mRNA_D-dudresnayi_contig10546.597.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10546.597.1
Unique NamemRNA_D-dudresnayi_contig10546.597.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10546.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10546contigD-dudresnayi_contig10546:335..3363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10546.597.1prot_D-dudresnayi_contig10546.597.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10546 413..3363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.7652974-UTR-D-dudresnayi_contig10546:334..4121622927557.7652974-UTR-D-dudresnayi_contig10546:334..412Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10546 335..412 +
1690556806.43669-UTR-D-dudresnayi_contig10546:334..4121690556806.43669-UTR-D-dudresnayi_contig10546:334..412Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10546 335..412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.7800124-CDS-D-dudresnayi_contig10546:412..5291622927557.7800124-CDS-D-dudresnayi_contig10546:412..529Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 413..529 +
1690556806.4467716-CDS-D-dudresnayi_contig10546:412..5291690556806.4467716-CDS-D-dudresnayi_contig10546:412..529Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 413..529 +
1622927557.801022-CDS-D-dudresnayi_contig10546:3123..33631622927557.801022-CDS-D-dudresnayi_contig10546:3123..3363Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 3124..3363 +
1690556806.456225-CDS-D-dudresnayi_contig10546:3123..33631690556806.456225-CDS-D-dudresnayi_contig10546:3123..3363Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 3124..3363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10546.597.1

>prot_D-dudresnayi_contig10546.597.1 ID=prot_D-dudresnayi_contig10546.597.1|Name=mRNA_D-dudresnayi_contig10546.597.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=119bp
MEQEDIPFWKHSIVGDDGFVVVSEENANEGEVLEVHRVPLLGTVDDNEGI
TIHATSPDFTFAPPPKPKDWSVSESDQSTPTSDQQNPPWLILPPYVGAAL
ITAVAVPAVFWLTRRARRH
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mRNA from alignment at D-dudresnayi_contig10546:335..3363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10546.597.1 ID=mRNA_D-dudresnayi_contig10546.597.1|Name=mRNA_D-dudresnayi_contig10546.597.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3029bp|location=Sequence derived from alignment at D-dudresnayi_contig10546:335..3363+ (Desmarestia dudresnayi DdudBR16 monoicous)
TAGGTCACGCGACAGTTTTCCCACGATCGACTCTCCTTGACCACTTGGAG
ATGCACGGCTTTCGGTTTGTTCTCAAGCATGGAGCAAGAAGACATTCCAT
TTTGGAAACATTCTATCGTGGGTGATGATGGCTTTGTTGTTGTATCTGAG
GAAAATGCTAATGAGGGCGAGGTGCTCGAGGTGCATCGAGTGCCGGTGAG
ACGTATTTTGTTGTGTTATAGCATAACGGCACTTACCTTGTTCCTGTGCT
GTACACCGAGACGCCGCTATTCGACCCTGAGTTGGCCGTGGTTCACGAGG
CCATCGGCCGAGTTTGCGACAAAAGCATCCATTGTGATTTGCTACTTTTC
TTACTCTCTTCTGCGTTAATGCAAGTAGTTGGTTGCTTCGCCGTTGCAGT
CGATGCGCTTGTTTGTTCATCCTGCCGATATCTGCCAAAACAAAAAAAAT
GCGGGACGTCTGCAGCACATATCGAACATCGAGGGCAAACGGGGAATTGC
CTCGTTTGACGTCGTGTTTGCAGCCAATGTTACAGAGGCCGTGTCTCTTG
CATTACTTCACCAATGGCTGCTGTTGATTGTGTATTGGACTGCTATTGTG
ATATCGTTGTTGTAGCCGGCGACGCTATCTGTTCGCTAGAGCATGCCTGG
TACTCGCCTCGGTTCAACTGGGCGGAGACATGGTGCTTCTATGGACTTGC
ACTGACTACAGGCACTCGTTTTTTTGTTTTTTTTTTCTGTCCCATTTATT
ATCTTCGCTCTAATCCTTTCTCTAGCTCCATCTCTCTTCGTAATTCAGAT
CCGGGGTCACATTGTAGGCGCTCCTCCCTCCTTCCCACTACGCTACGTGC
