGGACCGCGTGCCGCCTCA
ACGCTCATCACGTCGCAACCACTGCATGCACACATGCATGCGTGCATGTA
ATAACCAACAATGGTTAGCCCATCCAGTAGCCAGGCTCTGTAACCCGAGA
ACAACAACTCGTATATGTTACGCCTGTAACGCTATTACCATACTTGCTAC
AAGTATTCTTAAAATATGGTACAGCAGCAACAGTAGTAGTAGTGGAGCTG
GTACCAACATTATTTGGTGTTTGAAGTACCCGCTCGTGACTACGACTGCA
CAGACAGACCCATTATTACGAAAAGTCCTACAAAAAAAAAGTATTGCTTC
GCTCAGTATTTTTCGC
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