mRNA_D-dudresnayi_contig10540.591.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10540.591.1
Unique NamemRNA_D-dudresnayi_contig10540.591.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Match: A0A7S3H5D8_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5D8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.840e-33
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:   10 SLGGNLVTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDRLLREIGILNVGTRLQFLNEIVKVQ 222
            +L GNLVTKWD +EVS WLV+IGYNDLVPLF QSNING AL+RLDDRLL+EIG+LNVGTRLQFLNE++++Q
Sbjct:   27 ALNGNLVTKWDASEVSKWLVTIGYNDLVPLFHQSNINGAALTRLDDRLLKEIGVLNVGTRLQFLNEVIRIQ 97
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BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Match: A0A7S3GTM8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTM8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.760e-28
Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 QSLSLGGNLVTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDRLLREIGILNVGTRLQFLNEIVKVQ 222
            +S  L G L+T W  +EV+NWLVSIGYNDLVP+F ++NING+ALSRL+D LLREIG+ NVGTRLQF+NE++K+Q
Sbjct:   39 ESYVLNGTLITTWQVDEVANWLVSIGYNDLVPVFHRANINGLALSRLNDNLLREIGVANVGTRLQFMNEVLKIQ 112
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BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Match: F2Z643_YARLI (YALI0F13629p n=5 Tax=Yarrowia TaxID=4951 RepID=F2Z643_YARLI)

HSP 1 Score: 53.9 bits (128), Expect = 1.240e-6
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   25 LVTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDRLLREIGILNVGTRLQ 195
            LVT WD  +V+ WL S+   + +P+F+Q+ I G  L  +D +LL+++G++ VG R++
Sbjct:  188 LVTSWDKTKVAEWLRSLKCAEYIPMFEQNEICGEVLLEIDQKLLKDMGVVKVGDRVR 244
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BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Match: A0A1E4TBL8_9ASCO (Uncharacterized protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TBL8_9ASCO)

HSP 1 Score: 51.2 bits (121), Expect = 1.060e-5
Identity = 24/58 (41.38%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   28 VTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDRLLREIGILNVGTRLQFL 201
            +++W  ++VS +L S+G +  +PLF++ ++ G  L RL+  LLREIG++ VG RL  L
Sbjct:    9 LSQWSLDDVSVYLSSLGLDQYLPLFKEHDVTGDVLIRLNHSLLREIGVVVVGDRLDIL 66
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BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Match: A0A0L0SEV6_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SEV6_ALLM3)

HSP 1 Score: 50.8 bits (120), Expect = 1.510e-5
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:   28 VTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDRLLREIGILNVGTRLQFLNEI 210
            V  WD   V+ WLV+ GY      F ++ I+G  L RLDD LLR++G+  VG R+  L  I
Sbjct:   65 VLMWDVPAVTTWLVNAGYAAYEMAFLENGISGDVLVRLDDALLRDLGVDKVGPRIALLKAI 125
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BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Match: A0A1V0SL83_9VIRU (SAM domain protein n=1 Tax=Klosneuvirus KNV1 TaxID=1977640 RepID=A0A1V0SL83_9VIRU)

HSP 1 Score: 49.3 bits (116), Expect = 1.520e-5
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   28 VTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDRLLREIGILNVGTR---LQFLNEIVK 216
            +  W T++V  WL++ G +D+V    ++ ING+ L  L D+ L EIGI  +G R   L  L EIV+
Sbjct:   21 INDWTTDDVCEWLIANGLDDIVEYISKNAINGMVLKNLTDKELIEIGITKIGHRKKILATLKEIVE 86
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10540.591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3H5D8_9STRA8.840e-3378.87Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3GTM8_9STRA3.760e-2867.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F2Z643_YARLI1.240e-638.60YALI0F13629p n=5 Tax=Yarrowia TaxID=4951 RepID=F2Z... [more]
A0A1E4TBL8_9ASCO1.060e-541.38Uncharacterized protein n=1 Tax=Tortispora caseino... [more]
A0A0L0SEV6_ALLM31.510e-542.62Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A1V0SL83_9VIRU1.520e-539.39SAM domain protein n=1 Tax=Klosneuvirus KNV1 TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10540contigD-dudresnayi_contig10540:8960..9181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.3769128-CDS-D-dudresnayi_contig10540:8959..91811622927557.3769128-CDS-D-dudresnayi_contig10540:8959..9181Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10540 8960..9181 -
1690556806.2940457-CDS-D-dudresnayi_contig10540:8959..91811690556806.2940457-CDS-D-dudresnayi_contig10540:8959..9181Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10540 8960..9181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10540.591.1prot_D-dudresnayi_contig10540.591.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10540 8960..9181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10540.591.1

>prot_D-dudresnayi_contig10540.591.1 ID=prot_D-dudresnayi_contig10540.591.1|Name=mRNA_D-dudresnayi_contig10540.591.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=74bp
QSLSLGGNLVTKWDTNEVSNWLVSIGYNDLVPLFQQSNINGVALSRLDDR
LLREIGILNVGTRLQFLNEIVKVQ
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mRNA from alignment at D-dudresnayi_contig10540:8960..9181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10540.591.1 ID=mRNA_D-dudresnayi_contig10540.591.1|Name=mRNA_D-dudresnayi_contig10540.591.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at D-dudresnayi_contig10540:8960..9181- (Desmarestia dudresnayi DdudBR16 monoicous)
CAATCCTTGTCTCTGGGAGGAAATTTAGTTACGAAATGGGATACTAATGA
AGTTTCGAACTGGTTGGTATCAATTGGTTATAATGACCTTGTCCCACTTT
TCCAACAATCAAATATAAACGGTGTAGCTTTATCTCGTCTGGATGATCGA
CTTCTTCGGGAGATTGGAATTTTAAATGTGGGAACCCGTCTACAATTTCT
CAATGAAATTGTTAAGGTACAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10540:8960..9181-

>mRNA_D-dudresnayi_contig10540.591.1 ID=mRNA_D-dudresnayi_contig10540.591.1|Name=mRNA_D-dudresnayi_contig10540.591.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at D-dudresnayi_contig10540:8960..9181- (Desmarestia dudresnayi DdudBR16 monoicous)
CAATCCTTGTCTCTGGGAGGAAATTTAGTTACGAAATGGGATACTAATGA
AGTTTCGAACTGGTTGGTATCAATTGGTTATAATGACCTTGTCCCACTTT
TCCAACAATCAAATATAAACGGTGTAGCTTTATCTCGTCTGGATGATCGA
CTTCTTCGGGAGATTGGAATTTTAAATGTGGGAACCCGTCTACAATTTCT
CAATGAAATTGTTAAGGTACAACAATCCTTGTCTCTGGGAGGAAATTTAG
TTACGAAATGGGATACTAATGAAGTTTCGAACTGGTTGGTATCAATTGGT
TATAATGACCTTGTCCCACTTTTCCAACAATCAAATATAAACGGTGTAGC
TTTATCTCGTCTGGATGATCGACTTCTTCGGGAGATTGGAATTTTAAATG
TGGGAACCCGTCTACAATTTCTCAATGAAATTGTTAAGGTACAA
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