CTACACTTTTATCGCGAGAAGAATTTAACACTTTCTTCCCTCGTCGACTT
TCATTGAATTGTGCTTACTCACGCTCTCGCATTTTTCCGCGACGAAAGAT
GGCACAGAAAAGTGCCACCCGGAATCGAACCCCCAACTTCCGCCAACAGA
GGCAACACCCTAACCATTAGACAACTGCGCAACCCCTGTCGTATGGTTCT
GTTATTGTTGTATTACTGCTGTTTGTGATACAGAAGTATCACATCCTATC
ATACGAGTATTGAAAACATATTTCTGTACCGGGATAGTTTGTTGGCCGTC
ACTTTGCAGGAGCTCGTTGTGTGAGTGTTTCTGAGTACGCTGCGGTTTAC
GGGTGTGCGCCTTTCTCGCACACGCTGGCACTTCCCTTTGAAGCTGAAGC
TTATCACTCACAGGGCTCGGCAATCCCACAGCTCGTCAACTTCAATCGAA
TTTTGATGACAGGTACTATTAGTATAATATAATACTACTGTACCGTATTC
TTGTTGTAAAAAAGTCGCATGTACCGAGATTCGAACCCACGAATTTCTCC
ACGGTAATTATTGTTTTTCTTACAAAGACATCAGCCGTGACGTTCCAAAC
TGGTTCGGGGGCCAGGGGATAATCGTCAACCTCACTGTGTGATACATCGG
TCGCGCGGATTCTATCGGTCCTCAGATAAGTTATAACGCAGTGGCTCCCC
TGGGGTGTCCCAGGCTCTACTTATAAGGAATGCGGTGAGGTCATCTACAC
TCCAGGTTTCGGCCGATTTACGCCGTCCCCGGTTCTGCCCTCCAGACAGT
GTCTCGAACATCACCTGTTTGGGTAGCCGCCTGCTGTGCTTCCTAGCGTC
GCCCCCCGCAAATAGAAGTCGCCGTTTTAGGGACGGTCGTTTCCACATTC
TCGTATGGGATCTTCTTGGGGGCCTTTGCGTACGACATCAGATGGTCGGT
GAGGTGTCGACGTCGGAAACCAATGACGCGCAGGAGGAGGTGGTGATGCG
CCGTTCGGAGCTTGGCGAAGTGTTTGTTGGCCGAGTATTACACGCCACGC
ATCTACGTACGACATGATTTCCCGTCGCTTCGGTCTTTGTATTCTACAGC
GTAGTTACATCGTGCCATGGTAACGAATGCATGCGCGGCCTCAAGAGCTC
TACAGGTCTATGGTAGCGCCAGCCATCTACTGTATACTAGTACTGCCGAC
ACCGAGTTAGGCTTTGGGGAGCCATTTGACTACAACCGTACATATATGTA
TGCACAGTAGTAATGTACCGCTAGAAGTAGCGCTACGCAATACAGTACGT
TTTTTTTTGGGCGGGCGTATATTTTCCCACAGCTTACATGTACAGTAGCT
GTATCCATCGGGGTGACATGTAGGCTAAAGGTCCGTGAACCGACGCTGTT
GGCAGAAGCTCGGCGGTTCGAAAATCGTTGAAAACACAACGGCACTTTTC
ACTTTTTCTGTGTCGTCTTCTGTTGAGGAAAGCGCGAGAGCGCGAGTAAG
CACAATTCGATGAAAGCCGATGAGCTAAGGGAGTGCCAAACCCTGTGCGC
GATAAAAACCAAGACATGCACCGGCGAGGGAGAACGGAAGGCGCCTGTGA
CAATGGCTTTGCTCAAAAAGGGGCGCTGAGCGATGAGTAGAAGATTTCCT
TTGAGCTGGACTGGCAGTGAAAGTGGTGGATGTAAAAAACAAAATTGAAC
AACAACTTCGATATCCCAGTCCAGCTTGCAGGAGCTCATCGGCCAGCACT
CCTGTCTGAACCAGCCGTGCCTGGCATGTGTGTGTAAGTATGTGTGTGTG
CATGCAGCCCGCGTCGAAAACAAAAGAACGAAACATGAATGATAACATGA
CACAAGTTGTGCTAATTCCGACCGTTACCTCTCCCTTGCCCCCCGGCTCC
CGTGTCAAAAAACGCCCTCGAAACAAAATGTAAAAACAGTTATTGGGAAC
CGTCGACGACAACGAAGGCATAACCATCCACGCTACATCGCCGGACTTCA
CATTCGCACCGCCGCCGAAACCTAAGGACTGGTCGGTATCGGAAAGCGAC
CAATCCACTCCTACATCCGACCAGCAGAACCCACCCTGGCTGATCCTACC
CCCCTACGTGGGCGCCGCCCTAATAACGGCGGTGGCTGTACCCGCCGTGT
TCTGGCTCACCCGTCGCGCGCGCCGTCAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10546:335..3363+

>mRNA_D-dudresnayi_contig10546.597.1 ID=mRNA_D-dudresnayi_contig10546.597.1|Name=mRNA_D-dudresnayi_contig10546.597.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at D-dudresnayi_contig10546:335..3363+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGCAAGAAGACATTCCATTTTGGAAACATTCTATCGTGGGTGATGA
TGGCTTTGTTGTTGTATCTGAGGAAAATGCTAATGAGGGCGAGGTGCTCG
AGGTGCATCGAGTGCCGATGGAGCAAGAAGACATTCCATTTTGGAAACAT
TCTATCGTGGGTGATGATGGCTTTGTTGTTGTATCTGAGGAAAATGCTAA
TGAGGGCGAGGTGCTCGAGGTGCATCGAGTGCCGTTATTGGGAACCGTCG
ACGACAACGAAGGCATAACCATCCACGCTACATCGCCGGACTTCACATTC
GCACCGCCGCCGAAACCTAAGGACTGGTCGGTATCGGAAAGCGACCAATC
CACTCCTACATCCGACCAGCAGAACCCACCCTGGCTGATCCTACCCCCCT
ACGTGGGCGCCGCCCTAATAACGGCGGTGGCTGTACCCGCCGTGTTCTGG
CTCACCCGTCGCGCGCGCCGTCACTTATTGGGAACCGTCGACGACAACGA
AGGCATAACCATCCACGCTACATCGCCGGACTTCACATTCGCACCGCCGC
CGAAACCTAAGGACTGGTCGGTATCGGAAAGCGACCAATCCACTCCTACA
TCCGACCAGCAGAACCCACCCTGGCTGATCCTACCCCCCTACGTGGGCGC
CGCCCTAATAACGGCGGTGGCTGTACCCGCCGTGTTCTGGCTCACCCGTC
GCGCGCGCCGTCAC
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